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PMC:7253482 / 3292-3675 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
137 27-33 Chemical denotes glycan MESH:D011134
138 87-99 Chemical denotes oligomannose
139 105-112 Chemical denotes glycans MESH:D011134
140 183-189 Chemical denotes glycan MESH:D011134
141 222-229 Chemical denotes glycans MESH:D011134
142 367-374 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T23 265-277 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T24 278-281 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 324-325 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 380-382 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T22 105-112 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T23 265-277 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T18 354-358 http://purl.obolibrary.org/obo/IDO_0000531 denotes host

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T507 0-8 JJ denotes Previous
T508 9-17 NNS denotes analyses
T509 18-20 IN denotes of
T510 21-26 JJ denotes viral
T511 27-33 NN denotes glycan
T512 34-41 NNS denotes shields
T513 42-46 VBP denotes have
T514 47-55 VBN denotes revealed
T515 56-59 DT denotes the
T516 60-68 NN denotes presence
T517 69-71 IN denotes of
T518 72-86 JJ denotes underprocessed
T519 87-104 JJ denotes oligomannose-type
T520 105-112 NNS denotes glycans
T521 113-117 WDT denotes that
T522 118-127 RB denotes seemingly
T523 128-133 VBP denotes arise
T524 134-137 JJ denotes due
T525 138-140 TO denotes to
T526 141-147 JJ denotes steric
T527 148-159 NNS denotes constraints
T528 160-164 WDT denotes that
T529 165-172 VBP denotes prevent
T530 173-179 NN denotes access
T531 180-182 IN denotes of
T532 183-189 NN denotes glycan
T533 190-200 NN denotes processing
T534 201-208 NNS denotes enzymes
T535 209-211 TO denotes to
T536 212-221 NN denotes substrate
T537 222-237 NN denotes glycans24,27,28
T538 237-238 -COMMA- denotes ,
T539 239-249 RB denotes especially
T540 250-254 WRB denotes when
T541 255-258 DT denotes the
T542 259-264 JJ denotes viral
T543 265-277 NN denotes glycoprotein
T544 278-281 VBZ denotes has
T545 282-289 VBN denotes evolved
T546 290-292 TO denotes to
T547 293-297 VB denotes mask
T548 298-309 JJ denotes immunogenic
T549 310-318 NNS denotes epitopes
T550 319-323 IN denotes with
T551 324-325 DT denotes a
T552 326-338 RB denotes particularly
T553 339-344 JJ denotes dense
T554 345-350 NN denotes array
T555 351-353 IN denotes of
T556 354-366 JJ denotes host-derived
T557 367-382 NN denotes glycans26,29–34
R506 T508 T507 arg1Of analyses,Previous
R507 T508 T509 arg1Of analyses,of
R508 T512 T509 arg2Of shields,of
R509 T512 T510 arg1Of shields,viral
R510 T512 T511 arg1Of shields,glycan
R511 T508 T513 arg1Of analyses,have
R512 T514 T513 arg2Of revealed,have
R513 T508 T514 arg1Of analyses,revealed
R514 T516 T514 arg2Of presence,revealed
R515 T516 T515 arg1Of presence,the
R516 T516 T517 arg1Of presence,of
R517 T520 T517 arg2Of glycans,of
R518 T520 T518 arg1Of glycans,underprocessed
R519 T520 T519 arg1Of glycans,oligomannose-type
R520 T520 T521 arg1Of glycans,that
R521 T523 T522 arg1Of arise,seemingly
R522 T520 T523 arg1Of glycans,arise
R523 T525 T524 arg1Of to,due
R524 T523 T525 arg1Of arise,to
R525 T527 T525 arg2Of constraints,to
R526 T527 T526 arg1Of constraints,steric
R527 T527 T528 arg1Of constraints,that
R528 T527 T529 arg1Of constraints,prevent
R529 T530 T529 arg2Of access,prevent
R530 T530 T531 arg1Of access,of
R531 T534 T531 arg2Of enzymes,of
R532 T534 T532 arg1Of enzymes,glycan
R533 T534 T533 arg1Of enzymes,processing
R534 T530 T535 arg1Of access,to
R535 T537 T535 arg2Of "glycans24,27,28",to
R536 T537 T536 arg1Of "glycans24,27,28",substrate
R537 T523 T538 arg1Of arise,","
R538 T523 T539 arg1Of arise,especially
R539 T545 T539 arg2Of evolved,especially
R540 T539 T540 arg1Of especially,when
R541 T543 T541 arg1Of glycoprotein,the
R542 T543 T542 arg1Of glycoprotein,viral
R543 T543 T544 arg1Of glycoprotein,has
R544 T545 T544 arg2Of evolved,has
R545 T543 T545 arg1Of glycoprotein,evolved
R546 T547 T545 arg2Of mask,evolved
R547 T547 T546 arg1Of mask,to
R548 T543 T547 arg1Of glycoprotein,mask
R549 T549 T547 arg2Of epitopes,mask
R550 T549 T548 arg1Of epitopes,immunogenic
R551 T547 T550 arg1Of mask,with
R552 T554 T550 arg2Of array,with
R553 T554 T551 arg1Of array,a
R554 T553 T552 arg1Of dense,particularly
R555 T554 T553 arg1Of array,dense
R556 T554 T555 arg1Of array,of
R557 T557 T555 arg2Of "glycans26,29–34",of
R558 T557 T556 arg1Of "glycans26,29–34",host-derived

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T23 265-277 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T20 105-112 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T21 265-277 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T21 0-383 Sentence denotes Previous analyses of viral glycan shields have revealed the presence of underprocessed oligomannose-type glycans that seemingly arise due to steric constraints that prevent access of glycan processing enzymes to substrate glycans24,27,28, especially when the viral glycoprotein has evolved to mask immunogenic epitopes with a particularly dense array of host-derived glycans26,29–34.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
137 27-33 Chemical denotes glycan MESH:D011134
138 87-99 Chemical denotes oligomannose
139 105-112 Chemical denotes glycans MESH:D011134
140 183-189 Chemical denotes glycan MESH:D011134
141 222-229 Chemical denotes glycans MESH:D011134
142 367-374 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1548 265-277 Protein denotes glycoprotein https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-383 Sentence denotes Previous analyses of viral glycan shields have revealed the presence of underprocessed oligomannose-type glycans that seemingly arise due to steric constraints that prevent access of glycan processing enzymes to substrate glycans24,27,28, especially when the viral glycoprotein has evolved to mask immunogenic epitopes with a particularly dense array of host-derived glycans26,29–34.