PMC:7253233 / 8820-9251 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"293","span":{"begin":365,"end":383},"obj":"Gene"},{"id":"295","span":{"begin":4,"end":11},"obj":"Species"},{"id":"298","span":{"begin":298,"end":302},"obj":"Chemical"},{"id":"299","span":{"begin":303,"end":311},"obj":"Chemical"},{"id":"300","span":{"begin":328,"end":338},"obj":"Chemical"},{"id":"310","span":{"begin":54,"end":65},"obj":"Disease"},{"id":"311","span":{"begin":115,"end":127},"obj":"Disease"},{"id":"312","span":{"begin":242,"end":258},"obj":"Disease"},{"id":"313","span":{"begin":271,"end":290},"obj":"Disease"}],"attributes":[{"id":"A293","pred":"tao:has_database_id","subj":"293","obj":"Gene:1401"},{"id":"A295","pred":"tao:has_database_id","subj":"295","obj":"Tax:9606"},{"id":"A298","pred":"tao:has_database_id","subj":"298","obj":"MESH:D014508"},{"id":"A299","pred":"tao:has_database_id","subj":"299","obj":"MESH:D009584"},{"id":"A300","pred":"tao:has_database_id","subj":"300","obj":"MESH:D003404"},{"id":"A310","pred":"tao:has_database_id","subj":"310","obj":"MESH:D008231"},{"id":"A311","pred":"tao:has_database_id","subj":"311","obj":"MESH:D001778"},{"id":"A312","pred":"tao:has_database_id","subj":"312","obj":"MESH:D013921"},{"id":"A313","pred":"tao:has_database_id","subj":"313","obj":"MESH:D058186"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T47","span":{"begin":91,"end":101},"obj":"Body_part"},{"id":"T48","span":{"begin":277,"end":283},"obj":"Body_part"},{"id":"T49","span":{"begin":292,"end":297},"obj":"Body_part"},{"id":"T50","span":{"begin":376,"end":383},"obj":"Body_part"}],"attributes":[{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma7203"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T36","span":{"begin":277,"end":283},"obj":"Body_part"},{"id":"T37","span":{"begin":292,"end":297},"obj":"Body_part"}],"attributes":[{"id":"A36","pred":"uberon_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"A37","pred":"uberon_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T78","span":{"begin":54,"end":65},"obj":"Disease"},{"id":"T79","span":{"begin":115,"end":127},"obj":"Disease"},{"id":"T80","span":{"begin":242,"end":258},"obj":"Disease"},{"id":"T81","span":{"begin":271,"end":290},"obj":"Disease"},{"id":"T82","span":{"begin":284,"end":290},"obj":"Disease"}],"attributes":[{"id":"A78","pred":"mondo_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/MONDO_0003783"},{"id":"A79","pred":"mondo_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/MONDO_0001531"},{"id":"A80","pred":"mondo_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/MONDO_0002049"},{"id":"A81","pred":"mondo_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/MONDO_0002492"},{"id":"A82","pred":"mondo_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/MONDO_0021178"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T103","span":{"begin":260,"end":263},"obj":"http://purl.obolibrary.org/obo/CLO_0054061"},{"id":"T104","span":{"begin":277,"end":283},"obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"T105","span":{"begin":277,"end":283},"obj":"http://www.ebi.ac.uk/efo/EFO_0000927"},{"id":"T106","span":{"begin":277,"end":283},"obj":"http://www.ebi.ac.uk/efo/EFO_0000929"},{"id":"T107","span":{"begin":292,"end":297},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T108","span":{"begin":292,"end":297},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T18","span":{"begin":200,"end":203},"obj":"Chemical"},{"id":"T19","span":{"begin":298,"end":302},"obj":"Chemical"},{"id":"T20","span":{"begin":303,"end":311},"obj":"Chemical"},{"id":"T21","span":{"begin":328,"end":338},"obj":"Chemical"},{"id":"T22","span":{"begin":376,"end":383},"obj":"Chemical"}],"attributes":[{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_3088"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_16199"},{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_25555"},{"id":"A21","pred":"chebi_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/CHEBI_16737"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T57","span":{"begin":54,"end":65},"obj":"Phenotype"},{"id":"T58","span":{"begin":115,"end":127},"obj":"Phenotype"},{"id":"T59","span":{"begin":212,"end":228},"obj":"Phenotype"},{"id":"T60","span":{"begin":242,"end":258},"obj":"Phenotype"},{"id":"T61","span":{"begin":271,"end":290},"obj":"Phenotype"}],"attributes":[{"id":"A57","pred":"hp_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/HP_0001888"},{"id":"A58","pred":"hp_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/HP_0003256"},{"id":"A59","pred":"hp_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/HP_0033106"},{"id":"A60","pred":"hp_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/HP_0001873"},{"id":"A61","pred":"hp_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/HP_0001919"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}

{"project":"LitCovid-sentences","denotations":[{"id":"T69","span":{"begin":0,"end":431},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L."}