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PMC:7219429 / 21527-22690 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T127 100-107 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T128 120-131 Body_part denotes Ganglioside http://purl.org/sig/ont/fma/fma82816
T129 243-248 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T130 293-300 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T131 332-344 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T132 393-404 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T133 437-444 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T134 475-487 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T135 602-613 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T136 784-791 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T137 828-839 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T138 935-942 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T82 83-91 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 276-284 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 420-428 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 767-775 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T86 918-926 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T209 63-64 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T210 117-118 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T211 183-184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T212 568-573 http://purl.obolibrary.org/obo/CLO_0050605 denotes (d) 4
T213 600-601 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T396 14-17 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T397 66-69 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T398 100-107 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T399 120-131 Chemical denotes Ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T400 166-169 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T403 170-179 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T404 243-248 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T405 293-300 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T406 324-327 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T407 332-344 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T408 380-383 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T409 393-404 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T410 437-444 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T411 475-487 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T412 581-590 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T413 602-613 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T414 626-629 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T417 630-638 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T418 664-673 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T419 724-734 Chemical denotes saccharide http://purl.obolibrary.org/obo/CHEBI_16646
T420 784-791 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T421 809-812 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T424 828-839 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T425 935-942 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T426 960-963 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T427 1086-1089 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T428 1094-1097 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T24 166-169 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T25 626-629 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T26 809-812 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T27 1094-1097 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T161 0-308 Sentence denotes Fig. 8 CLQ-OH/ATM combination therapy at the molecular level. (a) ATM bound to the SARS-CoV-2 spike protein trimer. (b) Ganglioside dimer (two symmetrically arranged GM1 molecules in a typical chalice-like shape, just like the one observed in lipid raft simulations) bound to SARS-CoV-2 spike protein trimer.
T162 309-452 Sentence denotes Note that both ATM and gangliosides share the same binding region. (c) ATM prevents ganglioside binding to the SARS-CoV-2 spike protein trimer.
T163 453-620 Sentence denotes CLQ-OH, once bound to gangliosides (blue and orange surfaces), also prevents any interaction with the viral spike. (d) 4 CLQ-OH molecules bound to a ganglioside dimer.
T164 621-813 Sentence denotes Each GM1 molecule is blocked by two CLQ-OH molecules (blue and orange surfaces), which wrap around the saccharide part. (e) Detail of the 134-138 SARS-CoV-2 spike protein stretch bound to GM1.
T165 814-964 Sentence denotes Note that the ganglioside interacts with Q-134 and F-135, but not with D-138. (f) Detail of the 134-138 SARS-CoV-2 spike protein stretch bound to ATM.
T166 965-1042 Sentence denotes In this case, the binding site includes D-138 in addition to Q-134 and F-135.
T167 1043-1163 Sentence denotes Note that N-137, which interacts with both ATM and GM1, is not visible in these representations as it is located behind.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
567 929-934 Gene denotes spike Gene:43740568
568 778-783 Gene denotes spike Gene:43740568
569 561-566 Gene denotes spike Gene:43740568
570 431-436 Gene denotes spike Gene:43740568
571 287-292 Gene denotes spike Gene:43740568
572 94-99 Gene denotes spike Gene:43740568
573 83-93 Species denotes SARS-CoV-2 Tax:2697049
574 276-286 Species denotes SARS-CoV-2 Tax:2697049
575 420-430 Species denotes SARS-CoV-2 Tax:2697049
576 767-777 Species denotes SARS-CoV-2 Tax:2697049
577 918-928 Species denotes SARS-CoV-2 Tax:2697049
578 7-13 Chemical denotes CLQ-OH
579 120-131 Chemical denotes Ganglioside MESH:D005732
580 166-169 Chemical denotes GM1 MESH:D005677
581 243-248 Chemical denotes lipid MESH:D008055
582 332-344 Chemical denotes gangliosides MESH:D005732
583 393-404 Chemical denotes ganglioside MESH:D005732
584 453-459 Chemical denotes CLQ-OH
585 475-487 Chemical denotes gangliosides MESH:D005732
586 574-580 Chemical denotes CLQ-OH
587 602-613 Chemical denotes ganglioside MESH:D005732
588 626-629 Chemical denotes GM1 MESH:D005677
589 657-663 Chemical denotes CLQ-OH
590 809-812 Chemical denotes GM1 MESH:D005677
591 828-839 Chemical denotes ganglioside MESH:D005732
592 1005-1010 Chemical denotes D-138
593 1026-1031 Chemical denotes Q-134
594 1053-1058 Chemical denotes N-137 MESH:C022084
595 1094-1097 Chemical denotes GM1 MESH:D005677