PMC:7234792 / 9945-10547
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 200 | 278-288 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 201 | 27-36 | Disease | denotes | infection | MESH:D007239 |
| 202 | 65-71 | Disease | denotes | sepsis | MESH:D018805 |
| 203 | 187-195 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 204 | 257-266 | Disease | denotes | infection | MESH:D007239 |
| 205 | 503-520 | Disease | denotes | acute lung injury | MESH:D055371 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T75 | 413-421 | Body_part | denotes | appendix | http://purl.org/sig/ont/fma/fma14542 |
| T76 | 428-433 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T77 | 509-513 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T45 | 428-433 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T46 | 509-513 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T58 | 27-36 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T59 | 187-195 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T60 | 257-266 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T61 | 278-286 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T62 | 503-520 | Disease | denotes | acute lung injury | http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796 |
| T64 | 514-520 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T133 | 15-16 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T134 | 407-409 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T135 | 422-425 | http://purl.obolibrary.org/obo/CLO_0008285 | denotes | p 1 |
| T136 | 422-425 | http://purl.obolibrary.org/obo/CLO_0008286 | denotes | p 1 |
| T137 | 509-513 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T138 | 509-513 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T86 | 162-173 | Chemical | denotes | antibiotics | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T87 | 438-441 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T88 | 442-455 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T4 | 442-455 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T35 | 65-71 | Phenotype | denotes | sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
| T36 | 503-520 | Phenotype | denotes | acute lung injury | http://www.orpha.net/ORDO/Orphanet_178320 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65 | 0-244 | Sentence | denotes | Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening. |
| T66 | 245-602 | Sentence | denotes | However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation. |