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PMC:7253482 / 24455-24780 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
804 86-87 Gene denotes N Gene:43740575
805 309-310 Gene denotes S Gene:43740568
807 18-28 Species denotes SARS-CoV-2 Tax:2697049
808 51-61 Species denotes SARS-CoV-2 Tax:2697049
809 223-240 Species denotes novel coronavirus Tax:2697049
813 207-214 Chemical denotes glycans MESH:D011134
816 33-37 Disease denotes SARS MESH:D045169
817 128-132 Disease denotes SARS MESH:D045169
818 304-308 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T139 0-8 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T79 18-26 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 18-22 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T81 33-37 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 51-59 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 51-55 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 128-132 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 304-308 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T150 72-73 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T151 83-85 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T152 139-141 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T243 0-8 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T244 39-41 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T245 207-214 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T72 102-107 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T73 151-156 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T18965 0-8 NNS denotes proteins
T72137 9-13 IN denotes from
T71306 14-17 DT denotes the
T25653 18-28 NN denotes SARS-CoV-2
T82634 29-32 CC denotes and
T90138 33-37 NN denotes SARS
T79086 38-39 -LRB- denotes (
T21819 39-41 NN denotes SI
T4098 42-48 NN denotes Fig. 6
T37852 48-49 -RRB- denotes )
T34122 51-61 NN denotes SARS-CoV-2
T47078 62-71 VBZ denotes possesses
T64573 72-73 DT denotes a
T60437 74-79 NN denotes total
T28667 80-82 IN denotes of
T12092 83-85 CD denotes 22
T1640 86-94 JJ denotes N-linked
T97157 95-101 NN denotes glycan
T11869 102-107 NNS denotes sites
T81728 108-116 VBN denotes compared
T53746 117-121 IN denotes with
T64999 122-124 CD denotes 23
T3044 125-127 IN denotes on
T27983 128-132 NNP denotes SARS
T70372 132-133 -COMMA- denotes ,
T36523 134-138 IN denotes with
T81512 139-141 CD denotes 18
T55641 142-144 IN denotes of
T31809 145-150 DT denotes these
T30346 151-156 NNS denotes sites
T33229 157-162 VBG denotes being
T95497 163-165 IN denotes in
T81137 166-172 NN denotes common
T99058 174-176 IN denotes As
T67481 177-181 JJ denotes such
T5512 181-182 -COMMA- denotes ,
T56317 183-185 PRP denotes it
T83032 186-188 VBZ denotes is
T6892 189-195 JJ denotes likely
T46550 196-200 IN denotes that
T32694 201-206 DT denotes these
T45067 207-214 NNS denotes glycans
T82922 215-217 IN denotes on
T78450 218-222 DT denotes this
T70467 223-228 JJ denotes novel
T54943 229-240 NN denotes coronavirus
T82041 241-246 MD denotes would
T38496 247-253 VB denotes shield
T40453 254-261 JJ denotes similar
T78152 262-273 JJ denotes immunogenic
T36034 274-282 NNS denotes epitopes
T43430 283-287 WDT denotes that
T42643 288-291 VBP denotes are
T34663 292-300 VBN denotes observed
T28338 301-303 IN denotes on
T42537 304-308 NNP denotes SARS
T28404 309-311 NNP denotes S.
T34718 312-314 IN denotes As
T3102 315-323 VBN denotes expected
T14875 323-324 -COMMA- denotes ,
R47619 T18965 T72137 arg1Of proteins,from
R67544 T25653 T72137 arg2Of SARS-CoV-2,from
R10275 T25653 T71306 arg1Of SARS-CoV-2,the
R92973 T18965 T82634 arg1Of proteins,and
R46838 T90138 T82634 arg2Of SARS,and
R33151 T90138 T79086 arg1Of SARS,(
R76672 T4098 T79086 arg2Of Fig. 6,(
R23030 T37852 T79086 arg3Of ),(
R7891 T4098 T21819 arg1Of Fig. 6,SI
R90066 T34122 T47078 arg1Of SARS-CoV-2,possesses
R2421 T60437 T47078 arg2Of total,possesses
R69986 T60437 T64573 arg1Of total,a
R89049 T60437 T28667 arg1Of total,of
R56835 T11869 T28667 arg2Of sites,of
R66944 T11869 T12092 arg1Of sites,22
R97186 T11869 T1640 arg1Of sites,N-linked
R70039 T11869 T97157 arg1Of sites,glycan
R58702 T47078 T81728 arg1Of possesses,compared
R79993 T53746 T81728 arg2Of with,compared
R73081 T64999 T53746 arg2Of 23,with
R25678 T81728 T3044 arg1Of compared,on
R54442 T27983 T3044 arg2Of SARS,on
R43596 T47078 T70372 arg1Of possesses,","
R85039 T47078 T36523 arg1Of possesses,with
R48982 T81512 T36523 arg2Of 18,with
R44430 T33229 T36523 arg3Of being,with
R73216 T81512 T55641 arg1Of 18,of
R99688 T30346 T55641 arg2Of sites,of
R80985 T30346 T31809 arg1Of sites,these
R33403 T81512 T33229 arg1Of 18,being
R77630 T95497 T33229 arg2Of in,being
R12152 T81512 T95497 arg1Of 18,in
R49729 T81137 T95497 arg2Of common,in
R71487 T83032 T99058 arg1Of is,As
R45768 T67481 T99058 arg2Of such,As
R85204 T83032 T5512 arg1Of is,","
R51225 T6892 T83032 arg2Of likely,is
R54673 T38496 T6892 arg2Of shield,likely
R58371 T38496 T46550 arg1Of shield,that
R42340 T45067 T32694 arg1Of glycans,these
R72305 T45067 T82922 arg1Of glycans,on
R86649 T54943 T82922 arg2Of coronavirus,on
R67963 T54943 T78450 arg1Of coronavirus,this
R72941 T54943 T70467 arg1Of coronavirus,novel
R41744 T45067 T82041 arg1Of glycans,would
R65080 T38496 T82041 arg2Of shield,would
R36276 T45067 T38496 arg1Of glycans,shield
R65730 T36034 T38496 arg2Of epitopes,shield
R11713 T36034 T40453 arg1Of epitopes,similar
R37452 T36034 T78152 arg1Of epitopes,immunogenic
R67493 T36034 T43430 arg1Of epitopes,that
R68310 T36034 T42643 arg1Of epitopes,are
R78256 T34663 T42643 arg2Of observed,are
R11906 T36034 T34663 arg2Of epitopes,observed
R84232 T34718 T34663 arg3Of As,observed
R67918 T34663 T28338 arg1Of observed,on
R26118 T28404 T28338 arg2Of S.,on
R80995 T28404 T42537 arg1Of S.,SARS
R94455 T3102 T34718 arg2Of expected,As

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T138 0-8 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T165 0-8 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T166 207-214 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T169 18-28 Species denotes SARS-CoV-2 NCBItxid:2697049
T170 18-22 Species denotes SARS NCBItxid:694009
T171 33-37 Species denotes SARS NCBItxid:694009
T172 51-61 Species denotes SARS-CoV-2 NCBItxid:2697049
T173 51-55 Species denotes SARS NCBItxid:694009
T174 128-132 Species denotes SARS NCBItxid:694009
T175 304-308 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T138 51-173 Sentence denotes SARS-CoV-2 possesses a total of 22 N-linked glycan sites compared with 23 on SARS, with 18 of these sites being in common.
T139 174-311 Sentence denotes As such, it is likely that these glycans on this novel coronavirus would shield similar immunogenic epitopes that are observed on SARS S.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T74 18-28 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T75 18-22 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 33-37 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T77 51-61 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T78 51-55 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T79 128-132 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T80 304-308 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
807 18-28 Species denotes SARS-CoV-2 Tax:2697049
816 33-37 Disease denotes SARS MESH:D045169
808 51-61 Species denotes SARS-CoV-2 Tax:2697049
804 86-87 Gene denotes N Gene:43740575
817 128-132 Disease denotes SARS MESH:D045169
813 207-214 Chemical denotes glycans MESH:D011134
809 223-240 Species denotes novel coronavirus Tax:2697049
818 304-308 Disease denotes SARS MESH:D045169
805 309-310 Gene denotes S Gene:43740568

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T138 51-173 Sentence denotes SARS-CoV-2 possesses a total of 22 N-linked glycan sites compared with 23 on SARS, with 18 of these sites being in common.
T139 174-311 Sentence denotes As such, it is likely that these glycans on this novel coronavirus would shield similar immunogenic epitopes that are observed on SARS S.