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PMC:7253482 / 416-767 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 92-97 Gene denotes spike Gene:43740568
28 267-271 Species denotes CoVs Tax:11118
29 329-340 Species denotes coronavirus Tax:11118
34 139-145 Chemical denotes glycan MESH:D011134
35 197-209 Chemical denotes oligomannose
36 215-221 Chemical denotes glycan MESH:D011134
37 311-317 Chemical denotes glycan MESH:D011134
42 157-161 Disease denotes MERS MESH:D018352
43 253-257 Disease denotes SARS MESH:D045169

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 253-257 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 115-116 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 284-285 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T4 73-78 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T62 2-13 RB denotes extensively
T63 14-26 VBN denotes glycosylated
T64 26-27 -COMMA- denotes ,
T65 28-36 VBG denotes encoding
T66 37-43 IN denotes around
T67 44-49 CD denotes 66–87
T68 50-58 JJ denotes N-linked
T69 59-72 NN denotes glycosylation
T70 73-78 NNS denotes sites
T71 79-82 IN denotes per
T72 83-91 JJ denotes trimeric
T73 92-97 NN denotes spike
T74 99-103 RB denotes Here
T75 103-104 -COMMA- denotes ,
T76 105-107 PRP denotes we
T77 108-114 VBP denotes reveal
T78 115-116 DT denotes a
T79 117-125 JJ denotes specific
T80 126-130 NN denotes area
T81 131-133 IN denotes of
T82 134-138 JJ denotes high
T83 139-145 NN denotes glycan
T84 146-153 NN denotes density
T85 154-156 IN denotes on
T86 157-161 NNP denotes MERS
T87 162-163 NNP denotes S
T88 164-168 WDT denotes that
T89 169-176 VBZ denotes results
T90 177-179 IN denotes in
T91 180-183 DT denotes the
T92 184-193 NN denotes formation
T93 194-196 IN denotes of
T94 197-214 JJ denotes oligomannose-type
T95 215-221 NN denotes glycan
T96 222-230 NNS denotes clusters
T97 230-231 -COMMA- denotes ,
T98 232-237 WDT denotes which
T99 238-242 VBD denotes were
T100 243-249 JJ denotes absent
T101 250-252 IN denotes on
T102 253-257 NNS denotes SARS
T103 258-261 CC denotes and
T104 262-266 NN denotes HKU1
T105 267-271 NNS denotes CoVs
T106 273-275 PRP denotes We
T107 276-283 VBP denotes provide
T108 284-285 DT denotes a
T109 286-296 NN denotes comparison
T110 297-299 IN denotes of
T111 300-303 DT denotes the
T112 304-310 JJ denotes global
T113 311-317 NN denotes glycan
T114 318-325 NN denotes density
T115 326-328 IN denotes of
T116 329-340 NN denotes coronavirus
T117 341-347 NNS denotes spikes
R58 T63 T62 arg1Of glycosylated,extensively
R60 T63 T64 arg1Of glycosylated,","
R62 T70 T65 arg2Of sites,encoding
R63 T63 T65 modOf glycosylated,encoding
R64 T70 T66 arg1Of sites,around
R65 T70 T67 arg1Of sites,66–87
R66 T70 T68 arg1Of sites,N-linked
R67 T70 T69 arg1Of sites,glycosylation
R68 T70 T71 arg1Of sites,per
R69 T73 T71 arg2Of spike,per
R70 T73 T72 arg1Of spike,trimeric
R71 T77 T74 arg1Of reveal,Here
R72 T77 T75 arg1Of reveal,","
R73 T76 T77 arg1Of we,reveal
R74 T80 T77 arg2Of area,reveal
R75 T80 T78 arg1Of area,a
R76 T80 T79 arg1Of area,specific
R77 T80 T81 arg1Of area,of
R78 T84 T81 arg2Of density,of
R79 T84 T82 arg1Of density,high
R80 T84 T83 arg1Of density,glycan
R81 T80 T85 arg1Of area,on
R82 T87 T85 arg2Of S,on
R83 T87 T86 arg1Of S,MERS
R84 T80 T88 arg1Of area,that
R85 T80 T89 arg1Of area,results
R86 T89 T90 arg1Of results,in
R87 T92 T90 arg2Of formation,in
R88 T92 T91 arg1Of formation,the
R89 T92 T93 arg1Of formation,of
R90 T96 T93 arg2Of clusters,of
R91 T96 T94 arg1Of clusters,oligomannose-type
R92 T96 T95 arg1Of clusters,glycan
R93 T96 T97 arg1Of clusters,","
R94 T96 T98 arg1Of clusters,which
R95 T96 T99 arg1Of clusters,were
R96 T100 T99 arg2Of absent,were
R97 T96 T100 arg1Of clusters,absent
R98 T100 T101 arg1Of absent,on
R99 T103 T101 arg2Of and,on
R100 T102 T103 arg1Of SARS,and
R101 T105 T103 arg2Of CoVs,and
R102 T105 T104 arg1Of CoVs,HKU1
R103 T106 T107 arg1Of We,provide
R104 T109 T107 arg2Of comparison,provide
R105 T109 T108 arg1Of comparison,a
R106 T109 T110 arg1Of comparison,of
R107 T114 T110 arg2Of density,of
R108 T114 T111 arg1Of density,the
R109 T114 T112 arg1Of density,global
R110 T114 T113 arg1Of density,glycan
R111 T114 T115 arg1Of density,of
R112 T117 T115 arg2Of spikes,of
R113 T117 T116 arg1Of spikes,coronavirus

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T4 157-161 Species denotes MERS NCBItxid:1335626
T5 253-257 Species denotes SARS NCBItxid:694009
T6 262-271 Species denotes HKU1 CoVs NCBItxid:290028

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T6 99-272 Sentence denotes Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 253-257 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
24 92-97 Gene denotes spike Gene:43740568
34 139-145 Chemical denotes glycan MESH:D011134
42 157-161 Disease denotes MERS MESH:D018352
35 197-209 Chemical denotes oligomannose
36 215-221 Chemical denotes glycan MESH:D011134
43 253-257 Disease denotes SARS MESH:D045169
28 267-271 Species denotes CoVs Tax:11118
37 311-317 Chemical denotes glycan MESH:D011134
29 329-340 Species denotes coronavirus Tax:11118

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T4 59-72 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 184-193 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T4 59-72 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 184-193 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 50-72 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T5 59-72 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T6 184-193 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T6 99-272 Sentence denotes Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs.