PMC:7252096 / 90462-91235
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1025 | 0-12 | Body_part | denotes | Nasal Mucosa | http://purl.org/sig/ont/fma/fma59684 |
| T1026 | 6-12 | Body_part | denotes | Mucosa | http://purl.org/sig/ont/fma/fma85355 |
| T1027 | 55-68 | Body_part | denotes | ethmoid sinus | http://purl.org/sig/ont/fma/fma84115 |
| T1028 | 95-113 | Body_part | denotes | inferior turbinate | http://purl.org/sig/ont/fma/fma54736 |
| T1029 | 464-469 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T1030 | 588-602 | Body_part | denotes | red blood cell | http://purl.org/sig/ont/fma/fma62845 |
| T1031 | 598-602 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T1032 | 707-711 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T1033 | 752-754 | Body_part | denotes | v1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T215 | 6-12 | Body_part | denotes | Mucosa | http://purl.obolibrary.org/obo/UBERON_0000344 |
| T216 | 55-68 | Body_part | denotes | ethmoid sinus | http://purl.obolibrary.org/obo/UBERON_0002453 |
| T217 | 592-597 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T359 | 55-68 | Disease | denotes | ethmoid sinus | http://purl.obolibrary.org/obo/MONDO_0005756 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1502 | 6-12 | http://purl.obolibrary.org/obo/UBERON_0000344 | denotes | Mucosa |
| T1503 | 168-172 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T1504 | 464-469 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T1505 | 490-491 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T36339 | 588-602 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | red blood cell |
| T1507 | 604-607 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | RBC |
| T1508 | 698-699 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1509 | 707-711 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T93928 | 320-326 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
| T43725 | 350-352 | Chemical | denotes | IV | http://purl.obolibrary.org/obo/CHEBI_74327 |
| T15054 | 458-462 | Chemical | denotes | EDTA | http://purl.obolibrary.org/obo/CHEBI_42191|http://purl.obolibrary.org/obo/CHEBI_64755 |
| T8956 | 625-631 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
| T22359 | 758-760 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T63 | 310-319 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
| T64 | 368-375 | http://purl.obolibrary.org/obo/GO_0004530 | denotes | DNase I |
| T65 | 434-443 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
| T66 | 609-614 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T644 | 0-32 | Sentence | denotes | Nasal Mucosa and Nasal Scrapings |
| T645 | 33-174 | Sentence | denotes | Surgical samples from ethmoid sinus and nasal scraping of the inferior turbinate were processed as described (Ordovas-Montanes et al., 2018). |
| T646 | 175-405 | Sentence | denotes | Briefly, each sample was collected into cold RPMI (Corning), minced and incubated for 30 min (15 min for nasal scrapings) at 37°C with digestion buffer containing collagenase IV (Worthington), DNase I (Roche) in RPMI with 10% FBS. |
| T647 | 406-463 | Sentence | denotes | Samples were triturated and digestion quenched with EDTA. |
| T648 | 464-773 | Sentence | denotes | Cells were filtered using a 70 μm metal strainer and pelleted by centrifugation at 500 g, rinsed with PBS, and subjected to red blood cell (RBC) lysis using ACK buffer (ThermoFisher) for 3 min on ice, and finally pelleted prepared as a single cell suspension for scRNA-seq using Seq-Well v1 or S3 (see below). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2483 | 621-624 | Gene | denotes | ACK | Gene:10188 |
| 2484 | 458-462 | Chemical | denotes | EDTA | MESH:D004492 |
| 2485 | 566-569 | Chemical | denotes | PBS | MESH:D007854 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32413319-30135581-20790569 | 168-172 | 30135581 | denotes | 2018 |