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PMC:7219429 / 5620-6011 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 21-28 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T29 4-12 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 138-140 Disease denotes RS http://purl.obolibrary.org/obo/MONDO_0010725

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T62 138-140 http://purl.obolibrary.org/obo/CLO_0008882 denotes RS
T63 383-384 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T76 21-28 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T77 138-140 Chemical denotes RS http://purl.obolibrary.org/obo/CHEBI_73819
T78 172-177 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T79 178-184 Chemical denotes pentyl http://purl.obolibrary.org/obo/CHEBI_25902
T80 186-191 Chemical denotes ethyl http://purl.obolibrary.org/obo/CHEBI_37807|http://purl.obolibrary.org/obo/CHEBI_62801
T82 192-197 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T83 198-205 Chemical denotes ethanol http://purl.obolibrary.org/obo/CHEBI_16236
T84 248-259 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 375-382 http://purl.obolibrary.org/obo/GO_0030290 denotes saposin

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T45 0-105 Sentence denotes The SARS-CoV-2 spike protein trimer in the prefusion conformation was obtained from pdb file # 6VSB [20].
T46 106-206 Sentence denotes Hydroxychloroquine (CLQ-OH) is (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol.
T47 207-309 Sentence denotes CLQ-OH was generated by hydroxylation of chloroquine (CLQ) and validated as previously described [10].
T48 310-391 Sentence denotes CLQ was retrieved from pdb file # 4V2O (CLQ co-crystallized with saposin B) [21].

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
200 15-20 Gene denotes spike Gene:43740568
201 333-336 Gene denotes pdb Gene:5131
202 84-87 Gene denotes pdb Gene:5131
203 4-14 Species denotes SARS-CoV-2 Tax:2697049
204 106-124 Chemical denotes Hydroxychloroquine MESH:D006886
205 126-132 Chemical denotes CLQ-OH
206 137-205 Chemical denotes (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol
207 207-213 Chemical denotes CLQ-OH
208 248-259 Chemical denotes chloroquine MESH:D002738
209 261-264 Chemical denotes CLQ MESH:D002738

2_test

Id Subject Object Predicate Lexical cue
32405156-32075877-48151011 101-103 32075877 denotes 20
32405156-26616259-48151012 387-389 26616259 denotes 21
T51455 101-103 32075877 denotes 20
T56339 387-389 26616259 denotes 21