PMC:7252096 / 92197-93300 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7252096","sourcedb":"PMC","sourceid":"7252096","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7252096","text":"Mice were housed in individually ventilated cages during the MHV68 infection period. MHV68 stocks were grown and quantified by plaque assay as previously described (Adler et al., 2000). Mice were infected intranasally (i.n.) with 5 × 10∗4 plaque forming units of MHV68 diluted in PBS in a total volume of 30 μl. Prior to i.n. infection, mice were anesthetized with medetomidine–midazolam–fentanyl. At the predetermined time points, mice were sacrificed by cervical dislocation and lung tissue was processed for subsequent experiments. All lobes were removed, minced and transferred for mild enzymatic digestion for 20-30 min at 37°C in an enzymatic mix containing Dispase (50 caseinolytic U/mL), Collagenase (2 mg/mL), Elastase (1 mg/mL), and DNase I (30 μg/mL). Single cells were harvested by straining the digested tissue suspension through a 70μm strainer. After centrifugation at 300 x g for 5 min, single cells were counted, and prepared as a single cell suspension. For Drop-seq, cells were aliquoted in PBS supplemented with 0.04% of bovine serum albumin at a final concentration of 100 cells/μl.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1047","span":{"begin":481,"end":485},"obj":"Body_part"},{"id":"T1048","span":{"begin":486,"end":492},"obj":"Body_part"},{"id":"T1049","span":{"begin":770,"end":775},"obj":"Body_part"},{"id":"T1050","span":{"begin":817,"end":823},"obj":"Body_part"},{"id":"T1051","span":{"begin":910,"end":915},"obj":"Body_part"},{"id":"T1052","span":{"begin":955,"end":959},"obj":"Body_part"},{"id":"T1053","span":{"begin":986,"end":991},"obj":"Body_part"},{"id":"T1054","span":{"begin":1048,"end":1053},"obj":"Body_part"},{"id":"T1055","span":{"begin":1094,"end":1099},"obj":"Body_part"}],"attributes":[{"id":"A1047","pred":"fma_id","subj":"T1047","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A1048","pred":"fma_id","subj":"T1048","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A1049","pred":"fma_id","subj":"T1049","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1050","pred":"fma_id","subj":"T1050","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A1051","pred":"fma_id","subj":"T1051","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1052","pred":"fma_id","subj":"T1052","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1053","pred":"fma_id","subj":"T1053","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1054","pred":"fma_id","subj":"T1054","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A1055","pred":"fma_id","subj":"T1055","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T1047","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1048","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1049","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1050","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1051","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1052","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1053","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1054","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1055","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T224","span":{"begin":481,"end":485},"obj":"Body_part"},{"id":"T225","span":{"begin":486,"end":492},"obj":"Body_part"},{"id":"T226","span":{"begin":817,"end":823},"obj":"Body_part"},{"id":"T227","span":{"begin":1048,"end":1053},"obj":"Body_part"}],"attributes":[{"id":"A224","pred":"uberon_id","subj":"T224","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A225","pred":"uberon_id","subj":"T225","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A226","pred":"uberon_id","subj":"T226","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A227","pred":"uberon_id","subj":"T227","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"subj":"T224","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T225","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T226","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T227","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T360","span":{"begin":67,"end":76},"obj":"Disease"},{"id":"T361","span":{"begin":326,"end":335},"obj":"Disease"}],"attributes":[{"id":"A360","pred":"mondo_id","subj":"T360","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A361","pred":"mondo_id","subj":"T361","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T360","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T361","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1533","span":{"begin":287,"end":288},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1534","span":{"begin":481,"end":485},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T1535","span":{"begin":481,"end":485},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T1536","span":{"begin":770,"end":775},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1537","span":{"begin":843,"end":844},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1538","span":{"begin":910,"end":915},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1539","span":{"begin":946,"end":947},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1540","span":{"begin":955,"end":959},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1541","span":{"begin":986,"end":991},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1542","span":{"begin":1065,"end":1066},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1543","span":{"begin":1094,"end":1099},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1533","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1534","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1535","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1536","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1537","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1538","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1539","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1540","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1541","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1542","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1543","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T54152","span":{"begin":365,"end":377},"obj":"Chemical"},{"id":"T44089","span":{"begin":378,"end":387},"obj":"Chemical"},{"id":"T72746","span":{"begin":388,"end":396},"obj":"Chemical"}],"attributes":[{"id":"A29934","pred":"chebi_id","subj":"T54152","obj":"http://purl.obolibrary.org/obo/CHEBI_48552"},{"id":"A7931","pred":"chebi_id","subj":"T44089","obj":"http://purl.obolibrary.org/obo/CHEBI_6931"},{"id":"A69421","pred":"chebi_id","subj":"T72746","obj":"http://purl.obolibrary.org/obo/CHEBI_119915"},{"subj":"T54152","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T44089","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T72746","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T69","span":{"begin":601,"end":610},"obj":"http://purl.obolibrary.org/obo/GO_0007586"},{"id":"T70","span":{"begin":743,"end":750},"obj":"http://purl.obolibrary.org/obo/GO_0004530"}],"attributes":[{"subj":"T69","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T70","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T658","span":{"begin":0,"end":84},"obj":"Sentence"},{"id":"T659","span":{"begin":85,"end":185},"obj":"Sentence"},{"id":"T660","span":{"begin":186,"end":311},"obj":"Sentence"},{"id":"T661","span":{"begin":312,"end":397},"obj":"Sentence"},{"id":"T662","span":{"begin":398,"end":534},"obj":"Sentence"},{"id":"T663","span":{"begin":535,"end":762},"obj":"Sentence"},{"id":"T664","span":{"begin":763,"end":859},"obj":"Sentence"},{"id":"T665","span":{"begin":860,"end":971},"obj":"Sentence"},{"id":"T666","span":{"begin":972,"end":1103},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T658","pred":"source","obj":"LitCovid-sentences"},{"subj":"T659","pred":"source","obj":"LitCovid-sentences"},{"subj":"T660","pred":"source","obj":"LitCovid-sentences"},{"subj":"T661","pred":"source","obj":"LitCovid-sentences"},{"subj":"T662","pred":"source","obj":"LitCovid-sentences"},{"subj":"T663","pred":"source","obj":"LitCovid-sentences"},{"subj":"T664","pred":"source","obj":"LitCovid-sentences"},{"subj":"T665","pred":"source","obj":"LitCovid-sentences"},{"subj":"T666","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2533","span":{"begin":1048,"end":1061},"obj":"Gene"},{"id":"2534","span":{"begin":0,"end":4},"obj":"Species"},{"id":"2535","span":{"begin":61,"end":66},"obj":"Species"},{"id":"2536","span":{"begin":85,"end":90},"obj":"Species"},{"id":"2537","span":{"begin":91,"end":97},"obj":"Species"},{"id":"2538","span":{"begin":186,"end":190},"obj":"Species"},{"id":"2539","span":{"begin":263,"end":268},"obj":"Species"},{"id":"2540","span":{"begin":337,"end":341},"obj":"Species"},{"id":"2541","span":{"begin":432,"end":436},"obj":"Species"},{"id":"2542","span":{"begin":280,"end":283},"obj":"Chemical"},{"id":"2543","span":{"begin":365,"end":377},"obj":"Chemical"},{"id":"2544","span":{"begin":378,"end":387},"obj":"Chemical"},{"id":"2545","span":{"begin":388,"end":396},"obj":"Chemical"},{"id":"2546","span":{"begin":1010,"end":1013},"obj":"Chemical"},{"id":"2547","span":{"begin":67,"end":76},"obj":"Disease"},{"id":"2548","span":{"begin":196,"end":204},"obj":"Disease"},{"id":"2549","span":{"begin":326,"end":335},"obj":"Disease"}],"attributes":[{"id":"A2533","pred":"tao:has_database_id","subj":"2533","obj":"Gene:213"},{"id":"A2534","pred":"tao:has_database_id","subj":"2534","obj":"Tax:10090"},{"id":"A2535","pred":"tao:has_database_id","subj":"2535","obj":"Tax:1440122"},{"id":"A2536","pred":"tao:has_database_id","subj":"2536","obj":"Tax:1440122"},{"id":"A2537","pred":"tao:has_database_id","subj":"2537","obj":"Tax:3724"},{"id":"A2538","pred":"tao:has_database_id","subj":"2538","obj":"Tax:10090"},{"id":"A2539","pred":"tao:has_database_id","subj":"2539","obj":"Tax:1440122"},{"id":"A2540","pred":"tao:has_database_id","subj":"2540","obj":"Tax:10090"},{"id":"A2541","pred":"tao:has_database_id","subj":"2541","obj":"Tax:10090"},{"id":"A2542","pred":"tao:has_database_id","subj":"2542","obj":"MESH:D007854"},{"id":"A2543","pred":"tao:has_database_id","subj":"2543","obj":"MESH:D020926"},{"id":"A2544","pred":"tao:has_database_id","subj":"2544","obj":"MESH:D008874"},{"id":"A2545","pred":"tao:has_database_id","subj":"2545","obj":"MESH:D005283"},{"id":"A2546","pred":"tao:has_database_id","subj":"2546","obj":"MESH:D007854"},{"id":"A2547","pred":"tao:has_database_id","subj":"2547","obj":"MESH:D007239"},{"id":"A2548","pred":"tao:has_database_id","subj":"2548","obj":"MESH:D007239"},{"id":"A2549","pred":"tao:has_database_id","subj":"2549","obj":"MESH:D007239"},{"subj":"2533","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2534","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2535","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2536","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2537","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2538","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2539","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2540","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2541","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2542","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2543","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2544","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2545","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2546","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2547","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2548","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2549","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"2_test","denotations":[{"id":"32413319-10888635-20790571","span":{"begin":179,"end":183},"obj":"10888635"}],"attributes":[{"subj":"32413319-10888635-20790571","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93bfec","default":true},{"id":"LitCovid-PD-UBERON","color":"#d9ec93"},{"id":"LitCovid-PD-MONDO","color":"#e593ec"},{"id":"LitCovid-PD-CLO","color":"#93eccb"},{"id":"LitCovid-PD-CHEBI","color":"#ecb193"},{"id":"LitCovid-PD-GO-BP","color":"#9793ec"},{"id":"LitCovid-sentences","color":"#a9ec93"},{"id":"LitCovid-PubTator","color":"#ec93c3"},{"id":"2_test","color":"#93ddec"}]}]}}