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PMC:7252096 / 2225-3592 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T40451 62-65 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T12346 719-722 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T41750 775-781 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T67748 787-792 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T10 775-781 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T11 787-792 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 104-123 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T24 259-292 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T25 294-298 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 353-361 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 353-357 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 399-407 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 563-571 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 592-601 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T31 632-640 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T32 708-716 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 708-712 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 883-891 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 883-887 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 1088-1096 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 1132-1142 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39785 0-5 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T31475 66-73 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T21591 723-726 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 524-526 Chemical denotes Lu http://purl.obolibrary.org/obo/CHEBI_33382

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T20 0-145 Sentence denotes Human coronaviruses (CoVs) are single-stranded positive-sense RNA viruses that can cause mild to severe respiratory disease (Fung and Liu, 2019).
T21 146-352 Sentence denotes Over the past two decades, zoonotic transmission events have led to the emergence of two highly pathogenic CoVs: severe acute respiratory syndrome (SARS)-CoV and Middle East respiratory syndrome (MERS)-CoV.
T22 353-562 Sentence denotes SARS-CoV-2, which causes the disease known as COVID-19, was first reported in late 2019 (Coronaviridae Study Group of the International Committee on Taxonomy of V., 2020, Lu et al., 2020, Paules et al., 2020).
T23 563-860 Sentence denotes COVID-19 is characterized by pneumonia, fever, cough, and occasional diarrhea (Guan et al., 2020, Holshue et al., 2020, Huang et al., 2020), and SARS-CoV-2 RNA has been reliably detected in nasopharyngeal swabs, sputum, and stool samples (Wang et al., 2020, Wölfel et al., 2020, Zou et al., 2020).
T24 861-1071 Sentence denotes As of April 19, 2020, SARS-CoV-2 continues to spread worldwide, and there are over 2,401,379 confirmed cases, 165,044 deaths, and 623,903 recovered individuals in 185 countries and regions (Dong et al., 2020a).
T25 1072-1367 Sentence denotes Early models of COVID-19 transmission dynamics estimate one infectious individual infects slightly over two individuals; travel restrictions reduce that spread to one individual, although these figures might evolve as more accurate epidemiological data become available (Kucharski et al., 2020).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 592-601 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 603-608 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 610-615 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 632-640 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
128 0-5 Species denotes Human Tax:9606
129 6-19 Species denotes coronaviruses Tax:11118
130 21-25 Species denotes CoVs Tax:11118
131 253-257 Species denotes CoVs Tax:11118
132 259-303 Species denotes severe acute respiratory syndrome (SARS)-CoV Tax:694009
133 342-351 Species denotes MERS)-CoV Tax:1335626
134 353-363 Species denotes SARS-CoV-2 Tax:2697049
135 708-718 Species denotes SARS-CoV-2 Tax:2697049
136 883-893 Species denotes SARS-CoV-2 Tax:2697049
137 104-123 Disease denotes respiratory disease MESH:D012140
138 173-181 Disease denotes zoonotic MESH:D015047
139 308-340 Disease denotes Middle East respiratory syndrome MESH:D018352
140 399-407 Disease denotes COVID-19 MESH:C000657245
141 563-571 Disease denotes COVID-19 MESH:C000657245
142 592-601 Disease denotes pneumonia MESH:D011014
143 603-608 Disease denotes fever MESH:D005334
144 610-615 Disease denotes cough MESH:D003371
145 632-640 Disease denotes diarrhea MESH:D003967
146 979-985 Disease denotes deaths MESH:D003643
147 1088-1096 Disease denotes COVID-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32413319-31226023-20790397 139-143 31226023 denotes 2019
32413319-32007145-20790398 535-539 32007145 denotes 2020
32413319-32004427-20790399 677-681 32004427 denotes 2020
32413319-31986264-20790400 697-701 31986264 denotes 2020
32413319-32074444-20790401 854-858 32074444 denotes 2020