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PMC:7212965 / 21863-23250 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T36 647-651 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T37 667-672 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T38 847-853 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T27 647-651 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 667-672 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 847-853 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T86 66-74 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T87 112-120 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T88 224-232 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T89 251-278 Disease denotes upper respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T90 269-278 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 533-541 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T92 957-965 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T93 1016-1024 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T94 1133-1141 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T95 1378-1386 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T163 292-293 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T164 318-322 http://purl.obolibrary.org/obo/CLO_0001044 denotes 1141
T165 427-431 http://purl.obolibrary.org/obo/CLO_0001044 denotes 1141
T166 647-651 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T167 647-651 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T168 667-672 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T169 998-1001 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T170 1171-1174 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T171 1216-1219 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T172 1256-1259 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T173 1311-1314 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T33 367-369 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T34 786-788 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T35 869-871 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T36 1082-1084 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T37 1337-1339 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T81 66-74 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T82 112-120 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T83 224-232 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T84 257-278 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T85 471-489 Phenotype denotes nausea or vomiting http://purl.obolibrary.org/obo/HP_0002017
T86 533-541 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T87 567-581 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T88 647-663 Phenotype denotes lung infiltrates http://purl.obolibrary.org/obo/HP_0002113
T89 835-843 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T90 935-951 Phenotype denotes nausea, vomiting http://purl.obolibrary.org/obo/HP_0002017
T91 957-965 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T92 1133-1141 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T93 1177-1199 Phenotype denotes nausea and/or vomiting http://purl.obolibrary.org/obo/HP_0002017
T94 1226-1240 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027

2_test

Id Subject Object Predicate Lexical cue
32407808-32213556-43469281 170-172 32213556 denotes 60
32407808-32213556-43469282 719-721 32213556 denotes 60
32407808-32213556-43469283 866-868 32213556 denotes 60

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T152 0-288 Sentence denotes In the 43 studies that informed our analysis on the prevalence of diarrhea, we extracted information on whether diarrhea was reported as the only presenting symptom.50 , 60 In only 2 studies, there was explicit reporting of diarrhea in the absence of upper respiratory infection symptoms.
T153 289-423 Sentence denotes In a study by Luo et al50 of 1141 patients, 183 patients (16%) presented with GI symptoms only in the absence of respiratory symptoms.
T154 424-602 Sentence denotes Of 1141 patients, loss of appetite (15.8%) and nausea or vomiting (11.7%) were the most common symptoms, but diarrhea was reported in 6.0% and abdominal pain in 3.9% of patients.
T155 603-693 Sentence denotes Notably, the majority of patients (96%) had lung infiltrates on chest computed tomography.
T156 694-966 Sentence denotes In the study by Jin et al60 of 651 hospitalized patients, 21 patients (3.2%) presented with GI symptoms only (and no respiratory symptoms of coughing or sputum production).60 GI symptoms were defined as at least 1 of the following symptoms: nausea, vomiting, and diarrhea.
T157 967-1261 Sentence denotes Conversely, in the US study of 116 patients with COVID-19, Cholankeril et al70 reported that 31.9% of patients had GI symptoms on admission (median duration, 1 day); diarrhea was reported in 10.3% (12 of 116), nausea and/or vomiting in 10.3% (12 of 116), and abdominal pain in 8.8% (10 of 116).
T158 1262-1387 Sentence denotes The authors explicitly reported that none of the 116 patients had isolated GI symptoms as the only manifestation of COVID-19.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
488 1337-1339 Gene denotes GI Gene:2770
489 1082-1084 Gene denotes GI Gene:2770
490 869-871 Gene denotes GI Gene:2770
491 786-788 Gene denotes GI Gene:2770
492 367-369 Gene denotes GI Gene:2770
493 323-331 Species denotes patients Tax:9606
494 337-345 Species denotes patients Tax:9606
495 432-440 Species denotes patients Tax:9606
496 593-601 Species denotes patients Tax:9606
497 628-636 Species denotes patients Tax:9606
498 742-750 Species denotes patients Tax:9606
499 755-763 Species denotes patients Tax:9606
500 1002-1010 Species denotes patients Tax:9606
501 1069-1077 Species denotes patients Tax:9606
502 1315-1323 Species denotes patients Tax:9606
503 66-74 Disease denotes diarrhea MESH:D003967
504 112-120 Disease denotes diarrhea MESH:D003967
505 224-232 Disease denotes diarrhea MESH:D003967
506 240-278 Disease denotes absence of upper respiratory infection MESH:D012141
507 402-422 Disease denotes respiratory symptoms MESH:D012818
508 442-458 Disease denotes loss of appetite MESH:D001068
509 471-477 Disease denotes nausea MESH:D009325
510 481-489 Disease denotes vomiting MESH:D014839
511 533-541 Disease denotes diarrhea MESH:D003967
512 567-581 Disease denotes abdominal pain MESH:D015746
513 811-831 Disease denotes respiratory symptoms MESH:D012818
514 835-843 Disease denotes coughing MESH:D003371
515 935-941 Disease denotes nausea MESH:D009325
516 943-951 Disease denotes vomiting MESH:D014839
517 957-965 Disease denotes diarrhea MESH:D003967
518 1016-1024 Disease denotes COVID-19 MESH:C000657245
519 1133-1141 Disease denotes diarrhea MESH:D003967
520 1177-1183 Disease denotes nausea MESH:D009325
521 1191-1199 Disease denotes vomiting MESH:D014839
522 1226-1240 Disease denotes abdominal pain MESH:D015746
523 1378-1386 Disease denotes COVID-19 MESH:C000657245