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PMC:7214329 / 7314-10616 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
123 439-444 Disease denotes Fever MESH:D005334
125 100-110 Species denotes SARS-CoV-2 Tax:2697049
127 1842-1847 Disease denotes Fever MESH:D005334
129 894-904 Species denotes SARS-CoV-2 Tax:2697049
134 3041-3047 Species denotes mouses Tax:10090
135 2973-2978 Chemical denotes Water MESH:D014867
136 3131-3137 Chemical denotes Oxygen MESH:D010100
137 3005-3013 Disease denotes Elevator MESH:D006973
143 2380-2384 Species denotes mice Tax:10090
144 2702-2708 Species denotes mouses Tax:10090
145 2781-2791 Species denotes SARS-CoV-2 Tax:2697049
146 2634-2639 Chemical denotes water MESH:D014867
147 2666-2674 Disease denotes elevator MESH:D006973

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T14 611-617 Body_part denotes Throat http://purl.org/sig/ont/fma/fma228738
T15 905-908 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T16 2019-2025 Body_part denotes Throat http://purl.org/sig/ont/fma/fma228738
T17 2792-2795 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 611-617 Body_part denotes Throat http://purl.obolibrary.org/obo/UBERON_0000341
T8 2019-2025 Body_part denotes Throat http://purl.obolibrary.org/obo/UBERON_0000341
T9 3147-3152 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 100-108 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 894-902 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 2781-2789 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T40 239-244 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T41 452-454 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T42 600-603 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 2
T43 1051-1056 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T44 1422-1423 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 1468-1469 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 1573-1578 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T47 1631-1633 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T48 1666-1668 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T49 1733-1737 http://purl.obolibrary.org/obo/CLO_0001360 denotes 4 12
T50 1753-1757 http://purl.obolibrary.org/obo/CLO_0001053 denotes 12 1
T51 1768-1772 http://purl.obolibrary.org/obo/CLO_0001442 denotes 6 12
T52 1909-1912 http://purl.obolibrary.org/obo/CLO_0053794 denotes 4 1
T53 1983-1986 http://purl.obolibrary.org/obo/CLO_0053794 denotes 4 1
T54 2092-2096 http://purl.obolibrary.org/obo/CLO_0001415 denotes 55 2
T55 2114-2116 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T56 2702-2708 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouses
T57 2913-2918 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T58 3041-3047 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouses
T59 3147-3152 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T60 3172-3174 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T61 3192-3195 http://purl.obolibrary.org/obo/CLO_0054055 denotes 7 1
T62 3217-3220 http://purl.obolibrary.org/obo/CLO_0054055 denotes 7 1
T63 3234-3237 http://purl.obolibrary.org/obo/CLO_0054055 denotes 7 1
T64 3294-3296 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T13 2124-2128 Chemical denotes Rest http://purl.obolibrary.org/obo/CHEBI_24433
T14 2634-2639 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T15 2973-2978 Chemical denotes Water http://purl.obolibrary.org/obo/CHEBI_15377
T16 3131-3137 Chemical denotes Oxygen http://purl.obolibrary.org/obo/CHEBI_15379

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T9 2124-2128 http://purl.obolibrary.org/obo/GO_0043336 denotes Rest

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T53 0-7 Sentence denotes Results
T54 9-20 Sentence denotes Air samples
T55 21-145 Sentence denotes Of the 44 air samples collected in medical areas, none of all was positive for SARS-CoV-2 as assessed by RT- PCR (Table 1 ).
T56 146-226 Sentence denotes Table 1 Positive rate of air samples from different departments in medical areas
T57 227-277 Sentence denotes Areas NO.of tests NO.of Positive Positive rate (%)
T58 278-311 Sentence denotes General isolation wards 13 0 0.00
T59 312-327 Sentence denotes Ward 1 3 0 0.00
T60 328-343 Sentence denotes Ward 2 3 0 0.00
T61 344-359 Sentence denotes Ward 3 1 0 0.00
T62 360-375 Sentence denotes Ward 4 2 0 0.00
T63 376-391 Sentence denotes Ward 5 3 0 0.00
T64 392-407 Sentence denotes Ward 6 1 0 0.00
T65 408-438 Sentence denotes Intensive care units 13 0 0.00
T66 439-461 Sentence denotes Fever clinic 18 0 0.00
T67 462-485 Sentence denotes Emergency room 3 0 0.00
T68 486-511 Sentence denotes Observation room 1 0 0.00
T69 512-535 Sentence denotes Treatment room 1 0 0.00
T70 536-558 Sentence denotes Infusion room 1 0 0.00
T71 559-584 Sentence denotes Diagnosis room 1 2 0 0.00
T72 585-610 Sentence denotes Diagnosis room 2 2 0 0.00
T73 611-645 Sentence denotes Throat swab sampling room 2 0 0.00
T74 646-666 Sentence denotes Public area 6 0 0.00
T75 667-682 Sentence denotes Total 44 0 0.00
T76 684-713 Sentence denotes Environmental surface samples
T77 714-813 Sentence denotes The positive rates of samples from environmental surfaces in different areas are shown in Table 2 .
T78 814-909 Sentence denotes Of the 200 swab samples taken from environmental surfaces, 38 were positive for SARS-CoV-2 RNA.
T79 910-1057 Sentence denotes Thirty-six (24.83%) of the 145 samples collected in medical areas and 2 (3.64%) of the 55 collected in living quarters were positive for the virus.
T80 1058-1158 Sentence denotes The positive rate in medical areas was significantly higher than that in living quarters (P = .001).
T81 1159-1331 Sentence denotes The positive rates were 25.00% and 37.50% for the general isolation ward and ICU, respectively, and no significant difference was observed between these regions (P = .238).
T82 1332-1480 Sentence denotes Two positive samples were detected in the office area, one was detected on the surface of a keyboard, and another was on the surface of a telephone.
T83 1481-1559 Sentence denotes Table 2 Positive rate of samples from environmental surface in different areas
T84 1560-1612 Sentence denotes Areas No. of tests No. of positive Positive rate (%)
T85 1613-1639 Sentence denotes Medical areas 145 36 24.83
T86 1640-1674 Sentence denotes General isolation ward 72 18 25.00
T87 1675-1692 Sentence denotes Ward 1 12 6 50.00
T88 1693-1709 Sentence denotes Ward 2 12 0 0.00
T89 1710-1727 Sentence denotes Ward 3 12 4 33.33
T90 1728-1745 Sentence denotes Ward 4 12 3 25.00
T91 1746-1762 Sentence denotes Ward 5 12 1 8.33
T92 1763-1780 Sentence denotes Ward 6 12 4 33.33
T93 1781-1812 Sentence denotes Intensive care units 24 9 37.50
T94 1813-1841 Sentence denotes Clinical laboratory 7 0 0.00
T95 1842-1865 Sentence denotes Fever clinic 42 9 21.43
T96 1866-1891 Sentence denotes Emergency room 12 6 50.00
T97 1892-1918 Sentence denotes Observation room 4 1 25.00
T98 1919-1942 Sentence denotes Treatment room 4 0 0.00
T99 1943-1965 Sentence denotes Infusion room 4 0 0.00
T100 1966-1992 Sentence denotes Diagnosis room 1 4 1 25.00
T101 1993-2018 Sentence denotes Diagnosis room 2 4 0 0.00
T102 2019-2053 Sentence denotes Throat swab sampling room 8 0 0.00
T103 2054-2075 Sentence denotes Public area 2 1 50.00
T104 2076-2101 Sentence denotes Living quarters 55 2 3.64
T105 2102-2123 Sentence denotes Office area 22 2 9.09
T106 2124-2143 Sentence denotes Rest room 33 0 0.00
T107 2144-2162 Sentence denotes Total 200 38 19.00
T108 2163-2282 Sentence denotes The positive rates of samples from environmental surfaces of specific sites in medical areas are presented in Table 3 .
T109 2283-2478 Sentence denotes In medical areas, the PCR-positive samples were obtained from the surface of keyboards, computer mice, beepers, bedside tables, bedrails, and medical equipment including ventilators and monitors.
T110 2479-2581 Sentence denotes In living quarters, the PCR-positive samples were obtained from the surface of telephones and desktop.
T111 2582-2796 Sentence denotes Samples taken from the surface of beepers (50.00%), water machine buttons (50.00%), elevator buttons (42.86%), computer mouses (40.00%), telephones (40.00%), and keyboards (33.33%) were positive for SARS-CoV-2 RNA.
T112 2797-2891 Sentence denotes Table 3 Positive rate of samples from environmental surface of specific sites in medical areas
T113 2892-2954 Sentence denotes Sampling site No. of tests No. of positivity Positive rate (%)
T114 2955-2972 Sentence denotes Beepers 6 3 50.00
T115 2973-3004 Sentence denotes Water machine buttons 8 4 50.00
T116 3005-3031 Sentence denotes Elevator buttons 7 3 42.86
T117 3032-3058 Sentence denotes Computer mouses 10 4 40.00
T118 3059-3080 Sentence denotes Telephones 10 4 40.00
T119 3081-3101 Sentence denotes Keyboards 15 5 33.33
T120 3102-3130 Sentence denotes Medical equipment 13 4 30.77
T121 3131-3162 Sentence denotes Oxygen cylinder valve 8 2 25.00
T122 3163-3182 Sentence denotes Desktops 18 3 16.67
T123 3183-3201 Sentence denotes Bedrails 7 1 14.29
T124 3202-3226 Sentence denotes Bedside tables 7 1 14.29
T125 3227-3243 Sentence denotes Gloves 7 1 14.29
T126 3244-3266 Sentence denotes Door handles 15 0 0.00
T127 3267-3283 Sentence denotes Others 14 1 7.14
T128 3284-3302 Sentence denotes Total 145 36 24.83

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 439-444 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T4 1842-1847 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945