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PMC:7253482 / 13216-13798 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
499 466-479 Species denotes coronaviruses Tax:11118
500 77-84 Chemical denotes mannose MESH:D008358
501 125-132 Chemical denotes mannose MESH:D008358
502 162-169 Chemical denotes glycans MESH:D011134
503 213-225 Chemical denotes oligomannose
504 231-238 Chemical denotes glycans MESH:D011134
505 286-292 Chemical denotes glycan MESH:D011134
506 323-329 Chemical denotes glycan MESH:D011134
507 383-395 Chemical denotes oligomannose
508 401-408 Chemical denotes glycans MESH:D011134
509 532-539 Chemical denotes glycans MESH:D011134
510 15-19 Disease denotes SARS MESH:D045169
511 364-368 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T81 43-51 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T82 77-84 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T83 125-132 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T84 255-262 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T51 15-19 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T84 409-412 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T152 30-32 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T153 43-51 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T154 77-84 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T155 125-132 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T156 162-169 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T157 231-238 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T158 255-262 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T159 401-408 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T160 532-539 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T33 543-551 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogen

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T72420 0-13 RB denotes Interestingly
T27935 13-14 -COMMA- denotes ,
T18688 15-19 NN denotes SARS
T54076 20-23 CC denotes and
T91777 24-28 NN denotes HKU1
T82660 29-30 -LRB- denotes (
T80158 30-32 NN denotes SI
T18287 33-39 NN denotes Fig. 2
T26450 39-40 -RRB- denotes )
T22664 41-42 NN denotes S
T70221 43-51 NNS denotes proteins
T8587 52-55 VBD denotes did
T40209 56-59 RB denotes not
T90081 60-67 VB denotes exhibit
T47005 68-76 JJ denotes specific
T66164 77-84 NN denotes mannose
T5302 85-93 NNS denotes clusters
T65310 94-98 WDT denotes that
T95555 99-109 VBP denotes contribute
T21512 110-112 TO denotes to
T23601 113-116 DT denotes the
T71479 117-124 JJ denotes overall
T61001 125-132 NN denotes mannose
T26227 133-142 NN denotes abundance
T25050 142-143 -COMMA- denotes ,
T74525 144-147 CC denotes but
T56258 148-152 RB denotes only
T89329 153-161 VBN denotes isolated
T54715 162-169 NNS denotes glycans
T15304 170-174 VBD denotes were
T81576 175-189 VBN denotes underprocessed
T37031 191-193 PRP denotes We
T11037 194-203 VBP denotes speculate
T78740 204-208 IN denotes that
T57941 209-212 DT denotes the
T83472 213-230 JJ denotes oligomannose-type
T62928 231-238 NNS denotes glycans
T41459 239-243 RB denotes here
T13983 244-249 VBP denotes arise
T30720 250-254 IN denotes from
T96574 255-271 JJ denotes protein-directed
T55170 272-282 NN denotes inhibition
T33234 283-285 IN denotes of
T39535 286-292 NN denotes glycan
T17864 293-303 NN denotes processing
T15475 303-304 -COMMA- denotes ,
T10659 305-307 IN denotes as
T1566 308-315 VBN denotes opposed
T58559 316-318 TO denotes to
T23943 319-322 DT denotes the
T52429 323-340 JJ denotes glycan-influenced
T84994 341-351 NN denotes processing
T28395 352-360 VBN denotes observed
T8259 361-363 IN denotes on
T19314 364-368 NNS denotes MERS
T3743 370-381 RB denotes Importantly
T69555 381-382 -COMMA- denotes ,
T70877 383-400 JJ denotes oligomannose-type
T68539 401-408 NNS denotes glycans
T79414 409-412 VBZ denotes has
T32823 413-417 RB denotes also
T22023 418-422 VBN denotes been
T1963 423-433 VBN denotes implicated
T31422 434-436 IN denotes in
T32938 437-443 JJ denotes innate
T8288 444-450 JJ denotes immune
T72195 451-462 NN denotes recognition
T78182 463-465 IN denotes of
T13186 466-479 NNS denotes coronaviruses
T90164 480-482 IN denotes by
T84232 483-495 NN denotes lectins47,48
T65100 496-500 WDT denotes that
T10378 501-510 VBP denotes recognise
T13519 511-516 DT denotes these
T42882 517-531 VBN denotes underprocessed
T52825 532-539 NNS denotes glycans
T46370 540-542 IN denotes as
T72183 543-562 JJ denotes pathogen-associated
T32276 563-572 JJ denotes molecular
T39921 573-581 NNS denotes patterns
R11020 T74525 T72420 arg1Of but,Interestingly
R65982 T74525 T27935 arg1Of but,","
R82082 T18688 T54076 arg1Of SARS,and
R27590 T70221 T54076 arg2Of proteins,and
R83418 T70221 T91777 arg1Of proteins,HKU1
R79004 T70221 T82660 arg1Of proteins,(
R16336 T80158 T82660 arg2Of SI,(
R40261 T26450 T82660 arg3Of ),(
R31936 T80158 T18287 arg1Of SI,Fig. 2
R54077 T70221 T22664 arg1Of proteins,S
R24220 T54076 T8587 arg1Of and,did
R72746 T90081 T8587 arg2Of exhibit,did
R40982 T90081 T40209 arg1Of exhibit,not
R9580 T54076 T90081 arg1Of and,exhibit
R9225 T5302 T90081 arg2Of clusters,exhibit
R5524 T5302 T47005 arg1Of clusters,specific
R28308 T5302 T66164 arg1Of clusters,mannose
R33143 T5302 T65310 arg1Of clusters,that
R26511 T5302 T95555 arg1Of clusters,contribute
R58623 T95555 T21512 arg1Of contribute,to
R53797 T26227 T21512 arg2Of abundance,to
R88912 T26227 T23601 arg1Of abundance,the
R9733 T26227 T71479 arg1Of abundance,overall
R65742 T26227 T61001 arg1Of abundance,mannose
R71369 T74525 T25050 arg1Of but,","
R73678 T90081 T74525 arg1Of exhibit,but
R17326 T81576 T74525 arg2Of underprocessed,but
R80943 T54715 T56258 arg1Of glycans,only
R83314 T54715 T89329 arg2Of glycans,isolated
R96485 T54715 T15304 arg1Of glycans,were
R34068 T81576 T15304 arg2Of underprocessed,were
R56590 T54715 T81576 arg2Of glycans,underprocessed
R60780 T37031 T11037 arg1Of We,speculate
R88814 T13983 T11037 arg2Of arise,speculate
R86915 T13983 T78740 arg1Of arise,that
R73107 T62928 T57941 arg1Of glycans,the
R61476 T62928 T83472 arg1Of glycans,oligomannose-type
R46682 T62928 T41459 arg1Of glycans,here
R38434 T62928 T13983 arg1Of glycans,arise
R5382 T13983 T30720 arg1Of arise,from
R70015 T55170 T30720 arg2Of inhibition,from
R11295 T55170 T96574 arg1Of inhibition,protein-directed
R7009 T55170 T33234 arg1Of inhibition,of
R61821 T17864 T33234 arg2Of processing,of
R52218 T17864 T39535 arg1Of processing,glycan
R43123 T13983 T15475 arg1Of arise,","
R63038 T13983 T10659 arg1Of arise,as
R90078 T1566 T10659 arg2Of opposed,as
R15889 T1566 T58559 arg1Of opposed,to
R39332 T84994 T58559 arg2Of processing,to
R93289 T84994 T23943 arg1Of processing,the
R96677 T84994 T52429 arg1Of processing,glycan-influenced
R30561 T84994 T28395 arg2Of processing,observed
R56810 T28395 T8259 arg1Of observed,on
R58705 T19314 T8259 arg2Of MERS,on
R64614 T1963 T3743 arg1Of implicated,Importantly
R45481 T1963 T69555 arg1Of implicated,","
R68327 T68539 T70877 arg1Of glycans,oligomannose-type
R23849 T68539 T79414 arg1Of glycans,has
R49756 T1963 T79414 arg2Of implicated,has
R38082 T1963 T32823 arg1Of implicated,also
R14674 T68539 T22023 arg1Of glycans,been
R42646 T1963 T22023 arg2Of implicated,been
R19684 T84232 T1963 arg1Of "lectins47,48",implicated
R96045 T68539 T1963 arg2Of glycans,implicated
R70110 T1963 T31422 arg1Of implicated,in
R69140 T72195 T31422 arg2Of recognition,in
R47847 T72195 T32938 arg1Of recognition,innate
R21261 T72195 T8288 arg1Of recognition,immune
R27517 T72195 T78182 arg1Of recognition,of
R93623 T13186 T78182 arg2Of coronaviruses,of
R7917 T84232 T90164 arg2Of "lectins47,48",by
R94251 T84232 T65100 arg1Of "lectins47,48",that
R78991 T84232 T10378 arg1Of "lectins47,48",recognise
R71368 T52825 T10378 arg2Of glycans,recognise
R90040 T52825 T13519 arg1Of glycans,these
R93032 T52825 T42882 arg2Of glycans,underprocessed
R12169 T10378 T46370 arg1Of recognise,as
R12669 T39921 T46370 arg2Of patterns,as
R33706 T39921 T72183 arg1Of patterns,pathogen-associated
R25166 T39921 T32276 arg1Of patterns,molecular

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T80 43-51 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T81 77-84 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T82 125-132 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T83 255-262 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T111 43-51 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T112 77-84 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T113 125-132 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T114 162-169 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T115 231-238 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T116 255-262 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T117 401-408 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T118 532-539 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T94 15-19 Species denotes SARS NCBItxid:694009
T95 364-368 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T81 0-190 Sentence denotes Interestingly, SARS and HKU1 (SI Fig. 2) S proteins did not exhibit specific mannose clusters that contribute to the overall mannose abundance, but only isolated glycans were underprocessed.
T82 191-369 Sentence denotes We speculate that the oligomannose-type glycans here arise from protein-directed inhibition of glycan processing, as opposed to the glycan-influenced processing observed on MERS.
T83 370-582 Sentence denotes Importantly, oligomannose-type glycans has also been implicated in innate immune recognition of coronaviruses by lectins47,48 that recognise these underprocessed glycans as pathogen-associated molecular patterns.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T46 15-19 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
510 15-19 Disease denotes SARS MESH:D045169
500 77-84 Chemical denotes mannose MESH:D008358
501 125-132 Chemical denotes mannose MESH:D008358
502 162-169 Chemical denotes glycans MESH:D011134
503 213-225 Chemical denotes oligomannose
504 231-238 Chemical denotes glycans MESH:D011134
505 286-292 Chemical denotes glycan MESH:D011134
506 323-329 Chemical denotes glycan MESH:D011134
511 364-368 Disease denotes MERS MESH:D018352
507 383-395 Chemical denotes oligomannose
508 401-408 Chemical denotes glycans MESH:D011134
499 466-479 Species denotes coronaviruses Tax:11118
509 532-539 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T3636 41-51 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T33 437-450 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T30 437-450 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T34 437-450 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T81 0-190 Sentence denotes Interestingly, SARS and HKU1 (SI Fig. 2) S proteins did not exhibit specific mannose clusters that contribute to the overall mannose abundance, but only isolated glycans were underprocessed.
T82 191-369 Sentence denotes We speculate that the oligomannose-type glycans here arise from protein-directed inhibition of glycan processing, as opposed to the glycan-influenced processing observed on MERS.
T83 370-582 Sentence denotes Importantly, oligomannose-type glycans has also been implicated in innate immune recognition of coronaviruses by lectins47,48 that recognise these underprocessed glycans as pathogen-associated molecular patterns.

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T47 77-84 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose
T48 125-132 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose