PMC:7253482 / 27714-28289 JSONTXT

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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"888","span":{"begin":8,"end":19},"obj":"Species"},{"id":"889","span":{"begin":61,"end":73},"obj":"Chemical"},{"id":"890","span":{"begin":78,"end":83},"obj":"Chemical"},{"id":"891","span":{"begin":163,"end":168},"obj":"Chemical"},{"id":"892","span":{"begin":238,"end":254},"obj":"Chemical"},{"id":"893","span":{"begin":293,"end":305},"obj":"Chemical"},{"id":"894","span":{"begin":356,"end":368},"obj":"Chemical"},{"id":"895","span":{"begin":382,"end":405},"obj":"Chemical"},{"id":"896","span":{"begin":413,"end":417},"obj":"Chemical"},{"id":"897","span":{"begin":434,"end":445},"obj":"Chemical"},{"id":"898","span":{"begin":480,"end":492},"obj":"Chemical"},{"id":"899","span":{"begin":502,"end":509},"obj":"Chemical"},{"id":"900","span":{"begin":530,"end":536},"obj":"Chemical"},{"id":"901","span":{"begin":537,"end":542},"obj":"Chemical"}],"attributes":[{"id":"A888","pred":"tao:has_database_id","subj":"888","obj":"Tax:11118"},{"id":"A889","pred":"tao:has_database_id","subj":"889","obj":"MESH:C032159"},{"id":"A890","pred":"tao:has_database_id","subj":"890","obj":"MESH:D014867"},{"id":"A891","pred":"tao:has_database_id","subj":"891","obj":"MESH:D014867"},{"id":"A893","pred":"tao:has_database_id","subj":"893","obj":"MESH:D011342"},{"id":"A894","pred":"tao:has_database_id","subj":"894","obj":"MESH:D011342"},{"id":"A896","pred":"tao:has_database_id","subj":"896","obj":"MESH:D004121"},{"id":"A897","pred":"tao:has_database_id","subj":"897","obj":"MESH:D019342"},{"id":"A898","pred":"tao:has_database_id","subj":"898","obj":"MESH:D011342"},{"id":"A899","pred":"tao:has_database_id","subj":"899","obj":"MESH:D011134"},{"id":"A901","pred":"tao:has_database_id","subj":"901","obj":"MESH:D000577"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T185","span":{"begin":101,"end":102},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T186","span":{"begin":279,"end":287},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T187","span":{"begin":327,"end":336},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T188","span":{"begin":493,"end":501},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T264","span":{"begin":61,"end":73},"obj":"Chemical"},{"id":"T265","span":{"begin":78,"end":83},"obj":"Chemical"},{"id":"T266","span":{"begin":163,"end":168},"obj":"Chemical"},{"id":"T267","span":{"begin":247,"end":254},"obj":"Chemical"},{"id":"T268","span":{"begin":293,"end":305},"obj":"Chemical"},{"id":"T269","span":{"begin":337,"end":344},"obj":"Chemical"},{"id":"T270","span":{"begin":356,"end":368},"obj":"Chemical"},{"id":"T271","span":{"begin":382,"end":388},"obj":"Chemical"},{"id":"T272","span":{"begin":413,"end":417},"obj":"Chemical"},{"id":"T273","span":{"begin":434,"end":445},"obj":"Chemical"},{"id":"T274","span":{"begin":441,"end":445},"obj":"Chemical"},{"id":"T275","span":{"begin":480,"end":492},"obj":"Chemical"},{"id":"T276","span":{"begin":502,"end":509},"obj":"Chemical"},{"id":"T277","span":{"begin":537,"end":542},"obj":"Chemical"}],"attributes":[{"id":"A264","pred":"chebi_id","subj":"T264","obj":"http://purl.obolibrary.org/obo/CHEBI_38472"},{"id":"A265","pred":"chebi_id","subj":"T265","obj":"http://purl.obolibrary.org/obo/CHEBI_15377"},{"id":"A266","pred":"chebi_id","subj":"T266","obj":"http://purl.obolibrary.org/obo/CHEBI_15377"},{"id":"A267","pred":"chebi_id","subj":"T267","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A268","pred":"chebi_id","subj":"T268","obj":"http://purl.obolibrary.org/obo/CHEBI_8428"},{"id":"A269","pred":"chebi_id","subj":"T269","obj":"http://purl.obolibrary.org/obo/CHEBI_60004"},{"id":"A270","pred":"chebi_id","subj":"T270","obj":"http://purl.obolibrary.org/obo/CHEBI_8428"},{"id":"A271","pred":"chebi_id","subj":"T271","obj":"http://purl.obolibrary.org/obo/CHEBI_26708"},{"id":"A272","pred":"chebi_id","subj":"T272","obj":"http://purl.obolibrary.org/obo/CHEBI_28262"},{"id":"A273","pred":"chebi_id","subj":"T273","obj":"http://purl.obolibrary.org/obo/CHEBI_15366"},{"id":"A274","pred":"chebi_id","subj":"T274","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A275","pred":"chebi_id","subj":"T275","obj":"http://purl.obolibrary.org/obo/CHEBI_8428"},{"id":"A276","pred":"chebi_id","subj":"T276","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A277","pred":"chebi_id","subj":"T277","obj":"http://purl.obolibrary.org/obo/CHEBI_32988"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-sample-CHEBI

    {"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T178","span":{"begin":61,"end":73},"obj":"Chemical"},{"id":"T179","span":{"begin":78,"end":83},"obj":"Chemical"},{"id":"T180","span":{"begin":163,"end":168},"obj":"Chemical"},{"id":"T181","span":{"begin":247,"end":254},"obj":"Chemical"},{"id":"T182","span":{"begin":293,"end":305},"obj":"Chemical"},{"id":"T183","span":{"begin":337,"end":344},"obj":"Chemical"},{"id":"T184","span":{"begin":356,"end":368},"obj":"Chemical"},{"id":"T185","span":{"begin":382,"end":388},"obj":"Chemical"},{"id":"T186","span":{"begin":413,"end":417},"obj":"Chemical"},{"id":"T187","span":{"begin":434,"end":445},"obj":"Chemical"},{"id":"T188","span":{"begin":480,"end":492},"obj":"Chemical"},{"id":"T189","span":{"begin":502,"end":509},"obj":"Chemical"},{"id":"T190","span":{"begin":537,"end":542},"obj":"Chemical"}],"attributes":[{"id":"A189","pred":"chebi_id","subj":"T189","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A180","pred":"chebi_id","subj":"T180","obj":"http://purl.obolibrary.org/obo/CHEBI_15377"},{"id":"A188","pred":"chebi_id","subj":"T188","obj":"http://purl.obolibrary.org/obo/CHEBI_8428"},{"id":"A187","pred":"chebi_id","subj":"T187","obj":"http://purl.obolibrary.org/obo/CHEBI_15366"},{"id":"A190","pred":"chebi_id","subj":"T190","obj":"http://purl.obolibrary.org/obo/CHEBI_32988"},{"id":"A185","pred":"chebi_id","subj":"T185","obj":"http://purl.obolibrary.org/obo/CHEBI_26708"},{"id":"A184","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_8428"},{"id":"A178","pred":"chebi_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/CHEBI_38472"},{"id":"A186","pred":"chebi_id","subj":"T186","obj":"http://purl.obolibrary.org/obo/CHEBI_28262"},{"id":"A182","pred":"chebi_id","subj":"T182","obj":"http://purl.obolibrary.org/obo/CHEBI_8428"},{"id":"A183","pred":"chebi_id","subj":"T183","obj":"http://purl.obolibrary.org/obo/CHEBI_60004"},{"id":"A179","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_15377"},{"id":"A181","pred":"chebi_id","subj":"T181","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-sample-sentences

    {"project":"LitCovid-sample-sentences","denotations":[{"id":"T156","span":{"begin":0,"end":121},"obj":"Sentence"},{"id":"T157","span":{"begin":122,"end":216},"obj":"Sentence"},{"id":"T158","span":{"begin":217,"end":479},"obj":"Sentence"},{"id":"T159","span":{"begin":480,"end":575},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-sample-Pubtator

    {"project":"LitCovid-sample-Pubtator","denotations":[{"id":"888","span":{"begin":8,"end":19},"obj":"Species"},{"id":"889","span":{"begin":61,"end":73},"obj":"Chemical"},{"id":"890","span":{"begin":78,"end":83},"obj":"Chemical"},{"id":"891","span":{"begin":163,"end":168},"obj":"Chemical"},{"id":"892","span":{"begin":238,"end":254},"obj":"Chemical"},{"id":"893","span":{"begin":293,"end":305},"obj":"Chemical"},{"id":"894","span":{"begin":356,"end":368},"obj":"Chemical"},{"id":"895","span":{"begin":382,"end":405},"obj":"Chemical"},{"id":"896","span":{"begin":413,"end":417},"obj":"Chemical"},{"id":"897","span":{"begin":434,"end":445},"obj":"Chemical"},{"id":"898","span":{"begin":480,"end":492},"obj":"Chemical"},{"id":"910","span":{"begin":502,"end":509},"obj":"Chemical"},{"id":"899","span":{"begin":502,"end":509},"obj":"Chemical"},{"id":"900","span":{"begin":530,"end":536},"obj":"Chemical"},{"id":"901","span":{"begin":537,"end":542},"obj":"Chemical"}],"attributes":[{"id":"A889","pred":"pubann:denotes","subj":"889","obj":"MESH:C032159"},{"id":"A890","pred":"pubann:denotes","subj":"890","obj":"MESH:D014867"},{"id":"A897","pred":"pubann:denotes","subj":"897","obj":"MESH:D019342"},{"id":"A894","pred":"pubann:denotes","subj":"894","obj":"MESH:D011342"},{"id":"A899","pred":"pubann:denotes","subj":"899","obj":"MESH:D011134"},{"id":"A910","pred":"pubann:denotes","subj":"910","obj":"MESH:D011134"},{"id":"A888","pred":"pubann:denotes","subj":"888","obj":"Tax:11118"},{"id":"A898","pred":"pubann:denotes","subj":"898","obj":"MESH:D011342"},{"id":"A896","pred":"pubann:denotes","subj":"896","obj":"MESH:D004121"},{"id":"A901","pred":"pubann:denotes","subj":"901","obj":"MESH:D000577"},{"id":"A891","pred":"pubann:denotes","subj":"891","obj":"MESH:D014867"},{"id":"A893","pred":"pubann:denotes","subj":"893","obj":"MESH:D011342"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-sample-UniProt

    {"project":"LitCovid-sample-UniProt","denotations":[{"id":"T5818","span":{"begin":188,"end":194},"obj":"Protein"}],"attributes":[{"id":"A5818","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q9TW67"},{"id":"A5819","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q9NR70"},{"id":"A5820","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q9NBD6"},{"id":"A5821","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q9JI78"},{"id":"A5822","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q9CTK3"},{"id":"A5823","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q9BVR8"},{"id":"A5824","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q96IV0"},{"id":"A5825","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q8K113"},{"id":"A5826","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q6PJD8"},{"id":"A5827","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q5ZJM3"},{"id":"A5828","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q5XI55"},{"id":"A5829","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q5WNE3"},{"id":"A5830","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q59FB1"},{"id":"A5831","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q503I8"},{"id":"A5832","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/Q4R6F3"},{"id":"A5833","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/B4DJE9"},{"id":"A5834","pred":"uniprot_id","subj":"T5818","obj":"https://www.uniprot.org/uniprot/A8X5N2"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-sample-PD-GO-BP-0

    {"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T57","span":{"begin":188,"end":196},"obj":"http://purl.obolibrary.org/obo/GO_0000224"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T156","span":{"begin":0,"end":121},"obj":"Sentence"},{"id":"T157","span":{"begin":122,"end":216},"obj":"Sentence"},{"id":"T158","span":{"begin":217,"end":479},"obj":"Sentence"},{"id":"T159","span":{"begin":480,"end":575},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations)."}