PMC:7219429 / 15164-16049
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T83 | 54-61 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T84 | 144-151 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T85 | 337-344 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T86 | 518-525 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 120-123 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
| T10 | 258-261 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
| T11 | 615-618 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T52 | 37-45 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T53 | 116-119 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T55 | 127-135 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T56 | 254-257 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T58 | 451-459 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T59 | 626-629 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T151 | 79-80 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T152 | 158-159 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T153 | 271-272 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T154 | 418-419 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T155 | 532-533 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T156 | 535-536 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T157 | 644-645 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T158 | 708-709 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T159 | 804-805 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T160 | 834-835 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T252 | 54-61 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T253 | 73-76 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T254 | 99-102 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T255 | 144-151 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T256 | 307-310 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T257 | 337-344 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T258 | 518-525 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T259 | 777-780 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T260 | 853-856 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T109 | 0-239 | Sentence | denotes | Fig. 2 Molecular complex between the SARS-CoV-2 spike protein trimer and ATM. (a) Detailed view of ATM bound to the NTD tip of SARS-CoV-2 spike protein chain A, shown at two distinct magnifications and orientations (left and right panels). |
| T110 | 240-332 | Sentence | denotes | Note that the NTD tip displays a complementary landing surface for ATM (highlighted in red). |
| T111 | 333-585 | Sentence | denotes | The protein stretch 134-138, which contains the QFN triad, is highlighted in green. (b) The trimeric structure of the SARS-CoV-2 spike is represented in surface rendition with subunit (protein chain A, B and C) in cyan, yellow and purple, respectively. |
| T112 | 586-667 | Sentence | denotes | AMT (in red) is bound to the tip of the NTD domain of the A subunit (left panel). |
| T113 | 668-789 | Sentence | denotes | The ribbon structure of the cyan (chain A) subunit is shown in the right panel. (c) Above views of the spike-ATM complex. |
| T114 | 790-885 | Sentence | denotes | Note that the B and C subunits also display a fully accessible ATM binding site (red asterisk). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 379 | 138-143 | Gene | denotes | spike | Gene:43740568 |
| 380 | 771-776 | Gene | denotes | spike | Gene:43740568 |
| 381 | 48-53 | Gene | denotes | spike | Gene:43740568 |
| 382 | 804-811 | Gene | denotes | B and C | |
| 383 | 462-467 | Gene | denotes | spike | Gene:43740568 |
| 384 | 535-542 | Gene | denotes | B and C | |
| 385 | 37-47 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 386 | 127-137 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 387 | 451-461 | Species | denotes | SARS-CoV-2 | Tax:2697049 |