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PMC:7252096 / 25915-26785 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T312 14-19 Body_part denotes Ileum http://purl.org/sig/ont/fma/fma7208
T313 74-79 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T314 109-114 Body_part denotes ileum http://purl.org/sig/ont/fma/fma7208
T315 154-156 Body_part denotes v2 http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615
T317 174-179 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T318 345-361 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T319 356-361 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T320 405-420 Body_part denotes epithelial cell http://purl.org/sig/ont/fma/fma66768
T87682 416-420 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T322 465-470 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T323 474-478 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T324 518-523 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T325 541-546 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T326 684-695 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T327 837-842 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T328 863-868 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T51 14-19 Body_part denotes Ileum http://purl.obolibrary.org/obo/UBERON_0002116
T52 109-114 Body_part denotes ileum http://purl.obolibrary.org/obo/UBERON_0002116

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T63745 0-5 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T54544 14-19 http://purl.obolibrary.org/obo/UBERON_0002116 denotes Ileum
T32257 42-43 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T13453 74-79 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T98229 103-108 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T85540 109-114 http://purl.obolibrary.org/obo/UBERON_0002116 denotes ileum
T33298 122-123 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98131 174-179 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T94550 345-355 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T88352 356-361 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T25360 364-365 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T50898 405-415 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T57631 416-420 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T33621 465-470 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T56038 474-478 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T38142 518-523 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7647 541-546 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T40176 661-666 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T53351 760-767 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T18464 818-822 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T46734 837-842 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T89430 863-868 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T98 368-370 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T99 639-649 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T158 41-45 Sentence denotes (A).
T159 46-181 Sentence denotes Top: tSNE projection of all cells from healthy pediatric human ileum within a previously-unpublished 10x 3′ v2 dataset (115,569 cells).
T160 182-239 Sentence denotes Black: higher expression of ACE2 (left), TMPRSS2 (right).
T161 240-247 Sentence denotes Bottom:
T162 248-332 Sentence denotes Corresponding violin plots of expression values for ACE2 (left) and TMPRSS2 (right).
T163 333-362 Sentence denotes Solid line: epithelial cells.
T164 363-367 Sentence denotes (B).
T165 368-428 Sentence denotes Co-expression of ACE2 and TMPRSS2 by epithelial cell subset.
T166 429-486 Sentence denotes Number indicates % of ACE2+TMPRSS2+ cells by cell subset.
T167 487-600 Sentence denotes (C). tSNE projection of 13,689 cells as in Figure 3D, cells colored by co-expression of ACE2 and TMPRSS2 (black).
T168 601-605 Sentence denotes (D).
T169 606-776 Sentence denotes Expression of ACE2 and canonical interferon-responsive genes among absorptive enterocytes from Healthy (n = 2) and SHIV-infected, anti-retroviral treated animals (n = 3).
T170 777-832 Sentence denotes Bonferroni-adjusted p-values by Wilcoxon test (healthy:
T171 833-858 Sentence denotes 510 cells, SHIV-infected:
T172 859-870 Sentence denotes 636 cells).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
675 0-5 Species denotes Human Tax:9606
681 210-214 Gene denotes ACE2 Gene:59272
682 223-230 Gene denotes TMPRSS2 Gene:7113
683 300-304 Gene denotes ACE2 Gene:59272
684 316-323 Gene denotes TMPRSS2 Gene:7113
685 103-108 Species denotes human Tax:9606
690 385-389 Gene denotes ACE2 Gene:59272
691 394-401 Gene denotes TMPRSS2 Gene:7113
692 451-455 Gene denotes ACE2 Gene:59272
693 456-463 Gene denotes TMPRSS2 Gene:7113
696 575-579 Gene denotes ACE2 Gene:59272
697 584-591 Gene denotes TMPRSS2 Gene:7113
702 620-624 Gene denotes ACE2 Gene:59272
703 639-649 Gene denotes interferon Gene:3439
704 721-734 Disease denotes SHIV-infected MESH:D007239
705 844-857 Disease denotes SHIV-infected MESH:D007239