PMC:7253482 / 21363-22945
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 715 | 623-629 | Chemical | denotes | glycan | MESH:D011134 |
| 731 | 845-848 | Gene | denotes | GPC | Gene:2995 |
| 732 | 856-859 | Gene | denotes | Env | Gene:64006 |
| 733 | 919-922 | Gene | denotes | Env | Gene:64006 |
| 734 | 1493-1496 | Gene | denotes | GPC | Gene:2995 |
| 735 | 850-855 | Species | denotes | HIV-1 | Tax:11676 |
| 736 | 879-883 | Species | denotes | H3N2 | Tax:119210 |
| 737 | 869-878 | Species | denotes | Influenza | Tax:11320 |
| 738 | 672-678 | Chemical | denotes | Glycan | MESH:D011134 |
| 739 | 1001-1013 | Chemical | denotes | Oligomannose | |
| 740 | 1109-1125 | Chemical | denotes | N-linked glycans | |
| 741 | 1164-1176 | Chemical | denotes | procainamide | MESH:D011342 |
| 742 | 1249-1265 | Chemical | denotes | N-linked glycans | |
| 743 | 1378-1384 | Chemical | denotes | glycan | MESH:D011134 |
| 744 | 824-828 | Disease | denotes | MERS | MESH:D018352 |
| 745 | 1463-1470 | CellLine | denotes | HEK293F | CVCL:6642 |
| 752 | 25-31 | Chemical | denotes | glycan | MESH:D011134 |
| 753 | 201-208 | Chemical | denotes | glycans | MESH:D011134 |
| 754 | 322-334 | Chemical | denotes | oligomannose | |
| 755 | 474-480 | Chemical | denotes | glycan | MESH:D011134 |
| 756 | 502-514 | Chemical | denotes | oligomannose | |
| 757 | 562-568 | Chemical | denotes | glycan | MESH:D011134 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T122 | 79-87 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T123 | 170-181 | Body_part | denotes | amino-acids | http://purl.org/sig/ont/fma/fma82739 |
| T124 | 245-255 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T125 | 284-296 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T126 | 662-670 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T127 | 718-726 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
| T128 | 850-853 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T129 | 1034-1047 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T130 | 1212-1222 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T131 | 1314-1324 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T132 | 1341-1353 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T133 | 1411-1424 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T134 | 1471-1476 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T135 | 1566-1572 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T136 | 1576-1581 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 1566-1572 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T74 | 816-820 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T75 | 869-878 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T76 | 915-918 | Disease | denotes | SIV | http://purl.obolibrary.org/obo/MONDO_0010029 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T121 | 94-95 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T122 | 245-264 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino-acid residues |
| T123 | 245-264 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino-acid residues |
| T124 | 346-347 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T125 | 393-400 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T126 | 1150-1158 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelled |
| T127 | 1212-1231 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino-acid residues |
| T128 | 1212-1231 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino-acid residues |
| T129 | 1314-1333 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino-acid residues |
| T130 | 1314-1333 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino-acid residues |
| T131 | 1357-1358 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T132 | 1471-1476 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T133 | 1521-1526 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T134 | 1566-1572 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T135 | 1566-1572 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T136 | 1566-1572 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T137 | 1576-1581 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T215 | 79-87 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T216 | 170-175 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T217 | 176-181 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T218 | 201-208 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T219 | 226-233 | Chemical | denotes | solvent | http://purl.obolibrary.org/obo/CHEBI_46787 |
| T220 | 245-264 | Chemical | denotes | amino-acid residues | http://purl.obolibrary.org/obo/CHEBI_33708 |
| T221 | 245-250 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T222 | 251-255 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T223 | 284-296 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T224 | 662-670 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T225 | 672-678 | Chemical | denotes | Glycan | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T226 | 928-930 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T227 | 1034-1047 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T228 | 1118-1125 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T229 | 1186-1188 | Chemical | denotes | SI | http://purl.obolibrary.org/obo/CHEBI_90326 |
| T230 | 1212-1231 | Chemical | denotes | amino-acid residues | http://purl.obolibrary.org/obo/CHEBI_33708 |
| T231 | 1212-1217 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T232 | 1218-1222 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T233 | 1258-1265 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T234 | 1295-1302 | Chemical | denotes | solvent | http://purl.obolibrary.org/obo/CHEBI_46787 |
| T235 | 1314-1333 | Chemical | denotes | amino-acid residues | http://purl.obolibrary.org/obo/CHEBI_33708 |
| T236 | 1314-1319 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T237 | 1320-1324 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T238 | 1341-1353 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T239 | 1411-1424 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T240 | 1573-1575 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
LitCovid-sample-MedDRA
| Id | Subject | Object | Predicate | Lexical cue | meddra_id |
|---|---|---|---|---|---|
| T8 | 8-20 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | investigated | http://purl.bioontology.org/ontology/MEDDRA/10062026 |
LitCovid-sample-PD-IDO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T56 | 393-400 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T57 | 1471-1476 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T58 | 1521-1526 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T59 | 1576-1581 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
LitCovid-sample-Enju
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T77334 | 0-2 | PRP | denotes | We |
| T62822 | 3-7 | RB | denotes | then |
| T3264 | 8-20 | VBD | denotes | investigated |
| T90908 | 21-24 | DT | denotes | the |
| T93386 | 25-31 | NN | denotes | glycan |
| T20732 | 32-38 | NN | denotes | shield |
| T38777 | 39-48 | NNS | denotes | densities |
| T13008 | 49-51 | IN | denotes | of |
| T66872 | 52-57 | CD | denotes | seven |
| T69255 | 58-63 | JJ | denotes | viral |
| T47768 | 64-69 | NN | denotes | class |
| T56776 | 70-71 | CD | denotes | I |
| T4483 | 72-78 | NN | denotes | fusion |
| T51449 | 79-87 | NNS | denotes | proteins |
| T68472 | 88-93 | VBG | denotes | using |
| T54019 | 94-95 | DT | denotes | a |
| T34571 | 96-102 | JJ | denotes | global |
| T29179 | 103-113 | JJ | denotes | structural |
| T72666 | 114-122 | NN | denotes | approach |
| T29830 | 123-128 | WDT | denotes | which |
| T75361 | 129-132 | VBD | denotes | was |
| T60433 | 133-143 | VBN | denotes | calculated |
| T21150 | 144-146 | IN | denotes | by |
| T65408 | 147-155 | VBG | denotes | dividing |
| T12510 | 156-159 | DT | denotes | the |
| T47420 | 160-166 | NN | denotes | number |
| T7804 | 167-169 | IN | denotes | of |
| T96477 | 170-181 | NNS | denotes | amino-acids |
| T57287 | 182-186 | WDT | denotes | that |
| T31963 | 187-195 | VBP | denotes | interact |
| T11453 | 196-200 | IN | denotes | with |
| T5466 | 201-208 | NNS | denotes | glycans |
| T67617 | 209-211 | IN | denotes | by |
| T76751 | 212-215 | DT | denotes | the |
| T95787 | 216-222 | NN | denotes | number |
| T84433 | 223-225 | IN | denotes | of |
| T75342 | 226-244 | JJ | denotes | solvent-accessible |
| T8633 | 245-255 | JJ | denotes | amino-acid |
| T96165 | 256-264 | NNS | denotes | residues |
| T61859 | 265-267 | IN | denotes | of |
| T96398 | 268-272 | DT | denotes | each |
| T53031 | 273-283 | JJ | denotes | respective |
| T13646 | 284-296 | NN | denotes | glycoprotein |
| T34895 | 297-300 | CC | denotes | and |
| T21412 | 301-308 | VBD | denotes | plotted |
| T93327 | 309-313 | DT | denotes | this |
| T37324 | 314-321 | IN | denotes | against |
| T83132 | 322-334 | NN | denotes | oligomannose |
| T17751 | 335-344 | NN | denotes | abundance |
| T73372 | 346-347 | DT | denotes | A |
| T11561 | 348-354 | JJ | denotes | strong |
| T31010 | 355-366 | NN | denotes | correlation |
| T21278 | 367-370 | VBD | denotes | was |
| T95071 | 371-379 | VBN | denotes | observed |
| T30414 | 380-381 | -LRB- | denotes | ( |
| T84041 | 381-387 | NN | denotes | Fig. 6 |
| T23375 | 387-388 | -RRB- | denotes | ) |
| T37933 | 389-392 | CC | denotes | and |
| T54604 | 393-400 | NNS | denotes | viruses |
| T83021 | 401-413 | RB | denotes | historically |
| T67339 | 414-424 | VBN | denotes | classified |
| T1758 | 425-427 | IN | denotes | as |
| T50624 | 428-436 | NN | denotes | “evasion |
| T41175 | 437-446 | NN | denotes | strong”56 |
| T26594 | 447-450 | VBD | denotes | had |
| T17878 | 451-464 | RB | denotes | significantly |
| T59830 | 465-473 | JJ | denotes | elevated |
| T67014 | 474-480 | NN | denotes | glycan |
| T83252 | 481-487 | NN | denotes | shield |
| T44453 | 488-497 | NNS | denotes | densities |
| T12305 | 498-501 | CC | denotes | and |
| T84841 | 502-514 | NN | denotes | oligomannose |
| T65772 | 515-524 | NN | denotes | abundance |
| T36713 | 524-525 | -COMMA- | denotes | , |
| T36054 | 526-531 | WDT | denotes | which |
| T54589 | 532-543 | VBZ | denotes | underscores |
| T77386 | 544-547 | DT | denotes | the |
| T8708 | 548-558 | NN | denotes | importance |
| T99300 | 559-561 | IN | denotes | of |
| T3158 | 562-568 | NN | denotes | glycan |
| T44352 | 569-578 | NN | denotes | shielding |
| T8441 | 579-581 | IN | denotes | in |
| T91196 | 582-588 | JJ | denotes | immune |
| T54044 | 589-596 | NN | denotes | evasion |
| T60202 | 598-602 | NNP | denotes | Fig. |
| T35932 | 603-604 | CD | denotes | 6 |
| T52424 | 605-615 | NN | denotes | Comparison |
| T33530 | 616-618 | IN | denotes | of |
| T64406 | 619-622 | DT | denotes | the |
| T54237 | 623-629 | NN | denotes | glycan |
| T17551 | 630-637 | NNS | denotes | shields |
| T16798 | 638-640 | IN | denotes | of |
| T41253 | 641-646 | JJ | denotes | viral |
| T25202 | 647-652 | NN | denotes | class |
| T14464 | 653-654 | CD | denotes | I |
| T85420 | 655-661 | NN | denotes | fusion |
| T28685 | 662-670 | NNS | denotes | proteins |
| T57548 | 672-678 | NN | denotes | Glycan |
| T11420 | 679-685 | NN | denotes | shield |
| T30294 | 686-695 | NNS | denotes | densities |
| T78773 | 696-700 | VBD | denotes | were |
| T51996 | 701-711 | VBN | denotes | calculated |
| T60493 | 712-717 | VBG | denotes | using |
| T24146 | 718-726 | NNPS | denotes | Proteins |
| T7451 | 726-727 | -COMMA- | denotes | , |
| T11968 | 728-738 | NNP | denotes | Interfaces |
| T93687 | 738-739 | -COMMA- | denotes | , |
| T97859 | 740-750 | NNPS | denotes | Structures |
| T31999 | 751-754 | CC | denotes | and |
| T70602 | 755-765 | NNPS | denotes | Assemblies |
| T67118 | 766-767 | -LRB- | denotes | ( |
| T86788 | 767-771 | NN | denotes | PISA |
| T23666 | 771-772 | -RRB- | denotes | ) |
| T93480 | 772-774 | CD | denotes | 83 |
| T54925 | 775-783 | NNS | denotes | analyses |
| T13544 | 784-786 | IN | denotes | of |
| T10473 | 787-792 | RB | denotes | fully |
| T95681 | 793-805 | VBN | denotes | glycosylated |
| T46270 | 806-812 | NNS | denotes | models |
| T25318 | 813-815 | IN | denotes | of |
| T63214 | 816-820 | NNP | denotes | SARS |
| T36278 | 821-822 | NNP | denotes | S |
| T38160 | 822-823 | -COMMA- | denotes | , |
| T32901 | 824-828 | NNP | denotes | MERS |
| T50082 | 829-830 | NNP | denotes | S |
| T20315 | 830-831 | -COMMA- | denotes | , |
| T26336 | 832-836 | NNP | denotes | HKU1 |
| T80637 | 837-838 | NNP | denotes | S |
| T28124 | 838-839 | -COMMA- | denotes | , |
| T48490 | 840-844 | NN | denotes | LASV |
| T53169 | 845-848 | NN | denotes | GPC |
| T70489 | 848-849 | -COMMA- | denotes | , |
| T36851 | 850-855 | NN | denotes | HIV-1 |
| T61005 | 856-859 | NN | denotes | Env |
| T62312 | 860-861 | -LRB- | denotes | ( |
| T36158 | 861-866 | NN | denotes | BG505 |
| T19207 | 866-867 | -RRB- | denotes | ) |
| T1909 | 867-868 | -COMMA- | denotes | , |
| T16967 | 869-878 | NN | denotes | Influenza |
| T17288 | 879-883 | NN | denotes | H3N2 |
| T64807 | 884-897 | NN | denotes | hemagglutinin |
| T69427 | 898-899 | -LRB- | denotes | ( |
| T33012 | 899-907 | NNP | denotes | Victoria |
| T31397 | 908-912 | CD | denotes | 2011 |
| T95304 | 912-913 | -RRB- | denotes | ) |
| T61501 | 913-914 | -COMMA- | denotes | , |
| T78843 | 915-918 | NN | denotes | SIV |
| T53051 | 919-922 | NNP | denotes | Env |
| T95730 | 923-924 | -LRB- | denotes | ( |
| T35725 | 924-927 | NN | denotes | PDB |
| T46991 | 928-930 | NN | denotes | ID |
| T12133 | 931-935 | NN | denotes | 5X58 |
| T34645 | 935-936 | -COMMA- | denotes | , |
| T32072 | 937-941 | NN | denotes | 5X59 |
| T39600 | 941-942 | -COMMA- | denotes | , |
| T65590 | 943-947 | NN | denotes | 5I08 |
| T19879 | 947-948 | -COMMA- | denotes | , |
| T61708 | 949-953 | NN | denotes | 5VK2 |
| T80173 | 953-954 | -COMMA- | denotes | , |
| T86385 | 955-959 | NN | denotes | 4ZMJ |
| T31925 | 959-960 | -COMMA- | denotes | , |
| T78881 | 961-965 | NN | denotes | 4O5N |
| T64135 | 965-966 | -COMMA- | denotes | , |
| T30171 | 967-971 | NN | denotes | 6OHY |
| T91114 | 971-972 | -COMMA- | denotes | , |
| T4958 | 973-985 | RB | denotes | respectively |
| T39966 | 985-986 | -RRB- | denotes | ) |
| T89368 | 986-999 | CD | denotes | 9,11,53,84–86 |
| T57630 | 1001-1013 | NN | denotes | Oligomannose |
| T21025 | 1014-1024 | NNS | denotes | abundances |
| T24463 | 1025-1027 | IN | denotes | of |
| T96910 | 1028-1033 | JJ | denotes | viral |
| T1932 | 1034-1047 | NNS | denotes | glycoproteins |
| T11498 | 1048-1052 | VBD | denotes | were |
| T36644 | 1053-1064 | VBN | denotes | ascertained |
| T73246 | 1065-1067 | IN | denotes | by |
| T1782 | 1068-1078 | NN | denotes | HILIC-UPLC |
| T3180 | 1079-1087 | NN | denotes | analysis |
| T62295 | 1088-1090 | IN | denotes | of |
| T78639 | 1091-1097 | NN | denotes | PNGase |
| T58794 | 1098-1099 | NN | denotes | F |
| T67409 | 1100-1108 | VBN | denotes | released |
| T15765 | 1109-1117 | JJ | denotes | N-linked |
| T33026 | 1118-1125 | NNS | denotes | glycans |
| T60951 | 1126-1130 | WDT | denotes | that |
| T45752 | 1131-1135 | VBD | denotes | were |
| T96739 | 1136-1149 | RB | denotes | fluorescently |
| T44762 | 1150-1158 | VBN | denotes | labelled |
| T97123 | 1159-1163 | IN | denotes | with |
| T94571 | 1164-1184 | NN | denotes | procainamide24,45,53 |
| T49839 | 1185-1186 | -LRB- | denotes | ( |
| T5501 | 1186-1188 | NN | denotes | SI |
| T78348 | 1189-1195 | NN | denotes | Fig. 5 |
| T93024 | 1195-1196 | -RRB- | denotes | ) |
| T81346 | 1198-1201 | DT | denotes | The |
| T66936 | 1202-1208 | NN | denotes | number |
| T36773 | 1209-1211 | IN | denotes | of |
| T76460 | 1212-1222 | JJ | denotes | amino-acid |
| T27945 | 1223-1231 | NNS | denotes | residues |
| T75621 | 1232-1243 | VBG | denotes | interacting |
| T84066 | 1244-1248 | IN | denotes | with |
| T20906 | 1249-1257 | JJ | denotes | N-linked |
| T54866 | 1258-1265 | NNS | denotes | glycans |
| T73735 | 1266-1269 | VBD | denotes | was |
| T12725 | 1270-1277 | VBN | denotes | divided |
| T71326 | 1278-1280 | IN | denotes | by |
| T33187 | 1281-1284 | DT | denotes | the |
| T90192 | 1285-1291 | NN | denotes | number |
| T62752 | 1292-1294 | IN | denotes | of |
| T61364 | 1295-1313 | JJ | denotes | solvent-accessible |
| T68346 | 1314-1324 | JJ | denotes | amino-acid |
| T61476 | 1325-1333 | NNS | denotes | residues |
| T43495 | 1334-1336 | IN | denotes | of |
| T46241 | 1337-1340 | DT | denotes | the |
| T24762 | 1341-1353 | NN | denotes | glycoprotein |
| T53426 | 1354-1356 | IN | denotes | as |
| T85566 | 1357-1358 | DT | denotes | a |
| T28528 | 1359-1366 | NN | denotes | measure |
| T60922 | 1367-1370 | IN | denotes | for |
| T57613 | 1371-1377 | JJ | denotes | global |
| T92947 | 1378-1384 | NN | denotes | glycan |
| T81164 | 1385-1391 | NN | denotes | shield |
| T10370 | 1392-1399 | NN | denotes | density |
| T61338 | 1401-1404 | DT | denotes | All |
| T48920 | 1405-1410 | JJ | denotes | viral |
| T68543 | 1411-1424 | NNS | denotes | glycoproteins |
| T82274 | 1425-1433 | VBN | denotes | analysed |
| T26853 | 1434-1438 | VBD | denotes | were |
| T71248 | 1439-1448 | VBN | denotes | expressed |
| T33142 | 1449-1451 | IN | denotes | as |
| T69877 | 1452-1459 | NNS | denotes | trimers |
| T70780 | 1460-1462 | IN | denotes | in |
| T61720 | 1463-1470 | NN | denotes | HEK293F |
| T11163 | 1471-1476 | NNS | denotes | cells |
| T6955 | 1477-1482 | RB | denotes | apart |
| T40144 | 1483-1487 | IN | denotes | from |
| T86025 | 1488-1492 | NN | denotes | LASV |
| T38606 | 1493-1496 | NN | denotes | GPC |
| T52914 | 1496-1497 | -COMMA- | denotes | , |
| T35666 | 1498-1503 | WDT | denotes | which |
| T47548 | 1504-1507 | VBD | denotes | was |
| T56105 | 1508-1515 | VBN | denotes | derived |
| T54764 | 1516-1520 | IN | denotes | from |
| T18669 | 1521-1531 | JJ | denotes | virus-like |
| T49812 | 1532-1541 | NNS | denotes | particles |
| T85286 | 1542-1546 | IN | denotes | from |
| T2491 | 1547-1558 | JJ | denotes | Madin-Darby |
| T81144 | 1559-1565 | JJ | denotes | canine |
| T79381 | 1566-1572 | NN | denotes | kidney |
| T4581 | 1573-1575 | CD | denotes | II |
| T55061 | 1576-1581 | NNS | denotes | cells |
| R87623 | T3264 | T62822 | arg1Of | investigated,then |
| R83516 | T77334 | T3264 | arg1Of | We,investigated |
| R3140 | T38777 | T3264 | arg2Of | densities,investigated |
| R89054 | T38777 | T90908 | arg1Of | densities,the |
| R23058 | T38777 | T93386 | arg1Of | densities,glycan |
| R65182 | T38777 | T20732 | arg1Of | densities,shield |
| R98997 | T38777 | T13008 | arg1Of | densities,of |
| R75510 | T51449 | T13008 | arg2Of | proteins,of |
| R58533 | T51449 | T66872 | arg1Of | proteins,seven |
| R86146 | T51449 | T69255 | arg1Of | proteins,viral |
| R2569 | T51449 | T47768 | arg1Of | proteins,class |
| R73887 | T51449 | T56776 | arg1Of | proteins,I |
| R13781 | T51449 | T4483 | arg1Of | proteins,fusion |
| R14572 | T77334 | T68472 | arg1Of | We,using |
| R77919 | T72666 | T68472 | arg2Of | approach,using |
| R24334 | T3264 | T68472 | modOf | investigated,using |
| R82423 | T72666 | T54019 | arg1Of | approach,a |
| R97505 | T72666 | T34571 | arg1Of | approach,global |
| R78741 | T72666 | T29179 | arg1Of | approach,structural |
| R43446 | T72666 | T29830 | arg1Of | approach,which |
| R35456 | T72666 | T75361 | arg1Of | approach,was |
| R81263 | T60433 | T75361 | arg2Of | calculated,was |
| R31579 | T72666 | T60433 | arg2Of | approach,calculated |
| R13123 | T60433 | T21150 | arg1Of | calculated,by |
| R28323 | T65408 | T21150 | arg2Of | dividing,by |
| R20111 | T47420 | T65408 | arg2Of | number,dividing |
| R9175 | T47420 | T12510 | arg1Of | number,the |
| R95827 | T47420 | T7804 | arg1Of | number,of |
| R15347 | T96477 | T7804 | arg2Of | amino-acids,of |
| R51134 | T96477 | T57287 | arg1Of | amino-acids,that |
| R42830 | T96477 | T31963 | arg1Of | amino-acids,interact |
| R85024 | T31963 | T11453 | arg1Of | interact,with |
| R75968 | T5466 | T11453 | arg2Of | glycans,with |
| R16719 | T47420 | T67617 | arg1Of | number,by |
| R77888 | T95787 | T67617 | arg2Of | number,by |
| R94385 | T95787 | T76751 | arg1Of | number,the |
| R81614 | T95787 | T84433 | arg1Of | number,of |
| R75973 | T96165 | T84433 | arg2Of | residues,of |
| R62166 | T96165 | T75342 | arg1Of | residues,solvent-accessible |
| R54228 | T96165 | T8633 | arg1Of | residues,amino-acid |
| R10009 | T96165 | T61859 | arg1Of | residues,of |
| R77752 | T13646 | T61859 | arg2Of | glycoprotein,of |
| R94627 | T13646 | T96398 | arg1Of | glycoprotein,each |
| R99353 | T13646 | T53031 | arg1Of | glycoprotein,respective |
| R72278 | T60433 | T34895 | arg1Of | calculated,and |
| R43254 | T21412 | T34895 | arg2Of | plotted,and |
| R80635 | T72666 | T21412 | arg1Of | approach,plotted |
| R99324 | T93327 | T21412 | arg2Of | this,plotted |
| R38610 | T21412 | T37324 | arg1Of | plotted,against |
| R23783 | T17751 | T37324 | arg2Of | abundance,against |
| R32496 | T17751 | T83132 | arg1Of | abundance,oligomannose |
| R66356 | T31010 | T73372 | arg1Of | correlation,A |
| R13565 | T31010 | T11561 | arg1Of | correlation,strong |
| R44474 | T31010 | T21278 | arg1Of | correlation,was |
| R29921 | T95071 | T21278 | arg2Of | observed,was |
| R90591 | T31010 | T95071 | arg2Of | correlation,observed |
| R42948 | T37933 | T95071 | arg3Of | and,observed |
| R61784 | T84041 | T30414 | arg2Of | Fig. 6,( |
| R32032 | T23375 | T30414 | arg3Of | ),( |
| R38335 | T84041 | T37933 | arg1Of | Fig. 6,and |
| R13727 | T54604 | T37933 | arg2Of | viruses,and |
| R4989 | T67339 | T83021 | arg1Of | classified,historically |
| R20313 | T54604 | T67339 | arg2Of | viruses,classified |
| R12013 | T67339 | T1758 | arg1Of | classified,as |
| R71549 | T26594 | T1758 | arg2Of | had,as |
| R91526 | T41175 | T50624 | arg1Of | strong”56,“evasion |
| R2740 | T41175 | T26594 | arg1Of | strong”56,had |
| R32632 | T12305 | T26594 | arg2Of | and,had |
| R75872 | T59830 | T17878 | arg1Of | elevated,significantly |
| R21139 | T12305 | T59830 | arg1Of | and,elevated |
| R21565 | T44453 | T67014 | arg1Of | densities,glycan |
| R29839 | T44453 | T83252 | arg1Of | densities,shield |
| R10069 | T44453 | T12305 | arg1Of | densities,and |
| R27313 | T65772 | T12305 | arg2Of | abundance,and |
| R9103 | T65772 | T84841 | arg1Of | abundance,oligomannose |
| R57902 | T37933 | T36713 | arg1Of | and,"," |
| R90565 | T37933 | T36054 | arg1Of | and,which |
| R94511 | T37933 | T54589 | arg1Of | and,underscores |
| R69204 | T8708 | T54589 | arg2Of | importance,underscores |
| R98159 | T8708 | T77386 | arg1Of | importance,the |
| R79407 | T8708 | T99300 | arg1Of | importance,of |
| R14360 | T44352 | T99300 | arg2Of | shielding,of |
| R34991 | T44352 | T3158 | arg1Of | shielding,glycan |
| R57681 | T8708 | T8441 | arg1Of | importance,in |
| R13730 | T54044 | T8441 | arg2Of | evasion,in |
| R62925 | T54044 | T91196 | arg1Of | evasion,immune |
| R76184 | T52424 | T60202 | arg1Of | Comparison,Fig. |
| R82223 | T60202 | T35932 | arg1Of | Fig.,6 |
| R65192 | T52424 | T33530 | arg1Of | Comparison,of |
| R2936 | T17551 | T33530 | arg2Of | shields,of |
| R40383 | T17551 | T64406 | arg1Of | shields,the |
| R14742 | T17551 | T54237 | arg1Of | shields,glycan |
| R32039 | T17551 | T16798 | arg1Of | shields,of |
| R39868 | T28685 | T16798 | arg2Of | proteins,of |
| R21190 | T28685 | T41253 | arg1Of | proteins,viral |
| R2149 | T28685 | T25202 | arg1Of | proteins,class |
| R57572 | T28685 | T14464 | arg1Of | proteins,I |
| R86331 | T28685 | T85420 | arg1Of | proteins,fusion |
| R38765 | T30294 | T57548 | arg1Of | densities,Glycan |
| R85433 | T30294 | T11420 | arg1Of | densities,shield |
| R27948 | T30294 | T78773 | arg1Of | densities,were |
| R67688 | T51996 | T78773 | arg2Of | calculated,were |
| R14706 | T30294 | T51996 | arg2Of | densities,calculated |
| R3845 | T31999 | T60493 | arg2Of | and,using |
| R35026 | T51996 | T60493 | modOf | calculated,using |
| R91304 | T24146 | T7451 | arg1Of | Proteins,"," |
| R83407 | T11968 | T7451 | arg2Of | Interfaces,"," |
| R33652 | T7451 | T93687 | arg1Of | ",","," |
| R12788 | T97859 | T93687 | arg2Of | Structures,"," |
| R85434 | T93687 | T31999 | arg1Of | ",",and |
| R49539 | T70602 | T31999 | arg2Of | Assemblies,and |
| R85216 | T70602 | T67118 | arg1Of | Assemblies,( |
| R11568 | T86788 | T67118 | arg2Of | PISA,( |
| R19405 | T23666 | T67118 | arg3Of | ),( |
| R16896 | T54925 | T93480 | arg1Of | analyses,83 |
| R80879 | T60493 | T54925 | arg1Of | using,analyses |
| R82869 | T54925 | T13544 | arg1Of | analyses,of |
| R5899 | T46270 | T13544 | arg2Of | models,of |
| R99358 | T95681 | T10473 | arg1Of | glycosylated,fully |
| R79187 | T46270 | T95681 | arg1Of | models,glycosylated |
| R39812 | T54925 | T25318 | arg1Of | analyses,of |
| R18076 | T61501 | T25318 | arg2Of | ",",of |
| R28422 | T36278 | T63214 | arg1Of | S,SARS |
| R66179 | T36278 | T38160 | arg1Of | S,"," |
| R12204 | T50082 | T38160 | arg2Of | S,"," |
| R51926 | T50082 | T32901 | arg1Of | S,MERS |
| R14580 | T38160 | T20315 | arg1Of | ",","," |
| R20363 | T80637 | T20315 | arg2Of | S,"," |
| R26558 | T80637 | T26336 | arg1Of | S,HKU1 |
| R82101 | T20315 | T28124 | arg1Of | ",","," |
| R47204 | T53169 | T28124 | arg2Of | GPC,"," |
| R58325 | T53169 | T48490 | arg1Of | GPC,LASV |
| R81574 | T28124 | T70489 | arg1Of | ",","," |
| R8502 | T61005 | T70489 | arg2Of | Env,"," |
| R47832 | T61005 | T36851 | arg1Of | Env,HIV-1 |
| R29627 | T61005 | T62312 | arg1Of | Env,( |
| R2207 | T36158 | T62312 | arg2Of | BG505,( |
| R7577 | T19207 | T62312 | arg3Of | ),( |
| R93882 | T70489 | T1909 | arg1Of | ",","," |
| R32451 | T64807 | T1909 | arg2Of | hemagglutinin,"," |
| R57066 | T64807 | T16967 | arg1Of | hemagglutinin,Influenza |
| R4041 | T64807 | T17288 | arg1Of | hemagglutinin,H3N2 |
| R45798 | T64807 | T69427 | arg1Of | hemagglutinin,( |
| R88973 | T33012 | T69427 | arg2Of | Victoria,( |
| R2862 | T95304 | T69427 | arg3Of | ),( |
| R59358 | T33012 | T31397 | arg1Of | Victoria,2011 |
| R58230 | T1909 | T61501 | arg1Of | ",","," |
| R9199 | T53051 | T61501 | arg2Of | Env,"," |
| R2347 | T53051 | T78843 | arg1Of | Env,SIV |
| R25157 | T53051 | T95730 | arg1Of | Env,( |
| R53928 | T31925 | T95730 | arg2Of | ",",( |
| R72329 | T39966 | T95730 | arg3Of | ),( |
| R29324 | T12133 | T35725 | arg1Of | 5X58,PDB |
| R41690 | T12133 | T46991 | arg1Of | 5X58,ID |
| R24287 | T12133 | T34645 | arg1Of | 5X58,"," |
| R53821 | T32072 | T34645 | arg2Of | 5X59,"," |
| R94202 | T34645 | T39600 | arg1Of | ",","," |
| R17192 | T65590 | T39600 | arg2Of | 5I08,"," |
| R97807 | T39600 | T19879 | arg1Of | ",","," |
| R41133 | T61708 | T19879 | arg2Of | 5VK2,"," |
| R3511 | T19879 | T80173 | arg1Of | ",","," |
| R59338 | T86385 | T80173 | arg2Of | 4ZMJ,"," |
| R45489 | T80173 | T31925 | arg1Of | ",","," |
| R46093 | T78881 | T31925 | arg2Of | 4O5N,"," |
| R68812 | T78881 | T64135 | arg1Of | 4O5N,"," |
| R14533 | T30171 | T64135 | arg2Of | 6OHY,"," |
| R80062 | T78881 | T91114 | arg1Of | 4O5N,"," |
| R81880 | T31925 | T4958 | arg1Of | ",",respectively |
| R53776 | T53051 | T89368 | arg1Of | Env,"9,11,53,84–86" |
| R44894 | T21025 | T57630 | arg1Of | abundances,Oligomannose |
| R69562 | T21025 | T24463 | arg1Of | abundances,of |
| R21540 | T1932 | T24463 | arg2Of | glycoproteins,of |
| R7514 | T1932 | T96910 | arg1Of | glycoproteins,viral |
| R97236 | T21025 | T11498 | arg1Of | abundances,were |
| R58316 | T36644 | T11498 | arg2Of | ascertained,were |
| R27056 | T3180 | T36644 | arg1Of | analysis,ascertained |
| R93473 | T21025 | T36644 | arg2Of | abundances,ascertained |
| R3285 | T3180 | T73246 | arg2Of | analysis,by |
| R40920 | T3180 | T1782 | arg1Of | analysis,HILIC-UPLC |
| R88002 | T3180 | T62295 | arg1Of | analysis,of |
| R72750 | T33026 | T62295 | arg2Of | glycans,of |
| R74985 | T33026 | T78639 | arg1Of | glycans,PNGase |
| R7333 | T67409 | T58794 | arg1Of | released,F |
| R64284 | T33026 | T67409 | arg1Of | glycans,released |
| R80415 | T33026 | T15765 | arg1Of | glycans,N-linked |
| R34277 | T33026 | T60951 | arg1Of | glycans,that |
| R27911 | T33026 | T45752 | arg1Of | glycans,were |
| R77821 | T44762 | T45752 | arg2Of | labelled,were |
| R54892 | T44762 | T96739 | arg1Of | labelled,fluorescently |
| R30172 | T33026 | T44762 | arg2Of | glycans,labelled |
| R18949 | T44762 | T97123 | arg1Of | labelled,with |
| R9235 | T94571 | T97123 | arg2Of | "procainamide24,45,53",with |
| R62239 | T94571 | T49839 | arg1Of | "procainamide24,45,53",( |
| R33373 | T78348 | T49839 | arg2Of | Fig. 5,( |
| R60976 | T93024 | T49839 | arg3Of | ),( |
| R51450 | T78348 | T5501 | arg1Of | Fig. 5,SI |
| R59667 | T66936 | T81346 | arg1Of | number,The |
| R75548 | T66936 | T36773 | arg1Of | number,of |
| R81139 | T27945 | T36773 | arg2Of | residues,of |
| R19805 | T27945 | T76460 | arg1Of | residues,amino-acid |
| R30496 | T27945 | T75621 | arg1Of | residues,interacting |
| R7026 | T75621 | T84066 | arg1Of | interacting,with |
| R7338 | T54866 | T84066 | arg2Of | glycans,with |
| R22859 | T54866 | T20906 | arg1Of | glycans,N-linked |
| R88830 | T66936 | T73735 | arg1Of | number,was |
| R66372 | T12725 | T73735 | arg2Of | divided,was |
| R6303 | T90192 | T12725 | arg1Of | number,divided |
| R22147 | T66936 | T12725 | arg2Of | number,divided |
| R68459 | T90192 | T71326 | arg2Of | number,by |
| R4952 | T90192 | T33187 | arg1Of | number,the |
| R65614 | T90192 | T62752 | arg1Of | number,of |
| R76144 | T61476 | T62752 | arg2Of | residues,of |
| R23798 | T61476 | T61364 | arg1Of | residues,solvent-accessible |
| R16680 | T61476 | T68346 | arg1Of | residues,amino-acid |
| R67847 | T61476 | T43495 | arg1Of | residues,of |
| R27919 | T24762 | T43495 | arg2Of | glycoprotein,of |
| R63314 | T24762 | T46241 | arg1Of | glycoprotein,the |
| R39691 | T12725 | T53426 | arg1Of | divided,as |
| R60420 | T28528 | T53426 | arg2Of | measure,as |
| R62113 | T28528 | T85566 | arg1Of | measure,a |
| R84665 | T28528 | T60922 | arg1Of | measure,for |
| R14478 | T10370 | T60922 | arg2Of | density,for |
| R14520 | T10370 | T57613 | arg1Of | density,global |
| R6605 | T10370 | T92947 | arg1Of | density,glycan |
| R68476 | T10370 | T81164 | arg1Of | density,shield |
| R60211 | T68543 | T61338 | arg1Of | glycoproteins,All |
| R42722 | T68543 | T48920 | arg1Of | glycoproteins,viral |
| R52020 | T68543 | T82274 | arg2Of | glycoproteins,analysed |
| R44667 | T68543 | T26853 | arg1Of | glycoproteins,were |
| R84689 | T71248 | T26853 | arg2Of | expressed,were |
| R23244 | T68543 | T71248 | arg2Of | glycoproteins,expressed |
| R39024 | T71248 | T33142 | arg1Of | expressed,as |
| R14422 | T69877 | T33142 | arg2Of | trimers,as |
| R38169 | T69877 | T70780 | arg1Of | trimers,in |
| R60619 | T11163 | T70780 | arg2Of | cells,in |
| R96798 | T11163 | T61720 | arg1Of | cells,HEK293F |
| R96790 | T11163 | T6955 | arg1Of | cells,apart |
| R44107 | T6955 | T40144 | arg1Of | apart,from |
| R65398 | T38606 | T40144 | arg2Of | GPC,from |
| R51633 | T38606 | T86025 | arg1Of | GPC,LASV |
| R96070 | T38606 | T52914 | arg1Of | GPC,"," |
| R62312 | T38606 | T35666 | arg1Of | GPC,which |
| R23171 | T38606 | T47548 | arg1Of | GPC,was |
| R24376 | T56105 | T47548 | arg2Of | derived,was |
| R72771 | T38606 | T56105 | arg2Of | GPC,derived |
| R67041 | T56105 | T54764 | arg1Of | derived,from |
| R58633 | T49812 | T54764 | arg2Of | particles,from |
| R37988 | T49812 | T18669 | arg1Of | particles,virus-like |
| R87260 | T49812 | T85286 | arg1Of | particles,from |
| R85123 | T55061 | T85286 | arg2Of | cells,from |
| R12683 | T55061 | T2491 | arg1Of | cells,Madin-Darby |
| R51133 | T55061 | T81144 | arg1Of | cells,canine |
| R78518 | T55061 | T79381 | arg1Of | cells,kidney |
| R24262 | T55061 | T4581 | arg1Of | cells,II |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T121 | 79-87 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T122 | 170-181 | Body_part | denotes | amino-acids | http://purl.org/sig/ont/fma/fma82739 |
| T123 | 245-255 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T124 | 284-296 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T125 | 662-670 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T126 | 718-726 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
| T127 | 850-853 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T128 | 1034-1047 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T129 | 1212-1222 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T130 | 1314-1324 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T131 | 1341-1353 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T132 | 1411-1424 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T133 | 1471-1476 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T134 | 1566-1572 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T135 | 1576-1581 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T149 | 79-87 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T150 | 170-175 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T151 | 201-208 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T152 | 245-264 | Chemical | denotes | amino-acid residues | http://purl.obolibrary.org/obo/CHEBI_33708 |
| T153 | 284-296 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T154 | 662-670 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T155 | 672-678 | Chemical | denotes | Glycan | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T156 | 1034-1047 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T157 | 1118-1125 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T158 | 1212-1231 | Chemical | denotes | amino-acid residues | http://purl.obolibrary.org/obo/CHEBI_33708 |
| T159 | 1258-1265 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T160 | 1314-1333 | Chemical | denotes | amino-acid residues | http://purl.obolibrary.org/obo/CHEBI_33708 |
| T161 | 1341-1353 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T162 | 1411-1424 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
LitCovid-sample-PD-NCBITaxon
| Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
|---|---|---|---|---|---|
| T152 | 393-400 | Species | denotes | viruses | NCBItxid:10239 |
| T153 | 816-820 | Species | denotes | SARS | NCBItxid:694009 |
| T154 | 824-828 | Species | denotes | MERS | NCBItxid:1335626 |
| T155 | 840-844 | Species | denotes | LASV | NCBItxid:11620 |
| T156 | 850-855 | Species | denotes | HIV-1 | NCBItxid:11676 |
| T157 | 879-883 | Species | denotes | H3N2 | NCBItxid:119210 |
| T158 | 899-907 | Species | denotes | Victoria | NCBItxid:4420 |
| T159 | 915-918 | Species | denotes | SIV | NCBItxid:11723 |
| T160 | 1488-1492 | Species | denotes | LASV | NCBItxid:11620 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T124 | 0-345 | Sentence | denotes | We then investigated the glycan shield densities of seven viral class I fusion proteins using a global structural approach which was calculated by dividing the number of amino-acids that interact with glycans by the number of solvent-accessible amino-acid residues of each respective glycoprotein and plotted this against oligomannose abundance. |
| T125 | 346-597 | Sentence | denotes | A strong correlation was observed (Fig. 6) and viruses historically classified as “evasion strong”56 had significantly elevated glycan shield densities and oligomannose abundance, which underscores the importance of glycan shielding in immune evasion. |
| T126 | 598-671 | Sentence | denotes | Fig. 6 Comparison of the glycan shields of viral class I fusion proteins. |
| T127 | 672-1000 | Sentence | denotes | Glycan shield densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, respectively)9,11,53,84–86. |
| T128 | 1001-1197 | Sentence | denotes | Oligomannose abundances of viral glycoproteins were ascertained by HILIC-UPLC analysis of PNGase F released N-linked glycans that were fluorescently labelled with procainamide24,45,53 (SI Fig. 5). |
| T129 | 1198-1400 | Sentence | denotes | The number of amino-acid residues interacting with N-linked glycans was divided by the number of solvent-accessible amino-acid residues of the glycoprotein as a measure for global glycan shield density. |
| T130 | 1401-1582 | Sentence | denotes | All viral glycoproteins analysed were expressed as trimers in HEK293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells. |
LitCovid-sample-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 1566-1572 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-sample-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T69 | 816-820 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T70 | 869-878 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T71 | 915-918 | Disease | denotes | SIV | http://purl.obolibrary.org/obo/MONDO_0010029 |
LitCovid-sample-Pubtator
| Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
|---|---|---|---|---|---|
| 752 | 25-31 | Chemical | denotes | glycan | MESH:D011134 |
| 738 | 25-31 | Chemical | denotes | glycan | MESH:D011134 |
| 753 | 201-208 | Chemical | denotes | glycans | MESH:D011134 |
| 754 | 322-334 | Chemical | denotes | oligomannose | |
| 755 | 474-480 | Chemical | denotes | glycan | MESH:D011134 |
| 756 | 502-514 | Chemical | denotes | oligomannose | |
| 757 | 562-568 | Chemical | denotes | glycan | MESH:D011134 |
| 715 | 623-629 | Chemical | denotes | glycan | MESH:D011134 |
| 744 | 824-828 | Disease | denotes | MERS | MESH:D018352 |
| 731 | 845-848 | Gene | denotes | GPC | Gene:2995 |
| 735 | 850-855 | Species | denotes | HIV-1 | Tax:11676 |
| 732 | 856-859 | Gene | denotes | Env | Gene:64006 |
| 737 | 869-878 | Species | denotes | Influenza | Tax:11320 |
| 736 | 879-883 | Species | denotes | H3N2 | Tax:119210 |
| 733 | 919-922 | Gene | denotes | Env | Gene:64006 |
| 739 | 1001-1013 | Chemical | denotes | Oligomannose | |
| 740 | 1109-1125 | Chemical | denotes | N-linked glycans | |
| 741 | 1164-1176 | Chemical | denotes | procainamide | MESH:D011342 |
| 742 | 1249-1265 | Chemical | denotes | N-linked glycans | |
| 743 | 1378-1384 | Chemical | denotes | glycan | MESH:D011134 |
| 745 | 1463-1470 | CellLine | denotes | HEK293F | CVCL:6642 |
| 734 | 1493-1496 | Gene | denotes | GPC | Gene:2995 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T4210 | 284-296 | Protein | denotes | glycoprotein | https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8 |
| T4295 | 845-848 | Protein | denotes | GPC | https://www.uniprot.org/uniprot/P03711 |
| T4296 | 856-859 | Protein | denotes | Env | https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123 |
| T4298 | 884-897 | Protein | denotes | hemagglutinin | https://www.uniprot.org/uniprot/Q9YS46|https://www.uniprot.org/uniprot/Q9WNX2|https://www.uniprot.org/uniprot/Q9WFZ1|https://www.uniprot.org/uniprot/Q9WFX3|https://www.uniprot.org/uniprot/Q9WCE8|https://www.uniprot.org/uniprot/Q9WCE3|https://www.uniprot.org/uniprot/Q9WCE1|https://www.uniprot.org/uniprot/Q9WCD9|https://www.uniprot.org/uniprot/Q9WCD8|https://www.uniprot.org/uniprot/Q9WAK5|https://www.uniprot.org/uniprot/Q9WAK4|https://www.uniprot.org/uniprot/Q9WAA0|https://www.uniprot.org/uniprot/Q9WA90|https://www.uniprot.org/uniprot/Q9Q0U6|https://www.uniprot.org/uniprot/Q9PY85|https://www.uniprot.org/uniprot/Q9JF47|https://www.uniprot.org/uniprot/Q9IFF7|https://www.uniprot.org/uniprot/Q9EA20|https://www.uniprot.org/uniprot/Q9E780|https://www.uniprot.org/uniprot/Q998M5|https://www.uniprot.org/uniprot/Q98637|https://www.uniprot.org/uniprot/Q98636|https://www.uniprot.org/uniprot/Q98635|https://www.uniprot.org/uniprot/Q98167|https://www.uniprot.org/uniprot/Q96802|https://www.uniprot.org/uniprot/Q96642|https://www.uniprot.org/uniprot/Q91MA7|https://www.uniprot.org/uniprot/Q91HI9|https://www.uniprot.org/uniprot/Q910M5|https://www.uniprot.org/uniprot/Q86214|https://www.uniprot.org/uniprot/Q86202|https://www.uniprot.org/uniprot/Q86201|https://www.uniprot.org/uniprot/Q86200|https://www.uniprot.org/uniprot/Q86179|https://www.uniprot.org/uniprot/Q86178|https://www.uniprot.org/uniprot/Q86177|https://www.uniprot.org/uniprot/Q86176|https://www.uniprot.org/uniprot/Q86170|https://www.uniprot.org/uniprot/Q85668|https://www.uniprot.org/uniprot/Q85663|https://www.uniprot.org/uniprot/Q84107|https://www.uniprot.org/uniprot/Q84026|https://www.uniprot.org/uniprot/Q84025|https://www.uniprot.org/uniprot/Q84024|https://www.uniprot.org/uniprot/Q84023|https://www.uniprot.org/uniprot/Q84022|https://www.uniprot.org/uniprot/Q84021|https://www.uniprot.org/uniprot/Q84020|https://www.uniprot.org/uniprot/Q84019|https://www.uniprot.org/uniprot/Q84018|https://www.uniprot.org/uniprot/Q84017|https://www.uniprot.org/uniprot/Q84016|https://www.uniprot.org/uniprot/Q84015|https://www.uniprot.org/uniprot/Q84014|https://www.uniprot.org/uniprot/Q84013|https://www.uniprot.org/uniprot/Q84012|https://www.uniprot.org/uniprot/Q84011|https://www.uniprot.org/uniprot/Q84010|https://www.uniprot.org/uniprot/Q84009|https://www.uniprot.org/uniprot/Q84007|https://www.uniprot.org/uniprot/Q84006|https://www.uniprot.org/uniprot/Q84005|https://www.uniprot.org/uniprot/Q84004|https://www.uniprot.org/uniprot/Q84003|https://www.uniprot.org/uniprot/Q84002|https://www.uniprot.org/uniprot/Q84001|https://www.uniprot.org/uniprot/Q84000|https://www.uniprot.org/uniprot/Q83999|https://www.uniprot.org/uniprot/Q83998|https://www.uniprot.org/uniprot/Q83997|https://www.uniprot.org/uniprot/Q83996|https://www.uniprot.org/uniprot/Q83995|https://www.uniprot.org/uniprot/Q83994|https://www.uniprot.org/uniprot/Q83993|https://www.uniprot.org/uniprot/Q83992|https://www.uniprot.org/uniprot/Q83991|https://www.uniprot.org/uniprot/Q83990|https://www.uniprot.org/uniprot/Q83988|https://www.uniprot.org/uniprot/Q83987|https://www.uniprot.org/uniprot/Q83964|https://www.uniprot.org/uniprot/Q83962|https://www.uniprot.org/uniprot/Q83961|https://www.uniprot.org/uniprot/Q83445|https://www.uniprot.org/uniprot/Q83440|https://www.uniprot.org/uniprot/Q82559|https://www.uniprot.org/uniprot/Q82509|https://www.uniprot.org/uniprot/Q82040|https://www.uniprot.org/uniprot/Q80P75|https://www.uniprot.org/uniprot/Q80A30|https://www.uniprot.org/uniprot/Q80A28|https://www.uniprot.org/uniprot/Q80A26|https://www.uniprot.org/uniprot/Q80A22|https://www.uniprot.org/uniprot/Q76ZM3|https://www.uniprot.org/uniprot/Q75Z90|https://www.uniprot.org/uniprot/Q70UN5|https://www.uniprot.org/uniprot/Q70UN4|https://www.uniprot.org/uniprot/Q6TXB8|https://www.uniprot.org/uniprot/Q6PLR4|https://www.uniprot.org/uniprot/Q6LEJ4|https://www.uniprot.org/uniprot/Q6J8F6|https://www.uniprot.org/uniprot/Q6J8E7|https://www.uniprot.org/uniprot/Q6DQ22|https://www.uniprot.org/uniprot/Q6DQ21|https://www.uniprot.org/uniprot/Q6DQ20|https://www.uniprot.org/uniprot/Q6DQ19|https://www.uniprot.org/uniprot/Q6DQ18|https://www.uniprot.org/uniprot/Q6DQ15|https://www.uniprot.org/uniprot/Q6DPZ9|https://www.uniprot.org/uniprot/Q6DME6|https://www.uniprot.org/uniprot/Q67381|https://www.uniprot.org/uniprot/Q67380|https://www.uniprot.org/uniprot/Q67379|https://www.uniprot.org/uniprot/Q67378|https://www.uniprot.org/uniprot/Q67377|https://www.uniprot.org/uniprot/Q67376|https://www.uniprot.org/uniprot/Q67375|https://www.uniprot.org/uniprot/Q67374|https://www.uniprot.org/uniprot/Q67373|https://www.uniprot.org/uniprot/Q67372|https://www.uniprot.org/uniprot/Q67371|https://www.uniprot.org/uniprot/Q67370|https://www.uniprot.org/uniprot/Q67369|https://www.uniprot.org/uniprot/Q67333|https://www.uniprot.org/uniprot/Q67282|https://www.uniprot.org/uniprot/Q67143|https://www.uniprot.org/uniprot/Q67132|https://www.uniprot.org/uniprot/Q67117|https://www.uniprot.org/uniprot/Q67110|https://www.uniprot.org/uniprot/Q67108|https://www.uniprot.org/uniprot/Q67098|https://www.uniprot.org/uniprot/Q67097|https://www.uniprot.org/uniprot/Q67095|https://www.uniprot.org/uniprot/Q67087|https://www.uniprot.org/uniprot/Q67023|https://www.uniprot.org/uniprot/Q67022|https://www.uniprot.org/uniprot/Q67018|https://www.uniprot.org/uniprot/Q65525|https://www.uniprot.org/uniprot/Q463X5|https://www.uniprot.org/uniprot/Q45UF8|https://www.uniprot.org/uniprot/Q3ZK58|https://www.uniprot.org/uniprot/Q3YPZ5|https://www.uniprot.org/uniprot/Q3SBE7|https://www.uniprot.org/uniprot/Q38SQ8|https://www.uniprot.org/uniprot/Q30NQ1|https://www.uniprot.org/uniprot/Q2VNF2|https://www.uniprot.org/uniprot/Q2VND2|https://www.uniprot.org/uniprot/Q2VC96|https://www.uniprot.org/uniprot/Q2RFA5|https://www.uniprot.org/uniprot/Q2RCH5|https://www.uniprot.org/uniprot/Q2MH37|https://www.uniprot.org/uniprot/Q2MH36|https://www.uniprot.org/uniprot/Q2MH35|https://www.uniprot.org/uniprot/Q2ICR0|https://www.uniprot.org/uniprot/Q2F4V2|https://www.uniprot.org/uniprot/Q289M7|https://www.uniprot.org/uniprot/Q288Z6|https://www.uniprot.org/uniprot/Q20PM3|https://www.uniprot.org/uniprot/Q20N38|https://www.uniprot.org/uniprot/Q1WP09|https://www.uniprot.org/uniprot/Q1PUD9|https://www.uniprot.org/uniprot/Q1K9E1|https://www.uniprot.org/uniprot/Q1G0M2|https://www.uniprot.org/uniprot/Q1G0M1|https://www.uniprot.org/uniprot/Q1G0M0|https://www.uniprot.org/uniprot/Q1G0L9|https://www.uniprot.org/uniprot/Q1G0L8|https://www.uniprot.org/uniprot/Q1G0L7|https://www.uniprot.org/uniprot/Q194S8|https://www.uniprot.org/uniprot/Q0PDM6|https://www.uniprot.org/uniprot/Q0PCG7|https://www.uniprot.org/uniprot/Q0HD60|https://www.uniprot.org/uniprot/Q0A465|https://www.uniprot.org/uniprot/Q0A459|https://www.uniprot.org/uniprot/Q0A448|https://www.uniprot.org/uniprot/Q0A437|https://www.uniprot.org/uniprot/Q0A416|https://www.uniprot.org/uniprot/Q0A3Y1|https://www.uniprot.org/uniprot/Q0A3T9|https://www.uniprot.org/uniprot/Q0A2I7|https://www.uniprot.org/uniprot/Q0A2H6|https://www.uniprot.org/uniprot/Q0A2G5|https://www.uniprot.org/uniprot/Q09113|https://www.uniprot.org/uniprot/Q08IH2|https://www.uniprot.org/uniprot/P26101|https://www.uniprot.org/uniprot/P26100|https://www.uniprot.org/uniprot/P26099|https://www.uniprot.org/uniprot/P26098|https://www.uniprot.org/uniprot/P26097|https://www.uniprot.org/uniprot/P26096|https://www.uniprot.org/uniprot/P26095|https://www.uniprot.org/uniprot/P26094|https://www.uniprot.org/uniprot/P25174|https://www.uniprot.org/uniprot/P25173|https://www.uniprot.org/uniprot/P23045|https://www.uniprot.org/uniprot/P22092|https://www.uniprot.org/uniprot/P21284|https://www.uniprot.org/uniprot/P20978|https://www.uniprot.org/uniprot/P19702|https://www.uniprot.org/uniprot/P19701|https://www.uniprot.org/uniprot/P19700|https://www.uniprot.org/uniprot/P19699|https://www.uniprot.org/uniprot/P19698|https://www.uniprot.org/uniprot/P19697|https://www.uniprot.org/uniprot/P19696|https://www.uniprot.org/uniprot/P19695|https://www.uniprot.org/uniprot/P19694|https://www.uniprot.org/uniprot/P19106|https://www.uniprot.org/uniprot/P18880|https://www.uniprot.org/uniprot/P18879|https://www.uniprot.org/uniprot/P18878|https://www.uniprot.org/uniprot/P18877|https://www.uniprot.org/uniprot/P18876|https://www.uniprot.org/uniprot/P18875|https://www.uniprot.org/uniprot/P17504|https://www.uniprot.org/uniprot/P17465|https://www.uniprot.org/uniprot/P17464|https://www.uniprot.org/uniprot/P17463|https://www.uniprot.org/uniprot/P17002|https://www.uniprot.org/uniprot/P17001|https://www.uniprot.org/uniprot/P17000|https://www.uniprot.org/uniprot/P16999|https://www.uniprot.org/uniprot/P16998|https://www.uniprot.org/uniprot/P16997|https://www.uniprot.org/uniprot/P16996|https://www.uniprot.org/uniprot/P16995|https://www.uniprot.org/uniprot/P16994|https://www.uniprot.org/uniprot/P16561|https://www.uniprot.org/uniprot/P16060|https://www.uniprot.org/uniprot/P15658|https://www.uniprot.org/uniprot/P15155|https://www.uniprot.org/uniprot/P13842|https://www.uniprot.org/uniprot/P13103|https://www.uniprot.org/uniprot/P13102|https://www.uniprot.org/uniprot/P13101|https://www.uniprot.org/uniprot/P12976|https://www.uniprot.org/uniprot/P12590|https://www.uniprot.org/uniprot/P12589|https://www.uniprot.org/uniprot/P12588|https://www.uniprot.org/uniprot/P12587|https://www.uniprot.org/uniprot/P12586|https://www.uniprot.org/uniprot/P12585|https://www.uniprot.org/uniprot/P12584|https://www.uniprot.org/uniprot/P12583|https://www.uniprot.org/uniprot/P12582|https://www.uniprot.org/uniprot/P12581|https://www.uniprot.org/uniprot/P12474|https://www.uniprot.org/uniprot/P12473|https://www.uniprot.org/uniprot/P12443|https://www.uniprot.org/uniprot/P12442|https://www.uniprot.org/uniprot/P12441|https://www.uniprot.org/uniprot/P12440|https://www.uniprot.org/uniprot/P12439|https://www.uniprot.org/uniprot/P11201|https://www.uniprot.org/uniprot/P11200|https://www.uniprot.org/uniprot/P11199|https://www.uniprot.org/uniprot/P11198|https://www.unip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uniprot/Q01218|https://www.uniprot.org/uniprot/Q00716|https://www.uniprot.org/uniprot/P87506|https://www.uniprot.org/uniprot/P68760|https://www.uniprot.org/uniprot/P68759|https://www.uniprot.org/uniprot/P68758|https://www.uniprot.org/uniprot/P68757|https://www.uniprot.org/uniprot/P68756|https://www.uniprot.org/uniprot/P68755|https://www.uniprot.org/uniprot/P43260|https://www.uniprot.org/uniprot/P43259|https://www.uniprot.org/uniprot/P43258|https://www.uniprot.org/uniprot/P43257|https://www.uniprot.org/uniprot/P39034|https://www.uniprot.org/uniprot/P39033|https://www.uniprot.org/uniprot/P36346|https://www.uniprot.org/uniprot/P36308|https://www.uniprot.org/uniprot/P36307|https://www.uniprot.org/uniprot/P36306|https://www.uniprot.org/uniprot/P36305|https://www.uniprot.org/uniprot/P35746|https://www.uniprot.org/uniprot/P33807|https://www.uniprot.org/uniprot/P30214|https://www.uniprot.org/uniprot/P28731|https://www.uniprot.org/uniprot/P28730|https://www.uniprot.org/uniprot/P26562|https://www.uniprot.org/uniprot/P26451|https://www.uniprot.org/uniprot/P26193|https://www.uniprot.org/uniprot/P26142|https://www.uniprot.org/uniprot/P26141|https://www.uniprot.org/uniprot/P26140|https://www.uniprot.org/uniprot/P26139|https://www.uniprot.org/uniprot/P26138|https://www.uniprot.org/uniprot/P26137|https://www.uniprot.org/uniprot/P26136|https://www.uniprot.org/uniprot/P26135|https://www.uniprot.org/uniprot/P26134|https://www.uniprot.org/uniprot/P26103|https://www.uniprot.org/uniprot/P26102|https://www.uniprot.org/uniprot/B3SRU3|https://www.uniprot.org/uniprot/B3SRS7|https://www.uniprot.org/uniprot/B3SRR9|https://www.uniprot.org/uniprot/B3SRR1|https://www.uniprot.org/uniprot/B3SRQ3|https://www.uniprot.org/uniprot/B3EUQ6|https://www.uniprot.org/uniprot/A9Q1L0 |
| T4728 | 919-922 | Protein | denotes | Env | https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123 |
| T4730 | 1034-1047 | Protein | denotes | glycoproteins | https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8 |
| T4815 | 1091-1097 | Protein | denotes | PNGase | https://www.uniprot.org/uniprot/Q9TW67|https://www.uniprot.org/uniprot/Q9NR70|https://www.uniprot.org/uniprot/Q9NBD6|https://www.uniprot.org/uniprot/Q9JI78|https://www.uniprot.org/uniprot/Q9CTK3|https://www.uniprot.org/uniprot/Q9BVR8|https://www.uniprot.org/uniprot/Q96IV0|https://www.uniprot.org/uniprot/Q8K113|https://www.uniprot.org/uniprot/Q6PJD8|https://www.uniprot.org/uniprot/Q5ZJM3|https://www.uniprot.org/uniprot/Q5XI55|https://www.uniprot.org/uniprot/Q5WNE3|https://www.uniprot.org/uniprot/Q59FB1|https://www.uniprot.org/uniprot/Q503I8|https://www.uniprot.org/uniprot/Q4R6F3|https://www.uniprot.org/uniprot/B4DJE9|https://www.uniprot.org/uniprot/A8X5N2 |
| T4832 | 1341-1358 | Protein | denotes | glycoprotein as a | https://www.uniprot.org/uniprot/Q77MR8|https://www.uniprot.org/uniprot/Q6LAR3|https://www.uniprot.org/uniprot/P33500|https://www.uniprot.org/uniprot/P22651|https://www.uniprot.org/uniprot/P22650|https://www.uniprot.org/uniprot/P18535|https://www.uniprot.org/uniprot/P13374|https://www.uniprot.org/uniprot/P10681 |
| T4840 | 1411-1424 | Protein | denotes | glycoproteins | https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8 |
| T4925 | 1493-1496 | Protein | denotes | GPC | https://www.uniprot.org/uniprot/P03711 |
LitCovid-sample-PD-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 1566-1572 | http://purl.obolibrary.org/obo/MAT_0000119 | denotes | kidney |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T42 | 582-596 | http://purl.obolibrary.org/obo/GO_0020012 | denotes | immune evasion |
| T43 | 582-596 | http://purl.obolibrary.org/obo/GO_0051805 | denotes | immune evasion |
| T44 | 1091-1099 | http://purl.obolibrary.org/obo/GO_0000224 | denotes | PNGase F |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T39 | 582-596 | http://purl.obolibrary.org/obo/GO_0042783 | denotes | immune evasion |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T43 | 582-596 | http://purl.obolibrary.org/obo/GO_0042783 | denotes | immune evasion |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T124 | 0-345 | Sentence | denotes | We then investigated the glycan shield densities of seven viral class I fusion proteins using a global structural approach which was calculated by dividing the number of amino-acids that interact with glycans by the number of solvent-accessible amino-acid residues of each respective glycoprotein and plotted this against oligomannose abundance. |
| T125 | 346-597 | Sentence | denotes | A strong correlation was observed (Fig. 6) and viruses historically classified as “evasion strong”56 had significantly elevated glycan shield densities and oligomannose abundance, which underscores the importance of glycan shielding in immune evasion. |
| T126 | 598-671 | Sentence | denotes | Fig. 6 Comparison of the glycan shields of viral class I fusion proteins. |
| T127 | 672-1000 | Sentence | denotes | Glycan shield densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, respectively)9,11,53,84–86. |
| T128 | 1001-1197 | Sentence | denotes | Oligomannose abundances of viral glycoproteins were ascertained by HILIC-UPLC analysis of PNGase F released N-linked glycans that were fluorescently labelled with procainamide24,45,53 (SI Fig. 5). |
| T129 | 1198-1400 | Sentence | denotes | The number of amino-acid residues interacting with N-linked glycans was divided by the number of solvent-accessible amino-acid residues of the glycoprotein as a measure for global glycan shield density. |
| T130 | 1401-1582 | Sentence | denotes | All viral glycoproteins analysed were expressed as trimers in HEK293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells. |
LitCovid-sample-Glycan
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T49 | 1401-1404 | https://glytoucan.org/Structures/Glycans/G05518TD | denotes | All |