PMC:7252096 / 98121-98913
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1093 | 111-116 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T1094 | 217-220 | Body_part | denotes | l/h | http://purl.org/sig/ont/fma/fma74642 |
| T1095 | 393-397 | Body_part | denotes | mRNA | http://purl.org/sig/ont/fma/fma67122 |
| T1096 | 602-607 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T1097 | 683-686 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T1098 | 709-713 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1602 | 111-116 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1603 | 602-607 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1604 | 652-653 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1605 | 709-713 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1606 | 742-743 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T5995 | 683-686 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T84 | 393-409 | http://purl.obolibrary.org/obo/GO_0009299 | denotes | mRNA transcripts |
| T85 | 470-479 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T704 | 0-94 | Sentence | denotes | Drop-seq experiments were performed according to the original protocol (Macosko et al., 2015). |
| T705 | 95-221 | Sentence | denotes | Briefly, single cells (100/μl) were co-encapsulated in droplets with barcoded beads (120/μl, ChemGenes) at rates of 4000 μl/h. |
| T706 | 222-336 | Sentence | denotes | Droplet emulsions were collected for 10-20 min/each prior to droplet breakage by perfluorooctanol (Sigma-Aldrich). |
| T707 | 337-457 | Sentence | denotes | After breakage, beads were harvested and the hybridized mRNA transcripts reverse transcribed (Maxima RT, Thermo Fisher). |
| T708 | 458-534 | Sentence | denotes | Exonuclease digestion and PCR were carried out as described (12 PCR cycles). |
| T709 | 535-701 | Sentence | denotes | For each sample, 1 ng of pre-amplified cDNA from an estimated 1000 cells was tagmented by Nextera XT (Illumina) with a custom P5-primer (Integrated DNA Technologies). |
| T710 | 702-792 | Sentence | denotes | Single-cell libraries were sequenced in a 100 bp paired-end run on the Illumina HiSeq4000. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 2621 | 303-319 | Chemical | denotes | perfluorooctanol |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32413319-26000488-20790573 | 88-92 | 26000488 | denotes | 2015 |