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PMC:7253482 / 18016-18303 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
665 37-43 Species denotes SARS 2 Tax:2697049
666 148-158 Species denotes chimpanzee Tax:9598
667 159-197 Species denotes simian immunodeficiency virus (SIVcpz) Tax:11723
689 135-139 Disease denotes MERS MESH:D018352
690 237-241 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T104 229-232 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T66 37-41 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T67 166-182 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T68 237-241 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T104 148-158 http://purl.obolibrary.org/obo/NCBITaxon_9598 denotes chimpanzee
T105 183-188 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T196 101-103 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T50 166-182 http://purl.obolibrary.org/obo/IDO_0000617 denotes immunodeficiency
T51 183-188 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T52 266-273 http://purl.obolibrary.org/obo/BFO_0000019 denotes quality

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T19388 0-5 NN denotes al.51
T9777 6-11 IN denotes while
T55752 12-15 DT denotes the
T50993 16-26 RB denotes previously
T21233 27-36 VBN denotes published
T39264 37-41 NN denotes SARS
T63581 42-44 NN denotes 2P
T16458 45-54 NN denotes dataset52
T19972 55-58 VBD denotes was
T72393 59-70 VBN denotes reprocessed
T49131 71-74 IN denotes for
T60843 75-79 DT denotes this
T69625 80-85 NN denotes study
T12832 87-95 IN denotes Although
T24787 96-103 NN denotes cryo-EM
T29672 104-112 NNS denotes datasets
T9596 113-115 IN denotes of
T45576 116-121 RB denotes fully
T37894 122-134 VBN denotes glycosylated
T35124 135-139 NNS denotes MERS
T87593 140-143 NN denotes S41
T79382 144-147 CC denotes and
T63281 148-158 NN denotes chimpanzee
T35247 159-165 JJ denotes simian
T82138 166-182 NN denotes immunodeficiency
T35287 183-188 NN denotes virus
T14224 189-190 -LRB- denotes (
T81517 190-196 NN denotes SIVcpz
T3442 196-197 -RRB- denotes )
T14676 197-199 CD denotes 53
T32530 200-203 VBP denotes are
T45598 204-208 RB denotes also
T95444 209-218 JJ denotes available
T17171 218-219 -COMMA- denotes ,
T88916 220-224 RB denotes only
T2700 225-228 DT denotes the
T19064 229-232 NN denotes HIV
T16401 233-236 CC denotes and
T74879 237-241 NN denotes SARS
T37597 242-246 NNS denotes data
T46398 247-251 VBD denotes were
T10901 252-254 IN denotes of
T19935 255-265 JJ denotes sufficient
T58744 266-273 NN denotes quality
T47642 274-275 -LRB- denotes (
T27616 275-281 CD denotes Fig. 5
T15042 281-282 -RRB- denotes )
T64790 284-286 PRP denotes We
R26115 T72393 T9777 arg2Of reprocessed,while
R91746 T16458 T55752 arg1Of dataset52,the
R23575 T21233 T50993 arg1Of published,previously
R10375 T16458 T21233 arg1Of dataset52,published
R14263 T16458 T39264 arg1Of dataset52,SARS
R30163 T16458 T63581 arg1Of dataset52,2P
R49923 T16458 T19972 arg1Of dataset52,was
R47678 T72393 T19972 arg2Of reprocessed,was
R52503 T16458 T72393 arg2Of dataset52,reprocessed
R1686 T72393 T49131 arg1Of reprocessed,for
R55974 T69625 T49131 arg2Of study,for
R6998 T69625 T60843 arg1Of study,this
R67744 T46398 T12832 arg1Of were,Although
R43629 T32530 T12832 arg2Of are,Although
R1401 T29672 T24787 arg1Of datasets,cryo-EM
R89552 T29672 T9596 arg1Of datasets,of
R67665 T14676 T9596 arg2Of 53,of
R80940 T37894 T45576 arg1Of glycosylated,fully
R76365 T35124 T37894 arg1Of MERS,glycosylated
R75905 T35287 T35124 arg1Of virus,MERS
R59119 T35287 T87593 arg1Of virus,S41
R60460 T87593 T79382 arg1Of S41,and
R21732 T63281 T79382 arg2Of chimpanzee,and
R19327 T35287 T63281 arg1Of virus,chimpanzee
R8406 T35287 T35247 arg1Of virus,simian
R69725 T35287 T82138 arg1Of virus,immunodeficiency
R55541 T14676 T35287 arg1Of 53,virus
R62464 T35287 T14224 arg1Of virus,(
R13007 T81517 T14224 arg2Of SIVcpz,(
R57966 T3442 T14224 arg3Of ),(
R58028 T29672 T32530 arg1Of datasets,are
R4932 T95444 T32530 arg2Of available,are
R86107 T32530 T45598 arg1Of are,also
R62361 T29672 T95444 arg1Of datasets,available
R89109 T46398 T17171 arg1Of were,","
R65623 T37597 T88916 arg1Of data,only
R22986 T37597 T2700 arg1Of data,the
R34869 T37597 T19064 arg1Of data,HIV
R99409 T19064 T16401 arg1Of HIV,and
R21820 T74879 T16401 arg2Of SARS,and
R87987 T37597 T74879 arg1Of data,SARS
R84789 T37597 T46398 arg1Of data,were
R79506 T10901 T46398 arg2Of of,were
R74395 T37597 T10901 arg1Of data,of
R7658 T58744 T10901 arg2Of quality,of
R98976 T58744 T19935 arg1Of quality,sufficient
R4181 T58744 T47642 arg1Of quality,(
R34223 T27616 T47642 arg2Of Fig. 5,(
R6426 T15042 T47642 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T103 229-232 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T129 37-41 Species denotes SARS NCBItxid:694009
T130 135-139 Species denotes MERS NCBItxid:1335626
T131 148-158 Species denotes chimpanzee NCBItxid:9598
T132 159-188 Species denotes simian immunodeficiency virus NCBItxid:11723
T133 190-196 Species denotes SIVcpz NCBItxid:388909
T134 229-232 Species denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T139 237-241 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T106 87-283 Sentence denotes Although cryo-EM datasets of fully glycosylated MERS S41 and chimpanzee simian immunodeficiency virus (SIVcpz)53 are also available, only the HIV and SARS data were of sufficient quality (Fig. 5).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T61 37-41 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T62 166-182 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T63 237-241 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
665 37-43 Species denotes SARS 2 Tax:2697049
689 135-139 Disease denotes MERS MESH:D018352
666 148-158 Species denotes chimpanzee Tax:9598
667 159-197 Species denotes simian immunodeficiency virus (SIVcpz) Tax:11723
690 237-241 Disease denotes SARS MESH:D045169

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 166-182 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T106 87-283 Sentence denotes Although cryo-EM datasets of fully glycosylated MERS S41 and chimpanzee simian immunodeficiency virus (SIVcpz)53 are also available, only the HIV and SARS data were of sufficient quality (Fig. 5).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 166-182 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721