PMC:7219429 / 8560-9018
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T38 | 27-38 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
| T39 | 73-83 | Body_part | denotes | Glycolipid | http://purl.org/sig/ont/fma/fma82780 |
| T40 | 134-144 | Body_part | denotes | glycolipid | http://purl.org/sig/ont/fma/fma82780 |
| T41 | 252-263 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T81 | 285-293 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T82 | 331-332 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T83 | 426-434 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T111 | 27-42 | Chemical | denotes | ganglioside GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048 |
| T113 | 27-38 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T114 | 39-42 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_73110 |
| T115 | 73-83 | Chemical | denotes | Glycolipid | http://purl.obolibrary.org/obo/CHEBI_33563 |
| T116 | 134-144 | Chemical | denotes | glycolipid | http://purl.obolibrary.org/obo/CHEBI_33563 |
| T117 | 252-263 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T118 | 383-386 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
| T121 | 387-395 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T122 | 444-452 | Chemical | denotes | ceramide | http://purl.obolibrary.org/obo/CHEBI_17761|http://purl.obolibrary.org/obo/CHEBI_52639 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T4 | 39-42 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T5 | 383-386 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T66 | 0-458 | Sentence | denotes | The initial coordinates of ganglioside GM1 were obtained from CHARMM-GUI Glycolipid Modeler [24] (http://www.charmmgui.org/?doc=input/glycolipid), which uses the internal coordinate information of common glycosidic torsion angle values, orientates the ganglioside perpendicular to the membrane, and performs Langevin dynamics with a cylindrical restraint potential to keep the whole GM1 molecule cylindrical, particularly the membrane-embedded ceramide part. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 255 | 27-38 | Chemical | denotes | ganglioside | MESH:D005732 |
| 256 | 39-42 | Chemical | denotes | GM1 | MESH:D005677 |
| 257 | 252-263 | Chemical | denotes | ganglioside | MESH:D005732 |
| 258 | 383-386 | Chemical | denotes | GM1 | MESH:D005677 |
| 259 | 444-452 | Chemical | denotes | ceramide | MESH:D002518 |
| 272 | 204-228 | Disease | denotes | glycosidic torsion angle | MESH:C563601 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32405156-30525595-48151020 | 93-95 | 30525595 | denotes | 24 |
| T58286 | 93-95 | 30525595 | denotes | 24 |