PMC:7234792 / 10548-11015 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"211","span":{"begin":60,"end":69},"obj":"Disease"},{"id":"212","span":{"begin":219,"end":228},"obj":"Disease"},{"id":"213","span":{"begin":277,"end":283},"obj":"Disease"},{"id":"214","span":{"begin":359,"end":370},"obj":"Disease"},{"id":"215","span":{"begin":457,"end":466},"obj":"Disease"}],"attributes":[{"id":"A211","pred":"tao:has_database_id","subj":"211","obj":"MESH:D011014"},{"id":"A212","pred":"tao:has_database_id","subj":"212","obj":"MESH:D007239"},{"id":"A213","pred":"tao:has_database_id","subj":"213","obj":"MESH:D018805"},{"id":"A214","pred":"tao:has_database_id","subj":"214","obj":"MESH:D055370"},{"id":"A215","pred":"tao:has_database_id","subj":"215","obj":"MESH:D011014"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T78","span":{"begin":359,"end":363},"obj":"Body_part"}],"attributes":[{"id":"A78","pred":"fma_id","subj":"T78","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T47","span":{"begin":359,"end":363},"obj":"Body_part"}],"attributes":[{"id":"A47","pred":"uberon_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T65","span":{"begin":60,"end":69},"obj":"Disease"},{"id":"T66","span":{"begin":201,"end":228},"obj":"Disease"},{"id":"T67","span":{"begin":219,"end":228},"obj":"Disease"},{"id":"T68","span":{"begin":353,"end":370},"obj":"Disease"},{"id":"T70","span":{"begin":364,"end":370},"obj":"Disease"},{"id":"T71","span":{"begin":457,"end":466},"obj":"Disease"}],"attributes":[{"id":"A65","pred":"mondo_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A66","pred":"mondo_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/MONDO_0043544"},{"id":"A67","pred":"mondo_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A68","pred":"mondo_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A69","pred":"mondo_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/MONDO_0015796"},{"id":"A70","pred":"mondo_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/MONDO_0021178"},{"id":"A71","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T139","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T140","span":{"begin":49,"end":59},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T141","span":{"begin":199,"end":200},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T142","span":{"begin":359,"end":363},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T143","span":{"begin":359,"end":363},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T144","span":{"begin":384,"end":394},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T145","span":{"begin":446,"end":456},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T37","span":{"begin":60,"end":69},"obj":"Phenotype"},{"id":"T38","span":{"begin":277,"end":283},"obj":"Phenotype"},{"id":"T39","span":{"begin":353,"end":370},"obj":"Phenotype"},{"id":"T40","span":{"begin":457,"end":466},"obj":"Phenotype"}],"attributes":[{"id":"A37","pred":"hp_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A38","pred":"hp_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A39","pred":"hp_id","subj":"T39","obj":"http://www.orpha.net/ORDO/Orphanet_178320"},{"id":"A40","pred":"hp_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}

{"project":"LitCovid-sentences","denotations":[{"id":"T67","span":{"begin":0,"end":263},"obj":"Sentence"},{"id":"T68","span":{"begin":264,"end":467},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A third possible explanation is that cryptogenic organising pneumonia or similar inflammatory illness spontaneously worsened and improved over the hospitalisation, and the positive RT-PCR represents a hospital-acquired infection incidental to the hospital course. However, the sepsis-like presentation and the pathology and cytology findings showing an acute lung injury pattern with organising fibrin do not support the diagnosis of cryptogenic organising pneumonia."}