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PMC:7253482 / 1491-2299 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
67 690-695 Gene denotes spike Gene:43740568
68 0-13 Species denotes Coronaviruses Tax:11118
69 15-19 Species denotes CoVs Tax:11118
70 115-121 Species denotes humans Tax:9606
71 132-136 Species denotes CoVs Tax:11118
72 178-183 Species denotes human Tax:9606
73 223-268 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
74 270-278 Species denotes SARS-CoV Tax:694009
75 290-345 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
76 377-387 Species denotes SARS-CoV-2 Tax:2697049
77 521-527 Species denotes humans Tax:9606
78 70-91 Disease denotes respiratory disorders MESH:D012131
79 402-411 Disease denotes mortality MESH:D003643

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 700-708 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 70-91 Disease denotes respiratory disorders http://purl.obolibrary.org/obo/MONDO_0005087
T7 223-256 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 270-278 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 270-274 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 377-385 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 377-381 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T8 147-148 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 178-183 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T10 521-527 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T11 677-682 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 700-708 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T6 35-44 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogens
T7 82-91 http://purl.obolibrary.org/obo/OGMS_0000045 denotes disorders
T8 630-639 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogens

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T225 0-13 NNS denotes Coronaviruses
T226 14-15 -LRB- denotes (
T227 15-19 NNS denotes CoVs
T228 19-20 -RRB- denotes )
T229 21-24 VBP denotes are
T230 25-34 VBN denotes enveloped
T231 35-44 NNS denotes pathogens
T232 45-56 JJ denotes responsible
T233 57-60 IN denotes for
T234 61-69 JJ denotes multiple
T235 70-81 JJ denotes respiratory
T236 82-91 NNS denotes disorders
T237 92-94 IN denotes of
T238 95-102 VBG denotes varying
T239 103-111 NN denotes severity
T240 112-114 IN denotes in
T241 115-122 NN denotes humans1
T242 124-131 JJ denotes Certain
T243 132-136 NNS denotes CoVs
T244 137-146 VBP denotes represent
T245 147-148 DT denotes a
T246 149-160 JJ denotes significant
T247 161-167 NN denotes threat
T248 168-170 TO denotes to
T249 171-177 JJ denotes global
T250 178-183 JJ denotes human
T251 184-190 NN denotes health
T252 190-191 -COMMA- denotes ,
T253 192-194 IN denotes as
T254 195-206 VBN denotes illustrated
T255 207-209 IN denotes by
T256 210-219 NNS denotes outbreaks
T257 220-222 IN denotes of
T258 223-229 JJ denotes severe
T259 230-235 JJ denotes acute
T260 236-247 JJ denotes respiratory
T261 248-256 NN denotes syndrome
T262 257-268 NN denotes coronavirus
T263 269-270 -LRB- denotes (
T264 270-278 NN denotes SARS-CoV
T265 278-279 -RRB- denotes )
T266 280-282 IN denotes in
T267 283-288 CD denotes 20032
T268 288-289 -COMMA- denotes ,
T269 290-296 NNP denotes Middle
T270 297-301 NNP denotes East
T271 302-313 JJ denotes respiratory
T272 314-322 NN denotes syndrome
T273 323-334 NN denotes coronavirus
T274 335-336 -LRB- denotes (
T275 336-344 NN denotes MERS-CoV
T276 344-345 -RRB- denotes )
T277 346-348 IN denotes in
T278 349-354 CD denotes 20123
T279 354-355 -COMMA- denotes ,
T280 356-359 CC denotes and
T281 360-364 RBS denotes most
T282 365-373 RB denotes recently
T283 374-376 IN denotes of
T284 377-388 NN denotes SARS-CoV-24
T285 390-395 VBN denotes Given
T286 396-401 PRP-DOLLAR- denotes their
T287 402-411 NN denotes mortality
T288 412-417 NNS denotes rates
T289 417-418 -COMMA- denotes ,
T290 419-422 DT denotes the
T291 423-430 JJ denotes current
T292 431-435 NN denotes lack
T293 436-438 IN denotes of
T294 439-447 VBN denotes targeted
T295 448-458 NNS denotes treatments
T296 459-462 CC denotes and
T297 463-471 JJ denotes licensed
T298 472-480 NNS denotes vaccines
T299 480-481 -COMMA- denotes ,
T300 482-485 CC denotes and
T301 486-491 PRP-DOLLAR- denotes their
T302 492-500 NN denotes capacity
T303 501-503 TO denotes to
T304 504-512 VB denotes transmit
T305 513-520 IN denotes between
T306 521-527 NNS denotes humans
T307 528-531 CC denotes and
T308 532-538 IN denotes across
T309 539-546 NNS denotes species
T310 547-558 NN denotes barriers5,6
T311 558-559 -COMMA- denotes ,
T312 560-565 EX denotes there
T313 566-568 VBZ denotes is
T314 569-571 DT denotes an
T315 572-578 JJ denotes urgent
T316 579-583 NN denotes need
T317 584-587 IN denotes for
T318 588-597 JJ denotes effective
T319 598-613 NNS denotes countermeasures
T320 614-616 TO denotes to
T321 617-623 VB denotes combat
T322 624-629 DT denotes these
T323 630-639 NNS denotes pathogens
T324 641-648 VBG denotes Ongoing
T325 649-656 NN denotes vaccine
T326 657-668 NN denotes development
T327 669-676 NNS denotes efforts
T328 677-682 NN denotes focus
T329 683-685 IN denotes on
T330 686-689 DT denotes the
T331 690-695 NN denotes spike
T332 696-697 -LRB- denotes (
T333 697-698 NN denotes S
T334 698-699 -RRB- denotes )
T335 700-708 NNS denotes proteins
T336 709-713 WDT denotes that
T337 714-722 VBP denotes protrude
T338 723-727 IN denotes from
T339 728-731 DT denotes the
T340 732-737 JJ denotes viral
T341 738-746 NN denotes envelope
T342 747-750 CC denotes and
T343 751-761 VB denotes constitute
T344 762-765 DT denotes the
T345 766-770 JJ denotes main
T346 771-777 NN denotes target
T347 778-780 IN denotes of
T348 781-793 VBG denotes neutralizing
T349 794-807 NN denotes antibodies7,8
R221 T225 T226 arg1Of Coronaviruses,(
R222 T227 T226 arg2Of CoVs,(
R223 T228 T226 arg3Of ),(
R224 T225 T229 arg1Of Coronaviruses,are
R225 T231 T229 arg2Of pathogens,are
R226 T231 T230 arg2Of pathogens,enveloped
R227 T231 T232 arg1Of pathogens,responsible
R228 T232 T233 arg1Of responsible,for
R229 T236 T233 arg2Of disorders,for
R230 T236 T234 arg1Of disorders,multiple
R231 T236 T235 arg1Of disorders,respiratory
R232 T236 T237 arg1Of disorders,of
R233 T239 T237 arg2Of severity,of
R234 T239 T238 arg1Of severity,varying
R235 T239 T240 arg1Of severity,in
R236 T241 T240 arg2Of humans1,in
R237 T243 T242 arg1Of CoVs,Certain
R238 T243 T244 arg1Of CoVs,represent
R239 T247 T244 arg2Of threat,represent
R240 T247 T245 arg1Of threat,a
R241 T247 T246 arg1Of threat,significant
R242 T247 T248 arg1Of threat,to
R243 T251 T248 arg2Of health,to
R244 T251 T249 arg1Of health,global
R245 T251 T250 arg1Of health,human
R246 T244 T252 arg1Of represent,","
R247 T244 T253 arg1Of represent,as
R248 T254 T253 arg2Of illustrated,as
R249 T256 T254 arg1Of outbreaks,illustrated
R250 T256 T255 arg2Of outbreaks,by
R251 T256 T257 arg1Of outbreaks,of
R252 T262 T257 arg2Of coronavirus,of
R253 T262 T258 arg1Of coronavirus,severe
R254 T262 T259 arg1Of coronavirus,acute
R255 T262 T260 arg1Of coronavirus,respiratory
R256 T262 T261 arg1Of coronavirus,syndrome
R257 T262 T263 arg1Of coronavirus,(
R258 T264 T263 arg2Of SARS-CoV,(
R259 T265 T263 arg3Of ),(
R260 T262 T266 arg1Of coronavirus,in
R261 T267 T266 arg2Of 20032,in
R262 T256 T268 arg1Of outbreaks,","
R263 T273 T268 arg2Of coronavirus,","
R264 T270 T269 arg1Of East,Middle
R265 T273 T270 arg1Of coronavirus,East
R266 T273 T271 arg1Of coronavirus,respiratory
R267 T273 T272 arg1Of coronavirus,syndrome
R268 T273 T274 arg1Of coronavirus,(
R269 T275 T274 arg2Of MERS-CoV,(
R270 T276 T274 arg3Of ),(
R271 T273 T277 arg1Of coronavirus,in
R272 T278 T277 arg2Of 20123,in
R273 T280 T279 arg1Of and,","
R274 T277 T280 arg1Of in,and
R275 T283 T280 arg2Of of,and
R276 T282 T281 arg1Of recently,most
R277 T283 T282 arg1Of of,recently
R278 T273 T283 arg1Of coronavirus,of
R279 T284 T283 arg2Of SARS-CoV-24,of
R280 T313 T285 arg1Of is,Given
R281 T300 T285 arg2Of and,Given
R282 T288 T286 arg1Of rates,their
R283 T288 T287 arg1Of rates,mortality
R284 T288 T289 arg1Of rates,","
R285 T292 T289 arg2Of lack,","
R286 T292 T290 arg1Of lack,the
R287 T292 T291 arg1Of lack,current
R288 T292 T293 arg1Of lack,of
R289 T296 T293 arg2Of and,of
R290 T295 T294 arg2Of treatments,targeted
R291 T295 T296 arg1Of treatments,and
R292 T298 T296 arg2Of vaccines,and
R293 T298 T297 arg1Of vaccines,licensed
R294 T300 T299 arg1Of and,","
R295 T289 T300 arg1Of ",",and
R296 T302 T300 arg2Of capacity,and
R297 T302 T301 arg1Of capacity,their
R298 T304 T303 arg1Of transmit,to
R299 T302 T303 modOf capacity,to
R300 T304 T305 arg1Of transmit,between
R301 T306 T305 arg2Of humans,between
R302 T285 T307 arg1Of Given,and
R303 T308 T307 arg2Of across,and
R304 T313 T308 arg1Of is,across
R305 T310 T308 arg2Of "barriers5,6",across
R306 T310 T309 arg1Of "barriers5,6",species
R307 T313 T311 arg1Of is,","
R308 T312 T313 arg1Of there,is
R309 T316 T313 arg2Of need,is
R310 T316 T314 arg1Of need,an
R311 T316 T315 arg1Of need,urgent
R312 T316 T317 arg1Of need,for
R313 T319 T317 arg2Of countermeasures,for
R314 T321 T317 arg3Of combat,for
R315 T319 T318 arg1Of countermeasures,effective
R316 T321 T320 arg1Of combat,to
R317 T319 T321 arg1Of countermeasures,combat
R318 T323 T321 arg2Of pathogens,combat
R319 T323 T322 arg1Of pathogens,these
R320 T328 T324 arg1Of focus,Ongoing
R321 T328 T325 arg1Of focus,vaccine
R322 T328 T326 arg1Of focus,development
R323 T328 T327 arg1Of focus,efforts
R324 T328 T329 arg1Of focus,on
R325 T335 T329 arg2Of proteins,on
R326 T335 T330 arg1Of proteins,the
R327 T335 T331 arg1Of proteins,spike
R328 T335 T332 arg1Of proteins,(
R329 T333 T332 arg2Of S,(
R330 T334 T332 arg3Of ),(
R331 T335 T336 arg1Of proteins,that
R332 T335 T337 arg1Of proteins,protrude
R333 T337 T338 arg1Of protrude,from
R334 T341 T338 arg2Of envelope,from
R335 T341 T339 arg1Of envelope,the
R336 T341 T340 arg1Of envelope,viral
R337 T337 T342 arg1Of protrude,and
R338 T343 T342 arg2Of constitute,and
R339 T335 T343 arg1Of proteins,constitute
R340 T346 T343 arg2Of target,constitute
R341 T346 T344 arg1Of target,the
R342 T346 T345 arg1Of target,main
R343 T346 T347 arg1Of target,of
R344 T348 T347 arg2Of neutralizing,of
R345 T349 T348 arg2Of "antibodies7,8",neutralizing

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T10 700-708 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 700-708 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T11 178-183 Species denotes human NCBItxid:9606
T12 223-256 Species denotes severe acute respiratory syndrome NCBItxid:694009
T13 270-278 Species denotes SARS-CoV NCBItxid:694009
T14 270-274 Species denotes SARS NCBItxid:694009
T15 290-334 Species denotes Middle East respiratory syndrome coronavirus NCBItxid:1335626
T16 336-344 Species denotes MERS-CoV NCBItxid:1335626
T17 377-385 Species denotes SARS-CoV NCBItxid:694009
T18 377-381 Species denotes SARS NCBItxid:694009
T19 521-527 Species denotes humans NCBItxid:9605

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T12 0-123 Sentence denotes Coronaviruses (CoVs) are enveloped pathogens responsible for multiple respiratory disorders of varying severity in humans1.
T13 124-389 Sentence denotes Certain CoVs represent a significant threat to global human health, as illustrated by outbreaks of severe acute respiratory syndrome coronavirus (SARS-CoV) in 20032, Middle East respiratory syndrome coronavirus (MERS-CoV) in 20123, and most recently of SARS-CoV-24.
T14 390-640 Sentence denotes Given their mortality rates, the current lack of targeted treatments and licensed vaccines, and their capacity to transmit between humans and across species barriers5,6, there is an urgent need for effective countermeasures to combat these pathogens.
T15 641-808 Sentence denotes Ongoing vaccine development efforts focus on the spike (S) proteins that protrude from the viral envelope and constitute the main target of neutralizing antibodies7,8.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 70-91 Disease denotes respiratory disorders http://purl.obolibrary.org/obo/MONDO_0005087
T7 223-256 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 270-278 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 270-274 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 377-385 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 377-381 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
78 70-91 Disease denotes respiratory disorders MESH:D012131
70 115-121 Species denotes humans Tax:9606
71 132-136 Species denotes CoVs Tax:11118
72 178-183 Species denotes human Tax:9606
73 223-268 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
74 270-278 Species denotes SARS-CoV Tax:694009
75 290-345 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
76 377-387 Species denotes SARS-CoV-2 Tax:2697049
79 402-411 Disease denotes mortality MESH:D003643
77 521-527 Species denotes humans Tax:9606
67 690-695 Gene denotes spike Gene:43740568

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T714 696-708 Protein denotes (S) proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 0-123 Sentence denotes Coronaviruses (CoVs) are enveloped pathogens responsible for multiple respiratory disorders of varying severity in humans1.
T13 124-389 Sentence denotes Certain CoVs represent a significant threat to global human health, as illustrated by outbreaks of severe acute respiratory syndrome coronavirus (SARS-CoV) in 20032, Middle East respiratory syndrome coronavirus (MERS-CoV) in 20123, and most recently of SARS-CoV-24.
T14 390-640 Sentence denotes Given their mortality rates, the current lack of targeted treatments and licensed vaccines, and their capacity to transmit between humans and across species barriers5,6, there is an urgent need for effective countermeasures to combat these pathogens.
T15 641-808 Sentence denotes Ongoing vaccine development efforts focus on the spike (S) proteins that protrude from the viral envelope and constitute the main target of neutralizing antibodies7,8.