PMC:7242012 / 5910-6551 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"172","span":{"begin":336,"end":346},"obj":"Species"},{"id":"173","span":{"begin":71,"end":79},"obj":"Disease"},{"id":"174","span":{"begin":251,"end":259},"obj":"Disease"},{"id":"175","span":{"begin":622,"end":630},"obj":"Disease"}],"attributes":[{"id":"A172","pred":"tao:has_database_id","subj":"172","obj":"Tax:2697049"},{"id":"A173","pred":"tao:has_database_id","subj":"173","obj":"MESH:C000657245"},{"id":"A174","pred":"tao:has_database_id","subj":"174","obj":"MESH:C000657245"},{"id":"A175","pred":"tao:has_database_id","subj":"175","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":157,"end":165},"obj":"Body_part"},{"id":"T23","span":{"begin":202,"end":208},"obj":"Body_part"},{"id":"T24","span":{"begin":347,"end":350},"obj":"Body_part"},{"id":"T25","span":{"begin":355,"end":358},"obj":"Body_part"},{"id":"T26","span":{"begin":607,"end":611},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma62873"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A26","pred":"fma_id","subj":"T26","obj":"http://purl.org/sig/ont/fma/fma25000"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T6","span":{"begin":202,"end":208},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T58","span":{"begin":71,"end":79},"obj":"Disease"},{"id":"T59","span":{"begin":251,"end":259},"obj":"Disease"},{"id":"T60","span":{"begin":336,"end":340},"obj":"Disease"},{"id":"T61","span":{"begin":622,"end":630},"obj":"Disease"}],"attributes":[{"id":"A58","pred":"mondo_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A59","pred":"mondo_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A60","pred":"mondo_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A61","pred":"mondo_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T53","span":{"begin":91,"end":95},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T54","span":{"begin":97,"end":103},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T55","span":{"begin":139,"end":146},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T56","span":{"begin":291,"end":298},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T57","span":{"begin":300,"end":306},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T58","span":{"begin":320,"end":325},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T59","span":{"begin":405,"end":409},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T60","span":{"begin":541,"end":546},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T8","span":{"begin":7,"end":28},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T9","span":{"begin":15,"end":28},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}

{"project":"LitCovid-sentences","denotations":[{"id":"T79","span":{"begin":0,"end":96},"obj":"Sentence"},{"id":"T80","span":{"begin":97,"end":246},"obj":"Sentence"},{"id":"T81","span":{"begin":247,"end":299},"obj":"Sentence"},{"id":"T82","span":{"begin":300,"end":384},"obj":"Sentence"},{"id":"T83","span":{"begin":385,"end":641},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test. 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens. 10 COVID‐19 diagnosis might require repeat testing. 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available. However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis."}