PMC:7219429 / 5620-6011
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T35 | 21-28 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T29 | 4-12 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T30 | 138-140 | Disease | denotes | RS | http://purl.obolibrary.org/obo/MONDO_0010725 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T62 | 138-140 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | RS |
| T63 | 383-384 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T76 | 21-28 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T77 | 138-140 | Chemical | denotes | RS | http://purl.obolibrary.org/obo/CHEBI_73819 |
| T78 | 172-177 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T79 | 178-184 | Chemical | denotes | pentyl | http://purl.obolibrary.org/obo/CHEBI_25902 |
| T80 | 186-191 | Chemical | denotes | ethyl | http://purl.obolibrary.org/obo/CHEBI_37807|http://purl.obolibrary.org/obo/CHEBI_62801 |
| T82 | 192-197 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T83 | 198-205 | Chemical | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236 |
| T84 | 248-259 | Chemical | denotes | chloroquine | http://purl.obolibrary.org/obo/CHEBI_3638 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 375-382 | http://purl.obolibrary.org/obo/GO_0030290 | denotes | saposin |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45 | 0-105 | Sentence | denotes | The SARS-CoV-2 spike protein trimer in the prefusion conformation was obtained from pdb file # 6VSB [20]. |
| T46 | 106-206 | Sentence | denotes | Hydroxychloroquine (CLQ-OH) is (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol. |
| T47 | 207-309 | Sentence | denotes | CLQ-OH was generated by hydroxylation of chloroquine (CLQ) and validated as previously described [10]. |
| T48 | 310-391 | Sentence | denotes | CLQ was retrieved from pdb file # 4V2O (CLQ co-crystallized with saposin B) [21]. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 200 | 15-20 | Gene | denotes | spike | Gene:43740568 |
| 201 | 333-336 | Gene | denotes | pdb | Gene:5131 |
| 202 | 84-87 | Gene | denotes | pdb | Gene:5131 |
| 203 | 4-14 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 204 | 106-124 | Chemical | denotes | Hydroxychloroquine | MESH:D006886 |
| 205 | 126-132 | Chemical | denotes | CLQ-OH | |
| 206 | 137-205 | Chemical | denotes | (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol | |
| 207 | 207-213 | Chemical | denotes | CLQ-OH | |
| 208 | 248-259 | Chemical | denotes | chloroquine | MESH:D002738 |
| 209 | 261-264 | Chemical | denotes | CLQ | MESH:D002738 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32405156-32075877-48151011 | 101-103 | 32075877 | denotes | 20 |
| 32405156-26616259-48151012 | 387-389 | 26616259 | denotes | 21 |
| T51455 | 101-103 | 32075877 | denotes | 20 |
| T56339 | 387-389 | 26616259 | denotes | 21 |