PMC:7252096 / 62134-62903
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T791 | 48-52 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T792 | 100-107 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T793 | 139-144 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T794 | 390-397 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T795 | 502-509 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T796 | 549-562 | Body_part | denotes | cell membrane | http://purl.org/sig/ont/fma/fma63841 |
| T797 | 549-553 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T798 | 602-609 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T799 | 675-690 | Body_part | denotes | plasma membrane | http://purl.org/sig/ont/fma/fma63841 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T233 | 87-95 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T234 | 87-91 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T235 | 279-287 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T236 | 279-283 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T237 | 732-740 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T238 | 732-736 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1122 | 48-52 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1123 | 78-86 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activate |
| T1124 | 139-144 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1125 | 159-165 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
| T1126 | 259-262 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T1127 | 303-304 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1128 | 337-338 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1129 | 398-408 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T1130 | 493-499 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
| T1131 | 510-513 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T1132 | 514-515 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1133 | 540-541 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1134 | 549-553 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1135 | 554-562 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T1136 | 610-620 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T1137 | 641-651 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | Activation |
| T1138 | 675-681 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T1139 | 682-690 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T45155 | 100-107 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T93849 | 390-397 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T68136 | 502-509 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T97753 | 602-609 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T417 | 0-217 | Sentence | denotes | Whether ACE2 and TMPRSS2 are needed on the same cell or soluble proteases can activate SARS-CoV-2 S protein to invade ACE2 single-positive cells is an area of active inquiry (Coutard et al., 2020, Letko et al., 2020). |
| T418 | 218-472 | Sentence | denotes | Importantly, rapidly evolving literature has identified that SARS-CoV-2-S might have a furin cleavage site, leading to a broader set of host proteases that could mediate S protein activation (Bugge et al., 2009, Coutard et al., 2020, Walls et al., 2020). |
| T419 | 473-640 | Sentence | denotes | However, because an active S protein has a finite lifetime to find a target cell membrane, the timing and cellular location of S protein activation is key to consider. |
| T420 | 641-769 | Sentence | denotes | Activation events proximal to the plasma membrane have been shown to be most effective for SARS-CoV entry (Shulla et al., 2011). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1819 | 8-12 | Gene | denotes | ACE2 | Gene:59272 |
| 1820 | 17-24 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 1821 | 118-122 | Gene | denotes | ACE2 | Gene:59272 |
| 1822 | 305-310 | Gene | denotes | furin | Gene:5045 |
| 1823 | 500-501 | Gene | denotes | S | Gene:43740568 |
| 1824 | 388-389 | Gene | denotes | S | Gene:43740568 |
| 1825 | 290-291 | Gene | denotes | S | Gene:43740568 |
| 1826 | 98-99 | Gene | denotes | S | Gene:43740568 |
| 1827 | 87-97 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1828 | 279-289 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1829 | 732-740 | Species | denotes | SARS-CoV | Tax:694009 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32413319-32057769-20790509 | 191-195 | 32057769 | denotes | 2020 |
| 32413319-32094589-20790510 | 211-215 | 32094589 | denotes | 2020 |
| 32413319-19487698-20790511 | 424-428 | 19487698 | denotes | 2009 |
| 32413319-32057769-20790512 | 446-450 | 32057769 | denotes | 2020 |
| 32413319-32155444-20790513 | 466-470 | 32155444 | denotes | 2020 |
| 32413319-21068237-20790514 | 763-767 | 21068237 | denotes | 2011 |