PMC:7253482 / 33034-33260 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"999","span":{"begin":188,"end":193},"obj":"Gene"},{"id":"1002","span":{"begin":61,"end":69},"obj":"Species"}],"attributes":[{"id":"A999","pred":"tao:has_database_id","subj":"999","obj":"Gene:43740568"},{"id":"A1002","pred":"tao:has_database_id","subj":"1002","obj":"Tax:1335626"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T170","span":{"begin":94,"end":100},"obj":"Body_part"},{"id":"T171","span":{"begin":194,"end":198},"obj":"Body_part"}],"attributes":[{"id":"A170","pred":"fma_id","subj":"T170","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A171","pred":"fma_id","subj":"T171","obj":"http://purl.org/sig/ont/fma/fma74402"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T238","span":{"begin":194,"end":198},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T168","span":{"begin":94,"end":100},"obj":"Body_part"},{"id":"T169","span":{"begin":194,"end":198},"obj":"Body_part"}],"attributes":[{"id":"A168","pred":"fma_id","subj":"T168","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A169","pred":"fma_id","subj":"T169","obj":"http://purl.org/sig/ont/fma/fma74402"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T207","span":{"begin":61,"end":69},"obj":"Species"}],"attributes":[{"id":"A207","pred":"ncbi_taxonomy_id","subj":"T207","obj":"NCBItxid:1335626"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T198","span":{"begin":57,"end":138},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"1002","span":{"begin":61,"end":69},"obj":"Species"},{"id":"999","span":{"begin":188,"end":193},"obj":"Gene"}],"attributes":[{"id":"A1002","pred":"pubann:denotes","subj":"1002","obj":"Tax:1335626"},{"id":"A999","pred":"pubann:denotes","subj":"999","obj":"Gene:43740568"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}

{"project":"LitCovid-sentences","denotations":[{"id":"T198","span":{"begin":57,"end":138},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"5 bp) were downloaded from GenBank and manually aligned. For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), ex"}