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PMC:7253482 / 28321-29088 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
910 9-16 Chemical denotes glycans MESH:D011134
911 63-73 Chemical denotes BEH Glycan
912 547-559 Chemical denotes oligomannose
913 565-572 Chemical denotes glycans MESH:D011134
914 625-632 Chemical denotes glycans MESH:D011134
915 667-671 Chemical denotes PVDF MESH:C024865

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T155 672-679 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T189 0-8 http://purl.obolibrary.org/obo/CLO_0007225 denotes Labelled
T190 37-38 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T191 117-127 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrument
T192 260-262 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T193 264-265 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T194 271-272 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T195 315-316 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T196 324-325 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T197 355-356 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T198 361-362 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T199 393-394 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T200 399-400 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T201 426-428 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T202 430-431 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T203 437-438 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T204 467-468 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T205 509-510 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T206 616-624 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T207 665-666 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 688-696 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T279 9-16 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T280 67-73 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T281 459-466 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T282 479-495 Chemical denotes ammonium formate http://purl.obolibrary.org/obo/CHEBI_63050
T283 479-487 Chemical denotes ammonium http://purl.obolibrary.org/obo/CHEBI_28938
T284 488-495 Chemical denotes formate http://purl.obolibrary.org/obo/CHEBI_15740|http://purl.obolibrary.org/obo/CHEBI_52343
T286 515-527 Chemical denotes acetonitrile http://purl.obolibrary.org/obo/CHEBI_38472
T287 565-572 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T288 625-632 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T289 672-679 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T154 672-679 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T192 9-16 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T193 67-73 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T194 479-495 Chemical denotes ammonium formate http://purl.obolibrary.org/obo/CHEBI_63050
T195 515-527 Chemical denotes acetonitrile http://purl.obolibrary.org/obo/CHEBI_38472
T196 565-572 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T197 625-632 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T198 672-679 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T161 0-212 Sentence denotes Labelled glycans were analysed using a 2.1 mm × 150 mm Acquity BEH Glycan column (Waters) on an Acquity H-Class UPLC instrument (Waters), with fluorescence measurements occurring at λex = 310 nm and λem = 370 nm.
T162 213-259 Sentence denotes The following gradient was used: time (t) = 0:
T163 260-308 Sentence denotes 22% A, 78% B (flow rate = 0.5 mL/min); t = 38.5:
T164 309-349 Sentence denotes 44.1% A, 55.9% B (0.5 mL/min); t = 39.5:
T165 350-387 Sentence denotes 100% A, 0% B (0.25 mL/min); t = 44.5:
T166 388-425 Sentence denotes 100% A, 0% B (0.25 mL/min); t = 46.5:
T167 426-528 Sentence denotes 22% A, 78% B (0.5 mL/min), where solvent A was 50 mM ammonium formate (pH 4.4) and B was acetonitrile.
T168 529-709 Sentence denotes Quantification of oligomannose-type glycans was achieved by digestion of fluorescently labelled glycans with Endo H, and clean-up using a PVDF protein-binding membrane (Millipore).
T169 710-767 Sentence denotes Empower 3 software (Waters) was used for data processing.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
911 63-73 Chemical denotes BEH Glycan
912 547-559 Chemical denotes oligomannose
913 565-572 Chemical denotes glycans MESH:D011134
914 625-632 Chemical denotes glycans MESH:D011134
915 667-671 Chemical denotes PVDF MESH:C024865

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T58 589-598 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T51 589-598 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T56 589-598 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T161 0-212 Sentence denotes Labelled glycans were analysed using a 2.1 mm × 150 mm Acquity BEH Glycan column (Waters) on an Acquity H-Class UPLC instrument (Waters), with fluorescence measurements occurring at λex = 310 nm and λem = 370 nm.
T162 213-259 Sentence denotes The following gradient was used: time (t) = 0:
T163 260-308 Sentence denotes 22% A, 78% B (flow rate = 0.5 mL/min); t = 38.5:
T164 309-349 Sentence denotes 44.1% A, 55.9% B (0.5 mL/min); t = 39.5:
T165 350-387 Sentence denotes 100% A, 0% B (0.25 mL/min); t = 44.5:
T166 388-425 Sentence denotes 100% A, 0% B (0.25 mL/min); t = 46.5:
T167 426-528 Sentence denotes 22% A, 78% B (0.5 mL/min), where solvent A was 50 mM ammonium formate (pH 4.4) and B was acetonitrile.
T168 529-709 Sentence denotes Quantification of oligomannose-type glycans was achieved by digestion of fluorescently labelled glycans with Endo H, and clean-up using a PVDF protein-binding membrane (Millipore).
T169 710-767 Sentence denotes Empower 3 software (Waters) was used for data processing.