PMC:7234792 / 5533-6352
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 112 | 701-711 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 113 | 651-664 | Chemical | denotes | galactomannan | MESH:C012990 |
| 114 | 112-120 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 115 | 180-192 | Disease | denotes | inflammation | MESH:D007249 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T36 | 221-237 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
| T37 | 397-401 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T38 | 434-450 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T28 | 233-237 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T29 | 397-401 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T30 | 446-450 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T25 | 112-120 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T26 | 180-192 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T27 | 701-709 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T78 | 148-155 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airways |
| T79 | 330-337 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airways |
| T80 | 397-401 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T81 | 397-401 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T82 | 486-493 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airways |
| T83 | 645-646 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T84 | 682-689 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T85 | 738-739 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T86 | 754-756 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T53 | 413-416 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T54 | 647-650 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T55 | 651-664 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
| T56 | 693-696 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T57 | 754-756 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
| T60 | 786-789 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 180-192 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
| T2 | 196-206 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretions |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T2 | 651-664 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T38 | 0-143 | Sentence | denotes | On hospital day 9, bronchoscopy was done with appropriate personal and environmental protection precautions for COVID-19, including intubation. |
| T39 | 144-207 | Sentence | denotes | The airways appeared normal without inflammation or secretions. |
| T40 | 208-381 | Sentence | denotes | The original right lower lobe opacity was targeted for biopsy, and radial endobronchial ultrasound was used to select the airways leading directly to the lesion (figure 1F). |
| T41 | 382-494 | Sentence | denotes | Transbronchial lung biopsy and BAL were done in the right lower lobe lateral segment through the target airways. |
| T42 | 495-671 | Sentence | denotes | Appropriate specimens were sent for histopathological and cytological examinations and for routine bacterial, fungal, and mycobacterial cultures, and a BAL galactomannan assay. |
| T43 | 672-819 | Sentence | denotes | Validated testing of BAL for SARS-CoV-2 was unavailable, and thus a swab used for NP specimens was swirled in the BAL specimen and sent for RT-PCR. |