PMC:7253482 / 35485-35912 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"1017","span":{"begin":29,"end":35},"obj":"Chemical"},{"id":"1021","span":{"begin":97,"end":113},"obj":"Chemical"},{"id":"1022","span":{"begin":258,"end":264},"obj":"Chemical"},{"id":"1023","span":{"begin":349,"end":356},"obj":"Chemical"}],"attributes":[{"id":"A1017","pred":"tao:has_database_id","subj":"1017","obj":"MESH:D011134"},{"id":"A1022","pred":"tao:has_database_id","subj":"1022","obj":"MESH:D011134"},{"id":"A1023","pred":"tao:has_database_id","subj":"1023","obj":"MESH:D011134"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T175","span":{"begin":118,"end":128},"obj":"Body_part"},{"id":"T176","span":{"begin":160,"end":168},"obj":"Body_part"},{"id":"T177","span":{"begin":312,"end":322},"obj":"Body_part"},{"id":"T178","span":{"begin":407,"end":417},"obj":"Body_part"}],"attributes":[{"id":"A175","pred":"fma_id","subj":"T175","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A176","pred":"fma_id","subj":"T176","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A177","pred":"fma_id","subj":"T177","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A178","pred":"fma_id","subj":"T178","obj":"http://purl.org/sig/ont/fma/fma82739"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T250","span":{"begin":118,"end":137},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T251","span":{"begin":118,"end":137},"obj":"http://purl.obolibrary.org/obo/PR_000036907"},{"id":"T252","span":{"begin":312,"end":331},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T253","span":{"begin":312,"end":331},"obj":"http://purl.obolibrary.org/obo/PR_000036907"},{"id":"T254","span":{"begin":407,"end":426},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T255","span":{"begin":407,"end":426},"obj":"http://purl.obolibrary.org/obo/PR_000036907"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T368","span":{"begin":106,"end":113},"obj":"Chemical"},{"id":"T369","span":{"begin":118,"end":137},"obj":"Chemical"},{"id":"T370","span":{"begin":118,"end":123},"obj":"Chemical"},{"id":"T371","span":{"begin":124,"end":128},"obj":"Chemical"},{"id":"T372","span":{"begin":258,"end":264},"obj":"Chemical"},{"id":"T373","span":{"begin":312,"end":331},"obj":"Chemical"},{"id":"T374","span":{"begin":312,"end":317},"obj":"Chemical"},{"id":"T375","span":{"begin":318,"end":322},"obj":"Chemical"},{"id":"T376","span":{"begin":349,"end":356},"obj":"Chemical"},{"id":"T377","span":{"begin":388,"end":395},"obj":"Chemical"},{"id":"T378","span":{"begin":407,"end":426},"obj":"Chemical"},{"id":"T379","span":{"begin":407,"end":412},"obj":"Chemical"},{"id":"T380","span":{"begin":413,"end":417},"obj":"Chemical"}],"attributes":[{"id":"A368","pred":"chebi_id","subj":"T368","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A369","pred":"chebi_id","subj":"T369","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A370","pred":"chebi_id","subj":"T370","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A371","pred":"chebi_id","subj":"T371","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A372","pred":"chebi_id","subj":"T372","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A373","pred":"chebi_id","subj":"T373","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A374","pred":"chebi_id","subj":"T374","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A375","pred":"chebi_id","subj":"T375","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A376","pred":"chebi_id","subj":"T376","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A377","pred":"chebi_id","subj":"T377","obj":"http://purl.obolibrary.org/obo/CHEBI_46787"},{"id":"A378","pred":"chebi_id","subj":"T378","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A379","pred":"chebi_id","subj":"T379","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A380","pred":"chebi_id","subj":"T380","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T173","span":{"begin":118,"end":128},"obj":"Body_part"},{"id":"T174","span":{"begin":160,"end":168},"obj":"Body_part"},{"id":"T175","span":{"begin":312,"end":322},"obj":"Body_part"},{"id":"T176","span":{"begin":407,"end":417},"obj":"Body_part"}],"attributes":[{"id":"A173","pred":"fma_id","subj":"T173","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A174","pred":"fma_id","subj":"T174","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A175","pred":"fma_id","subj":"T175","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A176","pred":"fma_id","subj":"T176","obj":"http://purl.org/sig/ont/fma/fma82739"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T255","span":{"begin":106,"end":113},"obj":"Chemical"},{"id":"T256","span":{"begin":118,"end":137},"obj":"Chemical"},{"id":"T257","span":{"begin":258,"end":264},"obj":"Chemical"},{"id":"T258","span":{"begin":312,"end":331},"obj":"Chemical"},{"id":"T259","span":{"begin":349,"end":356},"obj":"Chemical"},{"id":"T260","span":{"begin":407,"end":426},"obj":"Chemical"}],"attributes":[{"id":"A255","pred":"chebi_id","subj":"T255","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A256","pred":"chebi_id","subj":"T256","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A257","pred":"chebi_id","subj":"T257","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A258","pred":"chebi_id","subj":"T258","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A259","pred":"chebi_id","subj":"T259","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A260","pred":"chebi_id","subj":"T260","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T215","span":{"begin":0,"end":43},"obj":"Sentence"},{"id":"T216","span":{"begin":44,"end":257},"obj":"Sentence"},{"id":"T217","span":{"begin":258,"end":427},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"1017","span":{"begin":29,"end":35},"obj":"Chemical"},{"id":"1021","span":{"begin":97,"end":113},"obj":"Chemical"},{"id":"1022","span":{"begin":258,"end":264},"obj":"Chemical"},{"id":"1023","span":{"begin":349,"end":356},"obj":"Chemical"}],"attributes":[{"id":"A1017","pred":"pubann:denotes","subj":"1017","obj":"MESH:D011134"},{"id":"A1022","pred":"pubann:denotes","subj":"1022","obj":"MESH:D011134"},{"id":"A1023","pred":"pubann:denotes","subj":"1023","obj":"MESH:D011134"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}

{"project":"LitCovid-sentences","denotations":[{"id":"T215","span":{"begin":0,"end":43},"obj":"Sentence"},{"id":"T216","span":{"begin":44,"end":257},"obj":"Sentence"},{"id":"T217","span":{"begin":258,"end":427},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Clustering analysis of viral glycan shields\nSolvent-accessible residues and interactions between N-linked glycans and amino-acid residues were calculated using Proteins, Interfaces, Structures and Assemblies (PISA) European Bioinformatics Institute (EBI)83. Glycan shield density was calculated by the number of amino-acid residues interacting with glycans divided by the total number of solvent-accessible amino-acid residues."}