PMC:7253482 / 27714-28289
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 888 | 8-19 | Species | denotes | coronavirus | Tax:11118 |
| 889 | 61-73 | Chemical | denotes | acetonitrile | MESH:C032159 |
| 890 | 78-83 | Chemical | denotes | water | MESH:D014867 |
| 891 | 163-168 | Chemical | denotes | water | MESH:D014867 |
| 892 | 238-254 | Chemical | denotes | N-linked glycans | |
| 893 | 293-305 | Chemical | denotes | procainamide | MESH:D011342 |
| 894 | 356-368 | Chemical | denotes | procainamide | MESH:D011342 |
| 895 | 382-405 | Chemical | denotes | sodium cyanoborohydrate | |
| 896 | 413-417 | Chemical | denotes | DMSO | MESH:D004121 |
| 897 | 434-445 | Chemical | denotes | acetic acid | MESH:D019342 |
| 898 | 480-492 | Chemical | denotes | Procainamide | MESH:D011342 |
| 899 | 502-509 | Chemical | denotes | glycans | MESH:D011134 |
| 900 | 530-536 | Chemical | denotes | Spe-ed | |
| 901 | 537-542 | Chemical | denotes | Amide | MESH:D000577 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T185 | 101-102 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T186 | 279-287 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelled |
| T187 | 327-336 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelling |
| T188 | 493-501 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelled |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T264 | 61-73 | Chemical | denotes | acetonitrile | http://purl.obolibrary.org/obo/CHEBI_38472 |
| T265 | 78-83 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T266 | 163-168 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T267 | 247-254 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T268 | 293-305 | Chemical | denotes | procainamide | http://purl.obolibrary.org/obo/CHEBI_8428 |
| T269 | 337-344 | Chemical | denotes | mixture | http://purl.obolibrary.org/obo/CHEBI_60004 |
| T270 | 356-368 | Chemical | denotes | procainamide | http://purl.obolibrary.org/obo/CHEBI_8428 |
| T271 | 382-388 | Chemical | denotes | sodium | http://purl.obolibrary.org/obo/CHEBI_26708 |
| T272 | 413-417 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T273 | 434-445 | Chemical | denotes | acetic acid | http://purl.obolibrary.org/obo/CHEBI_15366 |
| T274 | 441-445 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T275 | 480-492 | Chemical | denotes | Procainamide | http://purl.obolibrary.org/obo/CHEBI_8428 |
| T276 | 502-509 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T277 | 537-542 | Chemical | denotes | Amide | http://purl.obolibrary.org/obo/CHEBI_32988 |
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T178 | 61-73 | Chemical | denotes | acetonitrile | http://purl.obolibrary.org/obo/CHEBI_38472 |
| T179 | 78-83 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T180 | 163-168 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T181 | 247-254 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T182 | 293-305 | Chemical | denotes | procainamide | http://purl.obolibrary.org/obo/CHEBI_8428 |
| T183 | 337-344 | Chemical | denotes | mixture | http://purl.obolibrary.org/obo/CHEBI_60004 |
| T184 | 356-368 | Chemical | denotes | procainamide | http://purl.obolibrary.org/obo/CHEBI_8428 |
| T185 | 382-388 | Chemical | denotes | sodium | http://purl.obolibrary.org/obo/CHEBI_26708 |
| T186 | 413-417 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T187 | 434-445 | Chemical | denotes | acetic acid | http://purl.obolibrary.org/obo/CHEBI_15366 |
| T188 | 480-492 | Chemical | denotes | Procainamide | http://purl.obolibrary.org/obo/CHEBI_8428 |
| T189 | 502-509 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T190 | 537-542 | Chemical | denotes | Amide | http://purl.obolibrary.org/obo/CHEBI_32988 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T156 | 0-121 | Sentence | denotes | Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. |
| T157 | 122-216 | Sentence | denotes | The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. |
| T158 | 217-479 | Sentence | denotes | Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. |
| T159 | 480-575 | Sentence | denotes | Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations). |
LitCovid-sample-Pubtator
| Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
|---|---|---|---|---|---|
| 888 | 8-19 | Species | denotes | coronavirus | Tax:11118 |
| 889 | 61-73 | Chemical | denotes | acetonitrile | MESH:C032159 |
| 890 | 78-83 | Chemical | denotes | water | MESH:D014867 |
| 891 | 163-168 | Chemical | denotes | water | MESH:D014867 |
| 892 | 238-254 | Chemical | denotes | N-linked glycans | |
| 893 | 293-305 | Chemical | denotes | procainamide | MESH:D011342 |
| 894 | 356-368 | Chemical | denotes | procainamide | MESH:D011342 |
| 895 | 382-405 | Chemical | denotes | sodium cyanoborohydrate | |
| 896 | 413-417 | Chemical | denotes | DMSO | MESH:D004121 |
| 897 | 434-445 | Chemical | denotes | acetic acid | MESH:D019342 |
| 898 | 480-492 | Chemical | denotes | Procainamide | MESH:D011342 |
| 910 | 502-509 | Chemical | denotes | glycans | MESH:D011134 |
| 899 | 502-509 | Chemical | denotes | glycans | MESH:D011134 |
| 900 | 530-536 | Chemical | denotes | Spe-ed | |
| 901 | 537-542 | Chemical | denotes | Amide | MESH:D000577 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T5818 | 188-194 | Protein | denotes | PNGase | https://www.uniprot.org/uniprot/Q9TW67|https://www.uniprot.org/uniprot/Q9NR70|https://www.uniprot.org/uniprot/Q9NBD6|https://www.uniprot.org/uniprot/Q9JI78|https://www.uniprot.org/uniprot/Q9CTK3|https://www.uniprot.org/uniprot/Q9BVR8|https://www.uniprot.org/uniprot/Q96IV0|https://www.uniprot.org/uniprot/Q8K113|https://www.uniprot.org/uniprot/Q6PJD8|https://www.uniprot.org/uniprot/Q5ZJM3|https://www.uniprot.org/uniprot/Q5XI55|https://www.uniprot.org/uniprot/Q5WNE3|https://www.uniprot.org/uniprot/Q59FB1|https://www.uniprot.org/uniprot/Q503I8|https://www.uniprot.org/uniprot/Q4R6F3|https://www.uniprot.org/uniprot/B4DJE9|https://www.uniprot.org/uniprot/A8X5N2 |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 188-196 | http://purl.obolibrary.org/obo/GO_0000224 | denotes | PNGase F |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T156 | 0-121 | Sentence | denotes | Excised coronavirus S gel bands were washed alternately with acetonitrile and water before drying in a vacuum centrifuge. |
| T157 | 122-216 | Sentence | denotes | The bands were rehydrated with 100 μL of water and incubated with PNGase F at 37 °C overnight. |
| T158 | 217-479 | Sentence | denotes | Aliquots of released N-linked glycans were also fluorescently labelled with procainamide, by adding 100 μL of labelling mixture (110 mg/mL procainamide and 60 mg/mL sodium cyanoborohydrate in 70% DMSO and 30% glacial acetic acid) and incubating for 4 h at 65 °C. |
| T159 | 480-575 | Sentence | denotes | Procainamide labelled glycans were purified using Spe-ed Amide 2 columns (Applied Separations). |