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PMC:7253482 / 24359-25554 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
803 660-665 Gene denotes spike Gene:43740568
804 182-183 Gene denotes N Gene:43740575
805 405-406 Gene denotes S Gene:43740568
806 1023-1028 Gene denotes spike Gene:43740568
807 114-124 Species denotes SARS-CoV-2 Tax:2697049
808 147-157 Species denotes SARS-CoV-2 Tax:2697049
809 319-336 Species denotes novel coronavirus Tax:2697049
810 885-895 Species denotes SARS-CoV-2 Tax:2697049
811 1012-1022 Species denotes SARS-CoV-2 Tax:2697049
812 1107-1111 Species denotes ncov Tax:2697049
813 303-310 Chemical denotes glycans MESH:D011134
814 827-833 Chemical denotes glycan MESH:D011134
815 929-935 Chemical denotes glycan MESH:D011134
816 129-133 Disease denotes SARS MESH:D045169
817 224-228 Disease denotes SARS MESH:D045169
818 400-404 Disease denotes SARS MESH:D045169
819 876-880 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T139 96-104 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T79 114-122 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 114-118 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T81 129-133 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 147-155 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 147-151 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 224-228 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 400-404 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 876-880 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T87 885-893 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T88 885-889 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T89 1012-1020 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 1012-1016 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T150 168-169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T151 179-181 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T152 235-237 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T153 461-468 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T154 489-491 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T155 681-683 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T156 857-859 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T157 857-859 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T158 909-911 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T159 1029-1034 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T243 96-104 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T244 135-137 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T245 303-310 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T246 857-859 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T247 966-968 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T248 1184-1186 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T71 85-90 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T72 198-203 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T73 247-252 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T74 461-468 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T75 563-575 http://purl.obolibrary.org/obo/BFO_0000034 denotes functionally
T76 834-839 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T77 936-940 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T78 1177-1182 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T92680 0-4 RBR denotes More
T84481 5-14 RB denotes topically
T70792 14-15 -COMMA- denotes ,
T23248 16-18 PRP denotes it
T53506 19-21 VBZ denotes is
T18888 22-33 JJ denotes interesting
T12601 34-36 TO denotes to
T38716 37-41 VB denotes note
T31921 42-45 DT denotes the
T52475 46-58 NN denotes conservation
T58850 59-61 IN denotes of
T72458 62-70 JJ denotes N-linked
T35369 71-84 NN denotes glycosylation
T60774 85-90 NNS denotes sites
T17084 91-93 IN denotes on
T40757 94-95 NN denotes S
T18965 96-104 NNS denotes proteins
T72137 105-109 IN denotes from
T71306 110-113 DT denotes the
T25653 114-124 NN denotes SARS-CoV-2
T82634 125-128 CC denotes and
T90138 129-133 NN denotes SARS
T79086 134-135 -LRB- denotes (
T21819 135-137 NN denotes SI
T4098 138-144 NN denotes Fig. 6
T37852 144-145 -RRB- denotes )
T34122 147-157 NN denotes SARS-CoV-2
T47078 158-167 VBZ denotes possesses
T64573 168-169 DT denotes a
T60437 170-175 NN denotes total
T28667 176-178 IN denotes of
T12092 179-181 CD denotes 22
T1640 182-190 JJ denotes N-linked
T97157 191-197 NN denotes glycan
T11869 198-203 NNS denotes sites
T81728 204-212 VBN denotes compared
T53746 213-217 IN denotes with
T64999 218-220 CD denotes 23
T3044 221-223 IN denotes on
T27983 224-228 NNP denotes SARS
T70372 228-229 -COMMA- denotes ,
T36523 230-234 IN denotes with
T81512 235-237 CD denotes 18
T55641 238-240 IN denotes of
T31809 241-246 DT denotes these
T30346 247-252 NNS denotes sites
T33229 253-258 VBG denotes being
T95497 259-261 IN denotes in
T81137 262-268 NN denotes common
T99058 270-272 IN denotes As
T67481 273-277 JJ denotes such
T5512 277-278 -COMMA- denotes ,
T56317 279-281 PRP denotes it
T83032 282-284 VBZ denotes is
T6892 285-291 JJ denotes likely
T46550 292-296 IN denotes that
T32694 297-302 DT denotes these
T45067 303-310 NNS denotes glycans
T82922 311-313 IN denotes on
T78450 314-318 DT denotes this
T70467 319-324 JJ denotes novel
T54943 325-336 NN denotes coronavirus
T82041 337-342 MD denotes would
T38496 343-349 VB denotes shield
T40453 350-357 JJ denotes similar
T78152 358-369 JJ denotes immunogenic
T36034 370-378 NNS denotes epitopes
T43430 379-383 WDT denotes that
T42643 384-387 VBP denotes are
T34663 388-396 VBN denotes observed
T28338 397-399 IN denotes on
T42537 400-404 NNP denotes SARS
T28404 405-407 NNP denotes S.
T34718 408-410 IN denotes As
T3102 411-419 VBN denotes expected
T14875 419-420 -COMMA- denotes ,
T72037 421-425 JJS denotes most
T23602 426-428 IN denotes of
T78209 429-432 DT denotes the
T75405 433-444 NNS denotes differences
T7434 445-452 IN denotes between
T54679 453-456 DT denotes the
T36690 457-460 CD denotes two
T10541 461-468 NNS denotes viruses
T22099 469-472 VBP denotes are
T77577 473-481 VBN denotes observed
T80845 482-484 IN denotes on
T35913 485-488 DT denotes the
T42862 489-491 NN denotes S1
T82481 492-499 NN denotes subunit
T63639 499-500 -COMMA- denotes ,
T95917 501-504 JJ denotes due
T19623 505-507 TO denotes to
T39634 508-511 PRP-DOLLAR- denotes its
T91852 512-523 NN denotes amenability
T93743 524-526 TO denotes to
T96851 527-540 NNS denotes substitutions
T53841 541-546 IN denotes while
T23506 547-552 RB denotes still
T19959 553-562 VBG denotes remaining
T60128 563-575 RB denotes functionally
T58264 576-585 JJ denotes competent
T45174 587-598 RB denotes Furthermore
T77108 598-599 -COMMA- denotes ,
T23034 600-606 JJ denotes likely
T28413 607-614 NNS denotes targets
T16688 615-618 IN denotes for
T51805 619-622 DT denotes the
T98975 623-631 NN denotes majority
T23520 632-634 IN denotes of
T89744 635-645 NNS denotes antibodies
T37340 646-655 VBG denotes targeting
T85444 656-659 DT denotes the
T12203 660-665 NN denotes spike
T30887 666-669 VBP denotes are
T9951 670-677 JJ denotes located
T15001 678-680 IN denotes on
T46529 681-683 NN denotes S1
T56103 683-684 -COMMA- denotes ,
T81494 685-694 VBG denotes resulting
T44486 695-697 IN denotes in
T32445 698-705 JJR denotes greater
T72703 706-712 NNS denotes levels
T40990 713-715 IN denotes of
T38229 716-722 JJ denotes immune
T43357 723-731 NN denotes pressure
T59397 732-736 IN denotes upon
T26191 737-741 DT denotes this
T33036 742-749 NN denotes subunit
T97000 751-755 DT denotes This
T64538 756-762 NN denotes notion
T59288 763-765 VBZ denotes is
T47385 766-773 RBR denotes further
T35201 774-783 VBN denotes reflected
T72056 784-786 IN denotes in
T18104 787-792 NNS denotes terms
T34570 793-795 IN denotes of
T18734 796-809 NN denotes glycosylation
T57766 809-810 -COMMA- denotes ,
T66534 811-815 IN denotes with
T36486 816-819 DT denotes all
T71292 820-822 IN denotes of
T8985 823-826 DT denotes the
T61275 827-833 NN denotes glycan
T2410 834-839 NNS denotes sites
T35106 840-849 VBN denotes conserved
T58672 850-852 IN denotes on
T57713 853-856 DT denotes the
T22974 857-859 NN denotes S2
T26472 860-867 NN denotes subunit
T18939 868-875 IN denotes between
T72173 876-880 NN denotes SARS
T72299 881-884 CC denotes and
T10006 885-895 NN denotes SARS-CoV-2
T58557 895-896 -COMMA- denotes ,
T83864 897-904 IN denotes whereas
T99079 905-908 DT denotes the
T3040 909-911 NN denotes S1
T2354 912-919 NN denotes subunit
T23968 920-928 VBZ denotes exhibits
T71933 929-935 NN denotes glycan
T60903 936-940 NN denotes site
T37762 941-950 NNS denotes additions
T91373 951-954 CC denotes and
T25121 955-964 NNS denotes deletions
T22092 965-966 -LRB- denotes (
T71875 966-968 NN denotes SI
T23058 969-975 NN denotes Fig. 7
T18793 975-976 -RRB- denotes )
T76427 978-991 JJ denotes Bioinformatic
T77800 992-1000 NN denotes analysis
T78537 1001-1003 IN denotes of
T86297 1004-1011 JJ denotes current
T80371 1012-1022 NN denotes SARS-CoV-2
T13595 1023-1028 NN denotes spike
T39941 1029-1034 NNS denotes genes
T50763 1035-1036 -LRB- denotes (
T65176 1036-1043 NN denotes n = 566
T2438 1044-1046 IN denotes as
T93347 1047-1049 IN denotes of
T69209 1050-1052 CD denotes 17
T15871 1053-1058 NNP denotes March
T73572 1059-1063 CD denotes 2020
T57682 1063-1064 -RRB- denotes )
T37387 1065-1069 IN denotes from
T97769 1070-1082 NN denotes nextstrain61
T59510 1083-1084 -LRB- denotes (
T27017 1084-1089 NNS denotes https
T63488 1089-1090 -COLON- denotes :
T93568 1090-1111 LS denotes //nextstrain.org/ncov
T43920 1111-1112 -RRB- denotes )
T64664 1113-1121 VBD denotes revealed
T48510 1122-1125 JJ denotes low
T63332 1126-1134 NN denotes sequence
T32624 1135-1144 NN denotes diversity
T57322 1145-1148 CC denotes and
T27673 1149-1151 DT denotes no
T84080 1152-1159 NNS denotes changes
T83739 1160-1162 IN denotes in
T16571 1163-1176 NN denotes glycosylation
T12246 1177-1182 NNS denotes sites
T58601 1183-1184 -LRB- denotes (
T48372 1184-1186 NN denotes SI
T90304 1187-1193 NN denotes Fig. 8
T71179 1193-1194 -RRB- denotes )
R32959 T84481 T92680 arg1Of topically,More
R26617 T53506 T84481 arg1Of is,topically
R50205 T53506 T70792 arg1Of is,","
R48890 T38716 T23248 arg1Of note,it
R55954 T38716 T53506 arg1Of note,is
R58669 T18888 T53506 arg2Of interesting,is
R6112 T38716 T18888 arg1Of note,interesting
R53389 T38716 T12601 arg1Of note,to
R5462 T52475 T38716 arg2Of conservation,note
R22881 T52475 T31921 arg1Of conservation,the
R47592 T52475 T58850 arg1Of conservation,of
R71132 T60774 T58850 arg2Of sites,of
R17257 T60774 T72458 arg1Of sites,N-linked
R68611 T60774 T35369 arg1Of sites,glycosylation
R14083 T52475 T17084 arg1Of conservation,on
R79721 T82634 T17084 arg2Of and,on
R50563 T18965 T40757 arg1Of proteins,S
R47619 T18965 T72137 arg1Of proteins,from
R67544 T25653 T72137 arg2Of SARS-CoV-2,from
R10275 T25653 T71306 arg1Of SARS-CoV-2,the
R92973 T18965 T82634 arg1Of proteins,and
R46838 T90138 T82634 arg2Of SARS,and
R33151 T90138 T79086 arg1Of SARS,(
R76672 T4098 T79086 arg2Of Fig. 6,(
R23030 T37852 T79086 arg3Of ),(
R7891 T4098 T21819 arg1Of Fig. 6,SI
R90066 T34122 T47078 arg1Of SARS-CoV-2,possesses
R2421 T60437 T47078 arg2Of total,possesses
R69986 T60437 T64573 arg1Of total,a
R89049 T60437 T28667 arg1Of total,of
R56835 T11869 T28667 arg2Of sites,of
R66944 T11869 T12092 arg1Of sites,22
R97186 T11869 T1640 arg1Of sites,N-linked
R70039 T11869 T97157 arg1Of sites,glycan
R58702 T47078 T81728 arg1Of possesses,compared
R79993 T53746 T81728 arg2Of with,compared
R73081 T64999 T53746 arg2Of 23,with
R25678 T81728 T3044 arg1Of compared,on
R54442 T27983 T3044 arg2Of SARS,on
R43596 T47078 T70372 arg1Of possesses,","
R85039 T47078 T36523 arg1Of possesses,with
R48982 T81512 T36523 arg2Of 18,with
R44430 T33229 T36523 arg3Of being,with
R73216 T81512 T55641 arg1Of 18,of
R99688 T30346 T55641 arg2Of sites,of
R80985 T30346 T31809 arg1Of sites,these
R33403 T81512 T33229 arg1Of 18,being
R77630 T95497 T33229 arg2Of in,being
R12152 T81512 T95497 arg1Of 18,in
R49729 T81137 T95497 arg2Of common,in
R71487 T83032 T99058 arg1Of is,As
R45768 T67481 T99058 arg2Of such,As
R85204 T83032 T5512 arg1Of is,","
R75933 T77577 T56317 arg1Of observed,it
R73807 T77577 T83032 arg1Of observed,is
R51225 T6892 T83032 arg2Of likely,is
R68437 T77577 T6892 arg1Of observed,likely
R54673 T38496 T6892 arg2Of shield,likely
R58371 T38496 T46550 arg1Of shield,that
R42340 T45067 T32694 arg1Of glycans,these
R72305 T45067 T82922 arg1Of glycans,on
R86649 T54943 T82922 arg2Of coronavirus,on
R67963 T54943 T78450 arg1Of coronavirus,this
R72941 T54943 T70467 arg1Of coronavirus,novel
R41744 T45067 T82041 arg1Of glycans,would
R65080 T38496 T82041 arg2Of shield,would
R36276 T45067 T38496 arg1Of glycans,shield
R65730 T36034 T38496 arg2Of epitopes,shield
R11713 T36034 T40453 arg1Of epitopes,similar
R37452 T36034 T78152 arg1Of epitopes,immunogenic
R67493 T36034 T43430 arg1Of epitopes,that
R68310 T36034 T42643 arg1Of epitopes,are
R78256 T34663 T42643 arg2Of observed,are
R11906 T36034 T34663 arg2Of epitopes,observed
R84232 T34718 T34663 arg3Of As,observed
R67918 T34663 T28338 arg1Of observed,on
R26118 T28404 T28338 arg2Of S.,on
R80995 T28404 T42537 arg1Of S.,SARS
R94455 T3102 T34718 arg2Of expected,As
R39068 T77577 T14875 arg1Of observed,","
R45850 T72037 T23602 arg1Of most,of
R5435 T75405 T23602 arg2Of differences,of
R94366 T75405 T78209 arg1Of differences,the
R56486 T75405 T7434 arg1Of differences,between
R16162 T10541 T7434 arg2Of viruses,between
R44507 T10541 T54679 arg1Of viruses,the
R40393 T10541 T36690 arg1Of viruses,two
R61550 T72037 T22099 arg1Of most,are
R35116 T77577 T22099 arg2Of observed,are
R98825 T72037 T77577 arg2Of most,observed
R76150 T77577 T80845 arg1Of observed,on
R6949 T82481 T80845 arg2Of subunit,on
R99455 T82481 T35913 arg1Of subunit,the
R18633 T82481 T42862 arg1Of subunit,S1
R20757 T82481 T63639 arg1Of subunit,","
R54237 T19623 T95917 arg1Of to,due
R51307 T82481 T19623 arg1Of subunit,to
R21418 T91852 T19623 arg2Of amenability,to
R21904 T91852 T39634 arg1Of amenability,its
R59746 T82481 T93743 arg1Of subunit,to
R47345 T96851 T93743 arg2Of substitutions,to
R35841 T77577 T53841 arg1Of observed,while
R85556 T19959 T53841 arg2Of remaining,while
R10673 T19959 T23506 arg1Of remaining,still
R34726 T72037 T19959 arg1Of most,remaining
R19325 T58264 T19959 arg2Of competent,remaining
R19617 T58264 T60128 arg1Of competent,functionally
R58787 T72037 T58264 arg1Of most,competent
R77739 T30887 T45174 arg1Of are,Furthermore
R67273 T30887 T77108 arg1Of are,","
R46535 T28413 T23034 arg1Of targets,likely
R43856 T28413 T16688 arg1Of targets,for
R82865 T98975 T16688 arg2Of majority,for
R39589 T98975 T51805 arg1Of majority,the
R9817 T98975 T23520 arg1Of majority,of
R40704 T89744 T23520 arg2Of antibodies,of
R18386 T89744 T37340 arg1Of antibodies,targeting
R85836 T12203 T37340 arg2Of spike,targeting
R7210 T12203 T85444 arg1Of spike,the
R40971 T28413 T30887 arg1Of targets,are
R9818 T9951 T30887 arg2Of located,are
R9457 T28413 T9951 arg1Of targets,located
R18750 T9951 T15001 arg1Of located,on
R57987 T46529 T15001 arg2Of S1,on
R42761 T30887 T56103 arg1Of are,","
R49041 T30887 T81494 modOf are,resulting
R61431 T81494 T44486 arg1Of resulting,in
R39760 T72703 T44486 arg2Of levels,in
R6232 T72703 T32445 arg1Of levels,greater
R19514 T72703 T40990 arg1Of levels,of
R2329 T43357 T40990 arg2Of pressure,of
R67326 T43357 T38229 arg1Of pressure,immune
R62810 T43357 T59397 arg1Of pressure,upon
R55130 T33036 T59397 arg2Of subunit,upon
R47997 T33036 T26191 arg1Of subunit,this
R47138 T64538 T97000 arg1Of notion,This
R6662 T64538 T59288 arg1Of notion,is
R98954 T35201 T59288 arg2Of reflected,is
R33406 T35201 T47385 arg1Of reflected,further
R86035 T64538 T35201 arg2Of notion,reflected
R77417 T35201 T72056 arg1Of reflected,in
R26332 T18104 T72056 arg2Of terms,in
R98154 T18104 T34570 arg1Of terms,of
R54851 T18734 T34570 arg2Of glycosylation,of
R34585 T35201 T57766 arg1Of reflected,","
R52595 T35201 T66534 arg1Of reflected,with
R29976 T36486 T66534 arg2Of all,with
R79398 T36486 T71292 arg1Of all,of
R48396 T2410 T71292 arg2Of sites,of
R88808 T2410 T8985 arg1Of sites,the
R50718 T2410 T61275 arg1Of sites,glycan
R57707 T2410 T35106 arg2Of sites,conserved
R5701 T35106 T58672 arg1Of conserved,on
R96360 T26472 T58672 arg2Of subunit,on
R7938 T26472 T57713 arg1Of subunit,the
R33985 T26472 T22974 arg1Of subunit,S2
R17775 T26472 T18939 arg1Of subunit,between
R45968 T72299 T18939 arg2Of and,between
R57589 T72173 T72299 arg1Of SARS,and
R57832 T10006 T72299 arg2Of SARS-CoV-2,and
R85642 T83864 T58557 arg1Of whereas,","
R8157 T35201 T83864 arg1Of reflected,whereas
R72732 T23968 T83864 arg2Of exhibits,whereas
R77938 T2354 T99079 arg1Of subunit,the
R78301 T2354 T3040 arg1Of subunit,S1
R11819 T2354 T23968 arg1Of subunit,exhibits
R23723 T91373 T23968 arg2Of and,exhibits
R59857 T37762 T71933 arg1Of additions,glycan
R90671 T37762 T60903 arg1Of additions,site
R73831 T37762 T91373 arg1Of additions,and
R41822 T25121 T91373 arg2Of deletions,and
R85655 T25121 T22092 arg1Of deletions,(
R78333 T23058 T22092 arg2Of Fig. 7,(
R97294 T18793 T22092 arg3Of ),(
R45699 T23058 T71875 arg1Of Fig. 7,SI
R67211 T77800 T76427 arg1Of analysis,Bioinformatic
R38316 T77800 T78537 arg1Of analysis,of
R8557 T39941 T78537 arg2Of genes,of
R52342 T39941 T86297 arg1Of genes,current
R7381 T39941 T80371 arg1Of genes,SARS-CoV-2
R15555 T39941 T13595 arg1Of genes,spike
R65600 T39941 T50763 arg1Of genes,(
R92527 T65176 T50763 arg2Of n = 566,(
R54671 T57682 T50763 arg3Of ),(
R70606 T93347 T2438 arg1Of of,as
R73294 T65176 T93347 arg1Of n = 566,of
R87124 T15871 T93347 arg2Of March,of
R86027 T15871 T69209 arg1Of March,17
R4883 T15871 T73572 arg1Of March,2020
R95164 T77800 T37387 arg1Of analysis,from
R38078 T97769 T37387 arg2Of nextstrain61,from
R62502 T97769 T59510 arg1Of nextstrain61,(
R6412 T27017 T59510 arg2Of https,(
R2333 T63488 T59510 arg3Of :,(
R37616 T64664 T93568 arg1Of revealed,//nextstrain.org/ncov
R2734 T93568 T43920 arg1Of //nextstrain.org/ncov,)
R82991 T77800 T64664 arg1Of analysis,revealed
R86434 T57322 T64664 arg2Of and,revealed
R48827 T32624 T48510 arg1Of diversity,low
R73901 T32624 T63332 arg1Of diversity,sequence
R16270 T32624 T57322 arg1Of diversity,and
R87294 T84080 T57322 arg2Of changes,and
R42509 T84080 T27673 arg1Of changes,no
R99568 T84080 T83739 arg1Of changes,in
R43772 T12246 T83739 arg2Of sites,in
R83070 T12246 T16571 arg1Of sites,glycosylation
R95102 T12246 T58601 arg1Of sites,(
R85973 T90304 T58601 arg2Of Fig. 8,(
R72328 T71179 T58601 arg3Of ),(
R43660 T90304 T48372 arg1Of Fig. 8,SI

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T138 96-104 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T165 96-104 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T166 303-310 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T169 114-124 Species denotes SARS-CoV-2 NCBItxid:2697049
T170 114-118 Species denotes SARS NCBItxid:694009
T171 129-133 Species denotes SARS NCBItxid:694009
T172 147-157 Species denotes SARS-CoV-2 NCBItxid:2697049
T173 147-151 Species denotes SARS NCBItxid:694009
T174 224-228 Species denotes SARS NCBItxid:694009
T175 400-404 Species denotes SARS NCBItxid:694009
T176 461-468 Species denotes viruses NCBItxid:10239
T177 876-880 Species denotes SARS NCBItxid:694009
T178 885-895 Species denotes SARS-CoV-2 NCBItxid:2697049
T179 885-889 Species denotes SARS NCBItxid:694009
T180 1012-1022 Species denotes SARS-CoV-2 NCBItxid:2697049
T181 1012-1016 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T137 0-146 Sentence denotes More topically, it is interesting to note the conservation of N-linked glycosylation sites on S proteins from the SARS-CoV-2 and SARS (SI Fig. 6).
T138 147-269 Sentence denotes SARS-CoV-2 possesses a total of 22 N-linked glycan sites compared with 23 on SARS, with 18 of these sites being in common.
T139 270-407 Sentence denotes As such, it is likely that these glycans on this novel coronavirus would shield similar immunogenic epitopes that are observed on SARS S.
T140 408-586 Sentence denotes As expected, most of the differences between the two viruses are observed on the S1 subunit, due to its amenability to substitutions while still remaining functionally competent.
T141 587-750 Sentence denotes Furthermore, likely targets for the majority of antibodies targeting the spike are located on S1, resulting in greater levels of immune pressure upon this subunit.
T142 751-977 Sentence denotes This notion is further reflected in terms of glycosylation, with all of the glycan sites conserved on the S2 subunit between SARS and SARS-CoV-2, whereas the S1 subunit exhibits glycan site additions and deletions (SI Fig. 7).
T143 978-1195 Sentence denotes Bioinformatic analysis of current SARS-CoV-2 spike genes (n = 566 as of 17 March 2020) from nextstrain61 (https://nextstrain.org/ncov) revealed low sequence diversity and no changes in glycosylation sites (SI Fig. 8).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T74 114-124 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T75 114-118 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 129-133 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T77 147-157 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T78 147-151 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T79 224-228 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T80 400-404 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T81 876-880 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 885-895 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T83 885-889 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 1012-1022 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T85 1012-1016 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
807 114-124 Species denotes SARS-CoV-2 Tax:2697049
816 129-133 Disease denotes SARS MESH:D045169
808 147-157 Species denotes SARS-CoV-2 Tax:2697049
804 182-183 Gene denotes N Gene:43740575
817 224-228 Disease denotes SARS MESH:D045169
813 303-310 Chemical denotes glycans MESH:D011134
809 319-336 Species denotes novel coronavirus Tax:2697049
818 400-404 Disease denotes SARS MESH:D045169
805 405-406 Gene denotes S Gene:43740568
803 660-665 Gene denotes spike Gene:43740568
814 827-833 Chemical denotes glycan MESH:D011134
819 876-880 Disease denotes SARS MESH:D045169
810 885-895 Species denotes SARS-CoV-2 Tax:2697049
815 929-935 Chemical denotes glycan MESH:D011134
811 1012-1022 Species denotes SARS-CoV-2 Tax:2697049
806 1023-1028 Gene denotes spike Gene:43740568
812 1107-1111 Species denotes ncov Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T5011 94-104 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T51 71-84 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T52 796-809 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T53 1163-1176 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T46 71-84 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T47 796-809 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T48 1163-1176 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T50 62-84 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T51 71-84 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T52 796-809 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T53 1163-1176 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T137 0-146 Sentence denotes More topically, it is interesting to note the conservation of N-linked glycosylation sites on S proteins from the SARS-CoV-2 and SARS (SI Fig. 6).
T138 147-269 Sentence denotes SARS-CoV-2 possesses a total of 22 N-linked glycan sites compared with 23 on SARS, with 18 of these sites being in common.
T139 270-407 Sentence denotes As such, it is likely that these glycans on this novel coronavirus would shield similar immunogenic epitopes that are observed on SARS S.
T140 408-586 Sentence denotes As expected, most of the differences between the two viruses are observed on the S1 subunit, due to its amenability to substitutions while still remaining functionally competent.
T141 587-750 Sentence denotes Furthermore, likely targets for the majority of antibodies targeting the spike are located on S1, resulting in greater levels of immune pressure upon this subunit.
T142 751-977 Sentence denotes This notion is further reflected in terms of glycosylation, with all of the glycan sites conserved on the S2 subunit between SARS and SARS-CoV-2, whereas the S1 subunit exhibits glycan site additions and deletions (SI Fig. 7).
T143 978-1195 Sentence denotes Bioinformatic analysis of current SARS-CoV-2 spike genes (n = 566 as of 17 March 2020) from nextstrain61 (https://nextstrain.org/ncov) revealed low sequence diversity and no changes in glycosylation sites (SI Fig. 8).