PMC:7234792 / 9945-10547 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"200","span":{"begin":278,"end":288},"obj":"Species"},{"id":"201","span":{"begin":27,"end":36},"obj":"Disease"},{"id":"202","span":{"begin":65,"end":71},"obj":"Disease"},{"id":"203","span":{"begin":187,"end":195},"obj":"Disease"},{"id":"204","span":{"begin":257,"end":266},"obj":"Disease"},{"id":"205","span":{"begin":503,"end":520},"obj":"Disease"}],"attributes":[{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Tax:2697049"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"MESH:D007239"},{"id":"A202","pred":"tao:has_database_id","subj":"202","obj":"MESH:D018805"},{"id":"A203","pred":"tao:has_database_id","subj":"203","obj":"MESH:C000657245"},{"id":"A204","pred":"tao:has_database_id","subj":"204","obj":"MESH:D007239"},{"id":"A205","pred":"tao:has_database_id","subj":"205","obj":"MESH:D055371"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T75","span":{"begin":413,"end":421},"obj":"Body_part"},{"id":"T76","span":{"begin":428,"end":433},"obj":"Body_part"},{"id":"T77","span":{"begin":509,"end":513},"obj":"Body_part"}],"attributes":[{"id":"A75","pred":"fma_id","subj":"T75","obj":"http://purl.org/sig/ont/fma/fma14542"},{"id":"A76","pred":"fma_id","subj":"T76","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A77","pred":"fma_id","subj":"T77","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T45","span":{"begin":428,"end":433},"obj":"Body_part"},{"id":"T46","span":{"begin":509,"end":513},"obj":"Body_part"}],"attributes":[{"id":"A45","pred":"uberon_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A46","pred":"uberon_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T58","span":{"begin":27,"end":36},"obj":"Disease"},{"id":"T59","span":{"begin":187,"end":195},"obj":"Disease"},{"id":"T60","span":{"begin":257,"end":266},"obj":"Disease"},{"id":"T61","span":{"begin":278,"end":286},"obj":"Disease"},{"id":"T62","span":{"begin":503,"end":520},"obj":"Disease"},{"id":"T64","span":{"begin":514,"end":520},"obj":"Disease"}],"attributes":[{"id":"A58","pred":"mondo_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A59","pred":"mondo_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A60","pred":"mondo_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A61","pred":"mondo_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A62","pred":"mondo_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A63","pred":"mondo_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/MONDO_0015796"},{"id":"A64","pred":"mondo_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/MONDO_0021178"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T133","span":{"begin":15,"end":16},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T134","span":{"begin":407,"end":409},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T135","span":{"begin":422,"end":425},"obj":"http://purl.obolibrary.org/obo/CLO_0008285"},{"id":"T136","span":{"begin":422,"end":425},"obj":"http://purl.obolibrary.org/obo/CLO_0008286"},{"id":"T137","span":{"begin":509,"end":513},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T138","span":{"begin":509,"end":513},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T86","span":{"begin":162,"end":173},"obj":"Chemical"},{"id":"T87","span":{"begin":438,"end":441},"obj":"Chemical"},{"id":"T88","span":{"begin":442,"end":455},"obj":"Chemical"}],"attributes":[{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_33281"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A88","pred":"chebi_id","subj":"T88","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T4","span":{"begin":442,"end":455},"obj":"GlycoEpitope"}],"attributes":[{"id":"A4","pred":"glyco_epitope_db_id","subj":"T4","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T35","span":{"begin":65,"end":71},"obj":"Phenotype"},{"id":"T36","span":{"begin":503,"end":520},"obj":"Phenotype"}],"attributes":[{"id":"A35","pred":"hp_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A36","pred":"hp_id","subj":"T36","obj":"http://www.orpha.net/ORDO/Orphanet_178320"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}

{"project":"LitCovid-sentences","denotations":[{"id":"T65","span":{"begin":0,"end":244},"obj":"Sentence"},{"id":"T66","span":{"begin":245,"end":602},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation."}