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PMC:7253482 / 15852-16197 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
556 73-76 Species denotes CoV Tax:11118
557 268-277 Species denotes MERS CoVs Tax:1335626
566 242-248 Chemical denotes glycan MESH:D011134
570 259-263 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T95 79-87 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T96 145-152 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T97 317-327 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T56 259-263 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T95 94-96 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4c

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T183 79-87 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T184 145-152 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T185 317-322 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T186 323-327 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T54724 3-9 VBN denotes mapped
T45778 10-14 IN denotes onto
T98923 15-18 DT denotes the
T59533 19-24 RB denotes fully
T25862 25-37 VBN denotes glycosylated
T32515 38-48 JJ denotes structural
T94405 49-54 NN denotes model
T76643 55-57 IN denotes of
T13755 58-61 DT denotes the
T14482 62-72 JJ denotes respective
T65032 73-76 NN denotes CoV
T12704 77-78 NN denotes S
T70323 79-87 NNS denotes proteins
T33888 88-89 -LRB- denotes (
T60190 89-96 NN denotes Fig. 4c
T27628 96-97 -RRB- denotes )
T87038 97-98 -COMMA- denotes ,
T49843 99-107 NNS denotes hotspots
T77547 108-110 IN denotes of
T63244 111-120 NNS denotes mutations
T5765 121-125 VBD denotes were
T8574 126-137 VBN denotes highlighted
T21020 138-140 IN denotes on
T89986 141-144 DT denotes the
T65568 145-152 NN denotes protein
T63130 153-160 NN denotes surface
T96535 161-171 IN denotes throughout
T21467 172-175 DT denotes the
T66745 176-182 NN denotes trimer
T45284 183-192 VBG denotes revealing
T17381 193-202 JJ denotes extensive
T55156 203-218 NNS denotes vulnerabilities
T13067 219-229 VBG denotes permeating
T40910 230-237 IN denotes through
T14483 238-241 DT denotes the
T29556 242-248 NN denotes glycan
T94871 249-255 NN denotes shield
T71413 256-258 IN denotes of
T81413 259-263 NNS denotes SARS
T68523 264-267 CC denotes and
T70297 268-272 NNP denotes MERS
T12679 273-277 NNP denotes CoVs
T87216 279-281 PRP denotes It
T15902 282-284 VBZ denotes is
T6523 285-296 JJ denotes interesting
T19232 297-299 TO denotes to
T97839 300-304 VB denotes note
T99309 305-308 DT denotes the
T40498 309-313 NN denotes lack
T81866 314-316 IN denotes of
T9331 317-327 JJ denotes amino-acid
T44303 328-337 NN denotes diversity
T83531 338-340 IN denotes on
T76133 341-344 DT denotes the
R36115 T54724 T45778 arg1Of mapped,onto
R3433 T94405 T45778 arg2Of model,onto
R53298 T94405 T98923 arg1Of model,the
R43272 T25862 T59533 arg1Of glycosylated,fully
R50247 T94405 T25862 arg1Of model,glycosylated
R26701 T94405 T32515 arg1Of model,structural
R74679 T94405 T76643 arg1Of model,of
R51542 T70323 T76643 arg2Of proteins,of
R2173 T70323 T13755 arg1Of proteins,the
R85398 T70323 T14482 arg1Of proteins,respective
R51942 T70323 T65032 arg1Of proteins,CoV
R5341 T70323 T12704 arg1Of proteins,S
R68632 T70323 T33888 arg1Of proteins,(
R28101 T60190 T33888 arg2Of Fig. 4c,(
R79333 T27628 T33888 arg3Of ),(
R50373 T8574 T87038 arg1Of highlighted,","
R78452 T49843 T77547 arg1Of hotspots,of
R70051 T63244 T77547 arg2Of mutations,of
R86243 T49843 T5765 arg1Of hotspots,were
R62080 T8574 T5765 arg2Of highlighted,were
R36037 T49843 T8574 arg2Of hotspots,highlighted
R69989 T8574 T21020 arg1Of highlighted,on
R21042 T63130 T21020 arg2Of surface,on
R99168 T63130 T89986 arg1Of surface,the
R84573 T63130 T65568 arg1Of surface,protein
R18040 T8574 T96535 arg1Of highlighted,throughout
R83519 T66745 T96535 arg2Of trimer,throughout
R40238 T66745 T21467 arg1Of trimer,the
R11527 T66745 T45284 arg1Of trimer,revealing
R26362 T55156 T45284 arg2Of vulnerabilities,revealing
R13176 T55156 T17381 arg1Of vulnerabilities,extensive
R81127 T55156 T13067 arg1Of vulnerabilities,permeating
R91880 T13067 T40910 arg1Of permeating,through
R25217 T94871 T40910 arg2Of shield,through
R32001 T94871 T14483 arg1Of shield,the
R4994 T94871 T29556 arg1Of shield,glycan
R90788 T94871 T71413 arg1Of shield,of
R72986 T68523 T71413 arg2Of and,of
R8907 T81413 T68523 arg1Of SARS,and
R79279 T12679 T68523 arg2Of CoVs,and
R85917 T12679 T70297 arg1Of CoVs,MERS
R32448 T97839 T87216 arg1Of note,It
R64157 T97839 T15902 arg1Of note,is
R45114 T6523 T15902 arg2Of interesting,is
R15047 T97839 T6523 arg1Of note,interesting
R54914 T97839 T19232 arg1Of note,to
R93413 T40498 T97839 arg2Of lack,note
R52293 T40498 T99309 arg1Of lack,the
R68351 T40498 T81866 arg1Of lack,of
R25896 T44303 T81866 arg2Of diversity,of
R99374 T44303 T9331 arg1Of diversity,amino-acid
R59233 T40498 T83531 arg1Of lack,on

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T94 79-87 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T95 145-152 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T96 317-327 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T130 79-87 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T131 145-152 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T132 317-322 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T106 259-263 Species denotes SARS NCBItxid:694009
T107 268-272 Species denotes MERS NCBItxid:1335626

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T51 259-263 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
556 73-76 Species denotes CoV Tax:11118
566 242-248 Chemical denotes glycan MESH:D011134
570 259-263 Disease denotes SARS MESH:D045169
557 268-277 Species denotes MERS CoVs Tax:1335626

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T3703 77-87 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9