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PMC:7253482 / 19065-19383 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
660 63-66 Gene denotes Env Gene:64006
670 57-62 Species denotes HIV-1 Tax:11676
678 39-45 Chemical denotes glycan MESH:D011134
679 94-100 Chemical denotes glycan MESH:D011134
680 101-107 Chemical denotes glycan MESH:D011134
681 140-152 Chemical denotes oligomannose
682 180-187 Chemical denotes glycans MESH:D011134
683 245-251 Chemical denotes glycan MESH:D011134
684 299-305 Chemical denotes glycan MESH:D011134
692 191-195 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T108 57-60 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T70 191-195 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T200 180-187 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T60289 0-2 PRP denotes We
T75223 3-10 VBP denotes observe
T57545 11-14 DT denotes the
T48330 15-21 RB denotes nearly
T87308 22-38 JJ denotes all-encompassing
T1558 39-45 NN denotes glycan
T99824 46-53 NN denotes density
T59798 54-56 IN denotes on
T56235 57-62 NN denotes HIV-1
T14383 63-66 NN denotes Env
T33263 67-70 CC denotes and
T4213 71-79 NN denotes evidence
T91161 80-83 IN denotes for
T79082 84-93 JJ denotes extensive
T66189 94-107 NN denotes glycan–glycan
T48593 108-120 NNS denotes interactions
T42535 120-121 -COMMA- denotes ,
T14663 122-132 RB denotes especially
T44869 133-135 IN denotes in
T77065 136-139 DT denotes the
T90752 140-152 NN denotes oligomannose
T24864 153-158 NN denotes patch
T20998 159-166 NNS denotes regions
T55492 166-167 -COMMA- denotes ,
T69929 168-175 IN denotes whereas
T90575 176-179 DT denotes the
T59031 180-187 NNS denotes glycans
T94235 188-190 IN denotes on
T22232 191-195 NNP denotes SARS
T7541 196-197 NNP denotes S
T66013 198-204 VBP denotes appear
T27090 205-209 RBR denotes more
T7370 210-218 VBN denotes isolated
T67487 219-222 CC denotes and
T50530 223-227 VBP denotes lack
T21892 228-231 DT denotes the
T55852 232-244 JJ denotes wide-ranging
T70160 245-251 NN denotes glycan
T80844 252-260 NNS denotes networks
T83936 261-265 WDT denotes that
T81018 266-269 VBP denotes are
T68036 270-273 DT denotes the
T82951 274-282 NN denotes hallmark
T16903 283-285 IN denotes of
T2902 286-288 DT denotes an
T18742 289-298 JJ denotes effective
T88640 299-305 NN denotes glycan
T57983 306-317 NN denotes shield54,55
R57363 T60289 T75223 arg1Of We,observe
R66074 T99824 T75223 arg2Of density,observe
R81587 T99824 T57545 arg1Of density,the
R35059 T87308 T48330 arg1Of all-encompassing,nearly
R7274 T99824 T87308 arg1Of density,all-encompassing
R88937 T99824 T1558 arg1Of density,glycan
R66924 T99824 T59798 arg1Of density,on
R61464 T33263 T59798 arg2Of and,on
R83562 T14383 T56235 arg1Of Env,HIV-1
R85086 T14383 T33263 arg1Of Env,and
R78120 T4213 T33263 arg2Of evidence,and
R42903 T33263 T91161 arg1Of and,for
R57290 T48593 T91161 arg2Of interactions,for
R88967 T48593 T79082 arg1Of interactions,extensive
R10709 T48593 T66189 arg1Of interactions,glycan–glycan
R45240 T99824 T42535 arg1Of density,","
R16806 T44869 T14663 arg1Of in,especially
R95483 T99824 T44869 arg1Of density,in
R56293 T20998 T44869 arg2Of regions,in
R89068 T20998 T77065 arg1Of regions,the
R85023 T20998 T90752 arg1Of regions,oligomannose
R14595 T20998 T24864 arg1Of regions,patch
R53601 T69929 T55492 arg1Of whereas,","
R41847 T75223 T69929 arg1Of observe,whereas
R72281 T67487 T69929 arg2Of and,whereas
R41117 T59031 T90575 arg1Of glycans,the
R11577 T59031 T94235 arg1Of glycans,on
R76941 T7541 T94235 arg2Of S,on
R61132 T7541 T22232 arg1Of S,SARS
R12423 T59031 T66013 arg1Of glycans,appear
R21940 T7370 T66013 arg2Of isolated,appear
R42488 T7370 T27090 arg1Of isolated,more
R49214 T59031 T7370 arg1Of glycans,isolated
R75703 T66013 T67487 arg1Of appear,and
R14857 T50530 T67487 arg2Of lack,and
R31178 T59031 T50530 arg1Of glycans,lack
R58449 T80844 T50530 arg2Of networks,lack
R18453 T80844 T21892 arg1Of networks,the
R78728 T80844 T55852 arg1Of networks,wide-ranging
R63082 T80844 T70160 arg1Of networks,glycan
R85815 T80844 T83936 arg1Of networks,that
R62340 T80844 T81018 arg1Of networks,are
R32364 T82951 T81018 arg2Of hallmark,are
R56572 T82951 T68036 arg1Of hallmark,the
R69107 T82951 T16903 arg1Of hallmark,of
R36848 T57983 T16903 arg2Of "shield54,55",of
R53995 T57983 T2902 arg1Of "shield54,55",an
R40757 T57983 T18742 arg1Of "shield54,55",effective
R23595 T57983 T88640 arg1Of "shield54,55",glycan

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T107 57-60 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T138 180-187 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T143 57-62 Species denotes HIV-1 NCBItxid:11676
T144 191-195 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T111 0-318 Sentence denotes We observe the nearly all-encompassing glycan density on HIV-1 Env and evidence for extensive glycan–glycan interactions, especially in the oligomannose patch regions, whereas the glycans on SARS S appear more isolated and lack the wide-ranging glycan networks that are the hallmark of an effective glycan shield54,55.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T65 191-195 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
678 39-45 Chemical denotes glycan MESH:D011134
670 57-62 Species denotes HIV-1 Tax:11676
660 63-66 Gene denotes Env Gene:64006
679 94-100 Chemical denotes glycan MESH:D011134
680 101-107 Chemical denotes glycan MESH:D011134
681 140-152 Chemical denotes oligomannose
682 180-187 Chemical denotes glycans MESH:D011134
692 191-195 Disease denotes SARS MESH:D045169
683 245-251 Chemical denotes glycan MESH:D011134
684 299-305 Chemical denotes glycan MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T3962 63-66 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T111 0-318 Sentence denotes We observe the nearly all-encompassing glycan density on HIV-1 Env and evidence for extensive glycan–glycan interactions, especially in the oligomannose patch regions, whereas the glycans on SARS S appear more isolated and lack the wide-ranging glycan networks that are the hallmark of an effective glycan shield54,55.