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PMC:7228307 / 11263-12161 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
213 55-60 Gene denotes FcγRI Gene:2214
214 74-78 Gene denotes IgG3 Gene:3502
215 97-109 Gene denotes interferon‐γ Gene:3458
216 212-216 Gene denotes IgG3 Gene:3502
217 361-365 Gene denotes IgG3 Gene:3502
218 382-390 Gene denotes FcγRIIIa Gene:2214
219 403-407 Gene denotes IgG3 Gene:3502
220 597-601 Gene denotes IgG3 Gene:3502
221 615-622 Gene denotes FcγRIIb Gene:2213
222 635-639 Gene denotes IgG3 Gene:3502
223 799-807 Gene denotes FcγRIIIb Gene:2215
224 274-280 Species denotes people Tax:9606
225 576-584 Gene denotes FcγRIIIb Gene:2215
226 192-199 Gene denotes FcγRIIa Gene:2212
227 556-559 Chemical denotes Phe MESH:D010649
228 473-490 Disease denotes myeloid dendritic MESH:D007635
229 740-757 Disease denotes myeloid dendritic MESH:D007635

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T90 20-23 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T91 37-41 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T92 113-122 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T93 124-135 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T94 137-148 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T95 150-164 Body_part denotes dendritic cell http://purl.org/sig/ont/fma/fma273565
T96 160-164 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T97 181-191 Body_part denotes mast cells http://purl.org/sig/ont/fma/fma66784
T98 186-191 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T99 287-297 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T100 302-311 Body_part denotes platelets http://purl.org/sig/ont/fma/fma62851
T101 325-338 Body_part denotes B lymphocytes http://purl.org/sig/ont/fma/fma62869
T102 373-381 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T103 376-381 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T104 410-418 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T105 413-418 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T106 420-431 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T107 462-471 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T108 481-496 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T109 491-496 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T110 498-509 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T111 603-614 Body_part denotes Neutrophils http://purl.org/sig/ont/fma/fma62860
T112 647-660 Body_part denotes B lymphocytes http://purl.org/sig/ont/fma/fma62869
T113 667-676 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T114 699-708 Body_part denotes basophils http://purl.org/sig/ont/fma/fma62862
T115 710-721 Body_part denotes eosinophils http://purl.org/sig/ont/fma/fma62861
T116 748-763 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T117 758-763 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T118 765-773 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T119 768-773 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T120 808-812 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T121 849-855 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T122 863-871 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T123 873-898 Body_part denotes follicular dendritic cell http://purl.org/sig/ont/fma/fma83037
T124 894-898 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 863-871 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T194 37-41 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T195 55-57 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T196 113-122 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T197 150-164 http://purl.obolibrary.org/obo/CL_0000451 denotes dendritic cell
T198 186-191 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T199 192-194 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T200 250-252 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T201 325-326 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T202 339-341 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T203 347-348 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T204 373-381 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T205 382-384 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T206 410-418 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T207 462-471 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T208 473-496 http://purl.obolibrary.org/obo/CL_0000782 denotes myeloid dendritic cells
T209 576-578 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T210 615-617 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T211 647-648 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T212 667-676 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T213 740-763 http://purl.obolibrary.org/obo/CL_0000782 denotes myeloid dendritic cells
T214 765-773 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T215 799-801 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T216 808-812 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T217 835-841 http://purl.obolibrary.org/obo/UBERON_0001005 denotes Airway
T218 849-855 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T219 849-855 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T220 849-855 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T221 849-855 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T222 863-871 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T223 863-871 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T224 884-898 http://purl.obolibrary.org/obo/CL_0000451 denotes dendritic cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T53 58-60 Chemical denotes RI http://purl.obolibrary.org/obo/CHEBI_73814|http://purl.obolibrary.org/obo/CHEBI_8753
T55 97-107 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T56 556-559 Chemical denotes Phe http://purl.obolibrary.org/obo/CHEBI_17295|http://purl.obolibrary.org/obo/CHEBI_29997

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T70 37-41 http://purl.obolibrary.org/obo/CL_0000000 denotes Cell
T71 160-164 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T72 186-191 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T73 287-297 http://purl.obolibrary.org/obo/CL_0000738 denotes leukocytes
T74 376-381 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T75 413-418 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T76 491-496 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T77 758-763 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T78 768-773 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T79 894-898 http://purl.obolibrary.org/obo/CL_0000000 denotes cell

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 556-559 Chemical denotes Phe http://purl.obolibrary.org/obo/CHEBI_17295|http://purl.obolibrary.org/obo/CHEBI_29997

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
213 55-60 Gene denotes FcγRI Gene:2214
214 74-78 Gene denotes IgG3 Gene:3502
215 97-109 Gene denotes interferon‐γ Gene:3458
216 212-216 Gene denotes IgG3 Gene:3502
217 361-365 Gene denotes IgG3 Gene:3502
218 382-390 Gene denotes FcγRIIIa Gene:2214
219 403-407 Gene denotes IgG3 Gene:3502
220 597-601 Gene denotes IgG3 Gene:3502
221 615-622 Gene denotes FcγRIIb Gene:2213
222 635-639 Gene denotes IgG3 Gene:3502
223 799-807 Gene denotes FcγRIIIb Gene:2215
224 274-280 Species denotes people Tax:9606
225 576-584 Gene denotes FcγRIIIb Gene:2215
226 192-199 Gene denotes FcγRIIa Gene:2212
227 556-559 Chemical denotes Phe MESH:D010649
228 473-490 Disease denotes myeloid dendritic MESH:D007635
229 740-757 Disease denotes myeloid dendritic MESH:D007635

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T61 0-54 Sentence denotes Receptor Affinity IgG specificity Cell distribution
T62 55-191 Sentence denotes FcγRI High IgG1, IgG3, IgG4 Induced by interferon‐γ on monocytes, neutrophils, macrophages, dendritic cell subpopulations; mast cells
T63 192-338 Sentence denotes FcγRIIa Low IgG1, IgG3, but IgG2 binding limited to the FcγRIIa‐H131 form, ~70% people) All leukocytes and platelets except T and B lymphocytes
T64 339-381 Sentence denotes FcγRIIc a Low IgG1, IgG3, IgG4 NK cells
T65 382-408 Sentence denotes FcγRIIIa Low IgG1, IgG3.
T66 410-528 Sentence denotes NK cells, macrophages, subpopulation of circulating monocytes, myeloid dendritic cells, neutrophils at very low levels
T67 529-575 Sentence denotes Binding avidity reduced by Phe at position 158
T68 576-614 Sentence denotes FcγRIIIb Low IgG1, IgG3 Neutrophils
T69 615-722 Sentence denotes FcγRIIb Low IgG1, IgG3, IgG4 B lymphocytes, some monocytes (can be upregulated); basophils; eosinophils?
T70 723-834 Sentence denotes Plasmacytoid and myeloid dendritic cells; NK cells only of individuals with FcγRIIIb gene copy number variation
T71 835-898 Sentence denotes Airway smooth muscle, LSEC, placenta, follicular dendritic cell

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 863-871 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T76 97-107 Protein denotes interferon https://www.uniprot.org/uniprot/P51527|https://www.uniprot.org/uniprot/P51526
T78 181-185 Protein denotes mast https://www.uniprot.org/uniprot/Q9NL57|https://www.uniprot.org/uniprot/Q9NBD7|https://www.uniprot.org/uniprot/A4V279
T81 842-848 Protein denotes smooth https://www.uniprot.org/uniprot/Q9VPM8|https://www.uniprot.org/uniprot/P91682|https://www.uniprot.org/uniprot/B7FNK1

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T89 20-23 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T90 37-41 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T91 113-122 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T92 124-135 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T93 137-148 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T94 150-164 Body_part denotes dendritic cell http://purl.org/sig/ont/fma/fma273565
T95 160-164 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T96 181-191 Body_part denotes mast cells http://purl.org/sig/ont/fma/fma66784
T97 186-191 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T98 287-297 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T99 302-311 Body_part denotes platelets http://purl.org/sig/ont/fma/fma62851
T100 325-338 Body_part denotes B lymphocytes http://purl.org/sig/ont/fma/fma62869
T101 373-381 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T102 376-381 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T103 410-418 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T104 413-418 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T105 420-431 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T106 462-471 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T107 481-496 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T108 491-496 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T109 498-509 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T110 603-614 Body_part denotes Neutrophils http://purl.org/sig/ont/fma/fma62860
T111 647-660 Body_part denotes B lymphocytes http://purl.org/sig/ont/fma/fma62869
T112 667-676 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T113 699-708 Body_part denotes basophils http://purl.org/sig/ont/fma/fma62862
T114 710-721 Body_part denotes eosinophils http://purl.org/sig/ont/fma/fma62861
T115 748-763 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T116 758-763 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T117 765-773 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T118 768-773 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T119 808-812 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T120 849-855 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T121 863-871 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T122 873-898 Body_part denotes follicular dendritic cell http://purl.org/sig/ont/fma/fma83037
T123 894-898 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T1 842-855 http://purl.obolibrary.org/obo/MAT_0000303 denotes smooth muscle
T2 849-855 http://purl.obolibrary.org/obo/MAT_0000025 denotes muscle
T3 863-871 http://purl.obolibrary.org/obo/MAT_0000279 denotes placenta

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T61 0-54 Sentence denotes Receptor Affinity IgG specificity Cell distribution
T62 55-191 Sentence denotes FcγRI High IgG1, IgG3, IgG4 Induced by interferon‐γ on monocytes, neutrophils, macrophages, dendritic cell subpopulations; mast cells
T63 192-338 Sentence denotes FcγRIIa Low IgG1, IgG3, but IgG2 binding limited to the FcγRIIa‐H131 form, ~70% people) All leukocytes and platelets except T and B lymphocytes
T64 339-381 Sentence denotes FcγRIIc a Low IgG1, IgG3, IgG4 NK cells
T65 382-408 Sentence denotes FcγRIIIa Low IgG1, IgG3.
T66 410-528 Sentence denotes NK cells, macrophages, subpopulation of circulating monocytes, myeloid dendritic cells, neutrophils at very low levels
T67 529-575 Sentence denotes Binding avidity reduced by Phe at position 158
T68 576-614 Sentence denotes FcγRIIIb Low IgG1, IgG3 Neutrophils
T69 615-722 Sentence denotes FcγRIIb Low IgG1, IgG3, IgG4 B lymphocytes, some monocytes (can be upregulated); basophils; eosinophils?
T70 723-834 Sentence denotes Plasmacytoid and myeloid dendritic cells; NK cells only of individuals with FcγRIIIb gene copy number variation
T71 835-898 Sentence denotes Airway smooth muscle, LSEC, placenta, follicular dendritic cell

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T1 283-286 https://glytoucan.org/Structures/Glycans/G05518TD denotes All