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PMC:7234792 / 9945-10547 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
200 278-288 Species denotes SARS-CoV-2 Tax:2697049
201 27-36 Disease denotes infection MESH:D007239
202 65-71 Disease denotes sepsis MESH:D018805
203 187-195 Disease denotes COVID-19 MESH:C000657245
204 257-266 Disease denotes infection MESH:D007239
205 503-520 Disease denotes acute lung injury MESH:D055371

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T75 413-421 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542
T76 428-433 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T77 509-513 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T45 428-433 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T46 509-513 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 27-36 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T59 187-195 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 257-266 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T61 278-286 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 503-520 Disease denotes acute lung injury http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796
T64 514-520 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T133 15-16 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 407-409 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T135 422-425 http://purl.obolibrary.org/obo/CLO_0008285 denotes p 1
T136 422-425 http://purl.obolibrary.org/obo/CLO_0008286 denotes p 1
T137 509-513 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T138 509-513 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T86 162-173 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T87 438-441 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T88 442-455 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T4 442-455 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T35 65-71 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T36 503-520 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T65 0-244 Sentence denotes Alternatively, a different infection might have caused the early sepsis presentation, with clinical improvement up to day 4 related to appropriate treatment with antibiotics, after which COVID-19 manifested on day 5, causing clinical worsening.
T66 245-602 Sentence denotes However, no infection other than SARS-CoV-2 was identified by culture, pathology, or respiratory viral panel, procalcitonin concentration was normal in the first 48 h (appendix p 1), serum and BAL galactomannan were negative, and the pathological finding of acute lung injury in the lesion was already present on day 2, which argue against this explanation.