PMC:7234792 / 731-1607 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"25","span":{"begin":278,"end":285},"obj":"Species"},{"id":"26","span":{"begin":442,"end":455},"obj":"Chemical"},{"id":"27","span":{"begin":460,"end":481},"obj":"Chemical"},{"id":"28","span":{"begin":585,"end":614},"obj":"Chemical"},{"id":"29","span":{"begin":619,"end":632},"obj":"Chemical"},{"id":"30","span":{"begin":692,"end":703},"obj":"Chemical"},{"id":"31","span":{"begin":98,"end":103},"obj":"Disease"},{"id":"32","span":{"begin":105,"end":110},"obj":"Disease"},{"id":"33","span":{"begin":116,"end":124},"obj":"Disease"}],"attributes":[{"id":"A25","pred":"tao:has_database_id","subj":"25","obj":"Tax:9606"},{"id":"A26","pred":"tao:has_database_id","subj":"26","obj":"MESH:D000068679"},{"id":"A27","pred":"tao:has_database_id","subj":"27","obj":"MESH:C442442"},{"id":"A28","pred":"tao:has_database_id","subj":"28","obj":"MESH:D000068698"},{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"MESH:D000068679"},{"id":"A30","pred":"tao:has_database_id","subj":"30","obj":"MESH:D053139"},{"id":"A31","pred":"tao:has_database_id","subj":"31","obj":"MESH:D005334"},{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"MESH:D003371"},{"id":"A33","pred":"tao:has_database_id","subj":"33","obj":"MESH:D004417"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T2","span":{"begin":486,"end":489},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma278683"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T9","span":{"begin":132,"end":141},"obj":"Disease"},{"id":"T10","span":{"begin":522,"end":524},"obj":"Disease"},{"id":"T11","span":{"begin":677,"end":686},"obj":"Disease"},{"id":"T12","span":{"begin":788,"end":797},"obj":"Disease"}],"attributes":[{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T10","span":{"begin":60,"end":62},"obj":"http://purl.obolibrary.org/obo/CLO_0009877"},{"id":"T11","span":{"begin":70,"end":71},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T12","span":{"begin":72,"end":74},"obj":"http://purl.obolibrary.org/obo/CLO_0001302"},{"id":"T13","span":{"begin":142,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T14","span":{"begin":161,"end":163},"obj":"http://purl.obolibrary.org/obo/CLO_0008192"},{"id":"T15","span":{"begin":185,"end":186},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T16","span":{"begin":377,"end":378},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T17","span":{"begin":546,"end":547},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T18","span":{"begin":638,"end":639},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T19","span":{"begin":836,"end":838},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T13","span":{"begin":60,"end":62},"obj":"Chemical"},{"id":"T14","span":{"begin":161,"end":163},"obj":"Chemical"},{"id":"T17","span":{"begin":442,"end":455},"obj":"Chemical"},{"id":"T18","span":{"begin":460,"end":481},"obj":"Chemical"},{"id":"T19","span":{"begin":460,"end":469},"obj":"Chemical"},{"id":"T22","span":{"begin":585,"end":614},"obj":"Chemical"},{"id":"T23","span":{"begin":585,"end":605},"obj":"Chemical"},{"id":"T24","span":{"begin":585,"end":594},"obj":"Chemical"},{"id":"T27","span":{"begin":606,"end":614},"obj":"Chemical"},{"id":"T28","span":{"begin":619,"end":632},"obj":"Chemical"},{"id":"T29","span":{"begin":692,"end":703},"obj":"Chemical"}],"attributes":[{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_73427"},{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_50803"},{"id":"A15","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_53793"},{"id":"A16","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_73425"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_31536"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_90926"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_134504"},{"id":"A20","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_63625"},{"id":"A21","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_63716"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_63718"},{"id":"A23","pred":"chebi_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/CHEBI_63717"},{"id":"A24","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_134504"},{"id":"A25","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_63625"},{"id":"A26","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_63716"},{"id":"A27","pred":"chebi_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/CHEBI_29806"},{"id":"A28","pred":"chebi_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/CHEBI_31536"},{"id":"A29","pred":"chebi_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/CHEBI_7798"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":98,"end":103},"obj":"Phenotype"},{"id":"T2","span":{"begin":105,"end":110},"obj":"Phenotype"},{"id":"T3","span":{"begin":116,"end":124},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0002094"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}

{"project":"LitCovid-sentences","denotations":[{"id":"T3","span":{"begin":0,"end":249},"obj":"Sentence"},{"id":"T4","span":{"begin":250,"end":273},"obj":"Sentence"},{"id":"T5","span":{"begin":274,"end":417},"obj":"Sentence"},{"id":"T6","span":{"begin":418,"end":657},"obj":"Sentence"},{"id":"T7","span":{"begin":658,"end":758},"obj":"Sentence"},{"id":"T8","span":{"begin":759,"end":876},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"14 days before admission to Mount Sinai Hospital (New York, NY, USA), a 34-year-old man developed fever, cough, and dyspnoea due to influenza A, confirmed by an NP swab 2 days later at a walk-in urgent care facility of the Mount Sinai Health System. No radiograph was done. The patient was previously healthy with no past hospitalisations, and works as an anaesthesiologist in a large medical centre in New York City. His only medication was emtricitabine and tenofovir alafenamide for HIV pre-exposure prophylaxis, which he had been taking once a day for 5 months (and prior to that, tenofovir disoproxil fumarate and emtricitabine once a day for 3 years). He was treated for influenza with oseltamivir for 5 days; symptoms resolved after 5 days of illness. He felt fully recovered from influenza, and returned to work in the hospital 11 days after his symptoms had resolved."}