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PMC:7253482 / 518-869 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
28 165-169 Species denotes CoVs Tax:11118
29 227-238 Species denotes coronavirus Tax:11118
30 282-287 Species denotes HIV-1 Tax:11676
31 298-309 Species denotes Lassa virus Tax:11620
32 336-345 Species denotes influenza Tax:11320
34 37-43 Chemical denotes glycan MESH:D011134
35 95-107 Chemical denotes oligomannose
36 113-119 Chemical denotes glycan MESH:D011134
37 209-215 Chemical denotes glycan MESH:D011134
42 55-59 Disease denotes MERS MESH:D018352
43 151-155 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 263-271 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T4 282-285 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T5 310-322 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 151-155 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 336-345 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 13-14 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 182-183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 304-309 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 263-271 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T4 310-322 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T5 304-309 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T75 1-2 -COMMA- denotes ,
T76 3-5 PRP denotes we
T77 6-12 VBP denotes reveal
T78 13-14 DT denotes a
T79 15-23 JJ denotes specific
T80 24-28 NN denotes area
T81 29-31 IN denotes of
T82 32-36 JJ denotes high
T83 37-43 NN denotes glycan
T84 44-51 NN denotes density
T85 52-54 IN denotes on
T86 55-59 NNP denotes MERS
T87 60-61 NNP denotes S
T88 62-66 WDT denotes that
T89 67-74 VBZ denotes results
T90 75-77 IN denotes in
T91 78-81 DT denotes the
T92 82-91 NN denotes formation
T93 92-94 IN denotes of
T94 95-112 JJ denotes oligomannose-type
T95 113-119 NN denotes glycan
T96 120-128 NNS denotes clusters
T97 128-129 -COMMA- denotes ,
T98 130-135 WDT denotes which
T99 136-140 VBD denotes were
T100 141-147 JJ denotes absent
T101 148-150 IN denotes on
T102 151-155 NNS denotes SARS
T103 156-159 CC denotes and
T104 160-164 NN denotes HKU1
T105 165-169 NNS denotes CoVs
T106 171-173 PRP denotes We
T107 174-181 VBP denotes provide
T108 182-183 DT denotes a
T109 184-194 NN denotes comparison
T110 195-197 IN denotes of
T111 198-201 DT denotes the
T112 202-208 JJ denotes global
T113 209-215 NN denotes glycan
T114 216-223 NN denotes density
T115 224-226 IN denotes of
T116 227-238 NN denotes coronavirus
T117 239-245 NNS denotes spikes
T118 246-250 IN denotes with
T119 251-256 JJ denotes other
T120 257-262 JJ denotes viral
T121 263-271 NNS denotes proteins
T122 272-281 VBG denotes including
T123 282-287 NN denotes HIV-1
T124 288-296 NN denotes envelope
T125 296-297 -COMMA- denotes ,
T126 298-303 NNP denotes Lassa
T127 304-309 NN denotes virus
T128 310-322 NN denotes glycoprotein
T129 323-330 NN denotes complex
T130 330-331 -COMMA- denotes ,
T131 332-335 CC denotes and
T132 336-345 NN denotes influenza
R72 T77 T75 arg1Of reveal,","
R73 T76 T77 arg1Of we,reveal
R74 T80 T77 arg2Of area,reveal
R75 T80 T78 arg1Of area,a
R76 T80 T79 arg1Of area,specific
R77 T80 T81 arg1Of area,of
R78 T84 T81 arg2Of density,of
R79 T84 T82 arg1Of density,high
R80 T84 T83 arg1Of density,glycan
R81 T80 T85 arg1Of area,on
R82 T87 T85 arg2Of S,on
R83 T87 T86 arg1Of S,MERS
R84 T80 T88 arg1Of area,that
R85 T80 T89 arg1Of area,results
R86 T89 T90 arg1Of results,in
R87 T92 T90 arg2Of formation,in
R88 T92 T91 arg1Of formation,the
R89 T92 T93 arg1Of formation,of
R90 T96 T93 arg2Of clusters,of
R91 T96 T94 arg1Of clusters,oligomannose-type
R92 T96 T95 arg1Of clusters,glycan
R93 T96 T97 arg1Of clusters,","
R94 T96 T98 arg1Of clusters,which
R95 T96 T99 arg1Of clusters,were
R96 T100 T99 arg2Of absent,were
R97 T96 T100 arg1Of clusters,absent
R98 T100 T101 arg1Of absent,on
R99 T103 T101 arg2Of and,on
R100 T102 T103 arg1Of SARS,and
R101 T105 T103 arg2Of CoVs,and
R102 T105 T104 arg1Of CoVs,HKU1
R103 T106 T107 arg1Of We,provide
R104 T109 T107 arg2Of comparison,provide
R105 T109 T108 arg1Of comparison,a
R106 T109 T110 arg1Of comparison,of
R107 T114 T110 arg2Of density,of
R108 T114 T111 arg1Of density,the
R109 T114 T112 arg1Of density,global
R110 T114 T113 arg1Of density,glycan
R111 T114 T115 arg1Of density,of
R112 T117 T115 arg2Of spikes,of
R113 T117 T116 arg1Of spikes,coronavirus
R114 T109 T118 arg1Of comparison,with
R115 T121 T118 arg2Of proteins,with
R116 T121 T119 arg1Of proteins,other
R117 T121 T120 arg1Of proteins,viral
R118 T121 T122 arg1Of proteins,including
R119 T131 T122 arg2Of and,including
R120 T124 T123 arg1Of envelope,HIV-1
R121 T124 T125 arg1Of envelope,","
R122 T129 T125 arg2Of complex,","
R123 T129 T126 arg1Of complex,Lassa
R124 T129 T127 arg1Of complex,virus
R125 T129 T128 arg1Of complex,glycoprotein
R126 T131 T130 arg1Of and,","
R127 T125 T131 arg1Of ",",and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T3 263-271 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T4 282-285 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T5 310-322 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 263-271 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T4 310-322 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T4 55-59 Species denotes MERS NCBItxid:1335626
T5 151-155 Species denotes SARS NCBItxid:694009
T6 160-169 Species denotes HKU1 CoVs NCBItxid:290028
T7 282-287 Species denotes HIV-1 NCBItxid:11676
T8 298-309 Species denotes Lassa virus NCBItxid:11620

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 151-155 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 336-345 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
34 37-43 Chemical denotes glycan MESH:D011134
42 55-59 Disease denotes MERS MESH:D018352
35 95-107 Chemical denotes oligomannose
36 113-119 Chemical denotes glycan MESH:D011134
43 151-155 Disease denotes SARS MESH:D045169
28 165-169 Species denotes CoVs Tax:11118
37 209-215 Chemical denotes glycan MESH:D011134
29 227-238 Species denotes coronavirus Tax:11118
30 282-287 Species denotes HIV-1 Tax:11676
31 298-309 Species denotes Lassa virus Tax:11620
32 336-345 Species denotes influenza Tax:11320

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T133 310-322 Protein denotes glycoprotein https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T5 82-91 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T5 82-91 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 82-91 http://purl.obolibrary.org/obo/GO_0009058 denotes formation