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PMC:7253482 / 5806-6161 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
275 41-56 Chemical denotes N-linked glycan
276 173-185 Chemical denotes carbohydrate MESH:D002241
277 231-247 Chemical denotes N-linked glycans
293 1-5 Disease denotes SARS MESH:D045169
294 7-11 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T38 173-185 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T39 216-229 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 1-5 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T37 23-28 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T38 291-299 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T50 173-185 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T51 216-229 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T52 240-247 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T874 1-5 NNS denotes SARS
T875 5-6 -COMMA- denotes ,
T876 7-11 NNS denotes MERS
T877 12-15 CC denotes and
T878 16-20 NN denotes HKU1
T879 21-22 NN denotes S
T880 23-28 NNS denotes genes
T881 29-35 VBP denotes encode
T882 36-40 JJ denotes many
T883 41-49 JJ denotes N-linked
T884 50-56 NN denotes glycan
T885 57-64 NNS denotes sequons
T886 64-65 -SEMICOLON- denotes ;
T887 66-68 CD denotes 23
T888 68-69 -COMMA- denotes ,
T889 70-72 CD denotes 23
T890 73-76 CC denotes and
T891 77-79 CD denotes 29
T892 79-80 -COMMA- denotes ,
T893 81-93 RB denotes respectively
T894 94-95 -LRB- denotes (
T895 95-102 NN denotes Fig. 1a
T896 102-103 -RRB- denotes )
T897 105-107 PRP denotes We
T898 108-117 RB denotes initially
T899 118-124 VBD denotes sought
T900 125-127 TO denotes to
T901 128-142 RB denotes quantitatively
T902 143-149 VB denotes assess
T903 150-153 DT denotes the
T904 154-165 NN denotes composition
T905 166-168 IN denotes of
T906 169-172 DT denotes the
T907 173-185 NN denotes carbohydrate
T908 186-196 NNS denotes structures
T909 197-206 VBD denotes displayed
T910 207-209 IN denotes on
T911 210-213 DT denotes the
T912 214-215 NN denotes S
T913 216-229 NNS denotes glycoproteins
T914 231-239 VBN denotes N-linked
T915 240-247 NNS denotes glycans
T916 248-252 VBD denotes were
T917 253-266 RB denotes enzymatically
T918 267-275 VBN denotes released
T919 275-276 -COMMA- denotes ,
T920 277-290 RB denotes fluorescently
T921 291-299 VBN denotes labelled
T922 299-300 -COMMA- denotes ,
T923 301-304 CC denotes and
T924 305-314 VBN denotes subjected
T925 315-317 TO denotes to
T926 318-329 JJ denotes hydrophilic
T927 330-341 NN denotes interaction
R877 T874 T875 arg1Of SARS,","
R878 T876 T875 arg2Of MERS,","
R879 T875 T877 arg1Of ",",and
R880 T880 T877 arg2Of genes,and
R881 T880 T878 arg1Of genes,HKU1
R882 T880 T879 arg1Of genes,S
R883 T877 T881 arg1Of and,encode
R884 T886 T881 arg2Of ;,encode
R885 T885 T882 arg1Of sequons,many
R886 T885 T883 arg1Of sequons,N-linked
R887 T885 T884 arg1Of sequons,glycan
R888 T885 T886 arg1Of sequons,;
R889 T890 T886 arg2Of and,;
R890 T887 T888 arg1Of 23,","
R891 T889 T888 arg2Of 23,","
R892 T888 T890 arg1Of ",",and
R893 T891 T890 arg2Of 29,and
R894 T886 T892 arg1Of ;,","
R895 T886 T893 arg1Of ;,respectively
R896 T886 T894 arg1Of ;,(
R897 T895 T894 arg2Of Fig. 1a,(
R898 T896 T894 arg3Of ),(
R899 T899 T898 arg1Of sought,initially
R900 T897 T899 arg1Of We,sought
R901 T902 T899 arg2Of assess,sought
R902 T902 T900 arg1Of assess,to
R903 T902 T901 arg1Of assess,quantitatively
R904 T897 T902 arg1Of We,assess
R905 T904 T902 arg2Of composition,assess
R906 T904 T903 arg1Of composition,the
R907 T904 T905 arg1Of composition,of
R908 T907 T905 arg2Of carbohydrate,of
R909 T907 T906 arg1Of carbohydrate,the
R910 T908 T909 arg1Of structures,displayed
R911 T904 T909 arg2Of composition,displayed
R912 T909 T910 arg1Of displayed,on
R913 T913 T910 arg2Of glycoproteins,on
R914 T913 T911 arg1Of glycoproteins,the
R915 T913 T912 arg1Of glycoproteins,S
R916 T915 T914 arg2Of glycans,N-linked
R917 T915 T916 arg1Of glycans,were
R918 T919 T916 arg2Of ",",were
R919 T919 T917 arg1Of ",",enzymatically
R920 T915 T918 arg2Of glycans,released
R921 T918 T919 arg1Of released,","
R922 T923 T919 arg2Of and,","
R923 T923 T920 arg1Of and,fluorescently
R924 T915 T921 arg2Of glycans,labelled
R925 T923 T922 arg1Of and,","
R926 T921 T923 arg1Of labelled,and
R927 T924 T923 arg2Of subjected,and
R928 T915 T924 arg2Of glycans,subjected
R929 T924 T925 arg1Of subjected,to

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T38 173-185 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T39 216-229 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T42 173-185 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T43 216-229 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T44 240-247 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T44 1-5 Species denotes SARS NCBItxid:694009
T45 7-11 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T33 1-104 Sentence denotes SARS, MERS and HKU1 S genes encode many N-linked glycan sequons; 23, 23 and 29, respectively (Fig. 1a).
T34 105-230 Sentence denotes We initially sought to quantitatively assess the composition of the carbohydrate structures displayed on the S glycoproteins.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 1-5 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
293 1-5 Disease denotes SARS MESH:D045169
294 7-11 Disease denotes MERS MESH:D018352
275 41-56 Chemical denotes N-linked glycan
276 173-185 Chemical denotes carbohydrate MESH:D002241
277 231-247 Chemical denotes N-linked glycans

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2039 214-229 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T33 1-104 Sentence denotes SARS, MERS and HKU1 S genes encode many N-linked glycan sequons; 23, 23 and 29, respectively (Fig. 1a).
T34 105-230 Sentence denotes We initially sought to quantitatively assess the composition of the carbohydrate structures displayed on the S glycoproteins.