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PMC:7212965 / 18406-27967 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T31 2476-2482 Body_part denotes stools http://purl.org/sig/ont/fma/fma64183
T32 2502-2507 Body_part denotes bowel http://purl.org/sig/ont/fma/fma7199
T33 2934-2940 Body_part denotes stools http://purl.org/sig/ont/fma/fma64183
T34 2950-2955 Body_part denotes Stool http://purl.org/sig/ont/fma/fma64183
T35 3060-3070 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T36 4104-4108 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T37 4124-4129 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T38 4304-4310 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T39 7232-7237 Body_part denotes Stool http://purl.org/sig/ont/fma/fma64183
T40 7454-7459 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T41 7584-7589 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T42 7617-7620 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T43 7636-7641 Body_part denotes Stool http://purl.org/sig/ont/fma/fma64183
T44 7642-7645 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T45 7852-7855 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T46 7859-7864 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T47 8161-8166 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T48 8241-8246 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T49 8373-8378 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T50 8379-8382 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T51 8512-8517 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T52 8640-8645 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T53 8652-8655 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T54 8765-8770 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T55 8968-8973 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T56 9014-9017 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T57 9157-9162 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T58 9413-9418 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T24 2476-2482 Body_part denotes stools http://purl.obolibrary.org/obo/UBERON_0001988
T25 2934-2940 Body_part denotes stools http://purl.obolibrary.org/obo/UBERON_0001988
T26 2950-2955 Body_part denotes Stool http://purl.obolibrary.org/obo/UBERON_0001988
T27 4104-4108 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 4124-4129 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 4304-4310 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T30 7232-7237 Body_part denotes Stool http://purl.obolibrary.org/obo/UBERON_0001988
T31 7454-7459 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T32 7584-7589 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T33 7636-7641 Body_part denotes Stool http://purl.obolibrary.org/obo/UBERON_0001988
T34 7859-7864 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T35 8161-8166 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T36 8241-8246 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T37 8373-8378 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T38 8512-8517 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T39 8640-8645 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T40 8765-8770 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T41 8968-8973 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T42 9157-9162 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T43 9413-9418 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T67 48-56 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 59-67 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T69 107-115 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 472-480 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T71 646-654 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T72 910-918 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T73 1477-1485 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T74 1857-1865 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 1891-1899 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T76 2253-2261 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T77 2337-2345 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T78 2437-2445 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T79 2582-2590 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T80 2636-2644 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T81 2821-2829 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T82 2880-2888 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T83 2928-2940 Disease denotes loose stools http://purl.obolibrary.org/obo/MONDO_0001673
T84 3272-3280 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T85 3372-3380 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T86 3523-3531 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T87 3569-3577 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T88 3681-3689 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T89 3708-3735 Disease denotes upper respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T90 3726-3735 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 3990-3998 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T92 4414-4422 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T93 4473-4481 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T94 4590-4598 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T95 4835-4843 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 4846-4854 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T97 4905-4913 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 5050-5058 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T99 5080-5088 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 5183-5191 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T101 5228-5236 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T102 5418-5426 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T103 5560-5568 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T104 6395-6403 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T105 7311-7319 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T106 8074-8109 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T107 8080-8109 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T108 8147-8155 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T109 8477-8485 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T110 8607-8617 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T111 8808-8817 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T112 8945-8953 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T113 9196-9204 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T123 68-69 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T124 217-224 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T125 272-274 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T126 292-294 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T127 320-322 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T128 324-326 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T129 339-341 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T130 349-351 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T131 371-373 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T132 434-436 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T133 1112-1114 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T134 1129-1131 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T135 1147-1149 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T136 1151-1153 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T137 1161-1163 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T138 1175-1177 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T139 1196-1198 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T140 1251-1253 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T141 1427-1429 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T142 1570-1572 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T143 1583-1585 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T144 1601-1603 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T145 1605-1607 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T146 1615-1617 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T147 1630-1632 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T148 1640-1642 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T149 1653-1655 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T150 1704-1706 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T151 1786-1787 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T152 1951-1953 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T153 1964-1966 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T154 1977-1979 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T155 1981-1983 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T156 1991-1993 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T157 2006-2008 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T158 2011-2013 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T159 2024-2026 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T160 2072-2074 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T161 2267-2268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 2542-2543 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 3749-3750 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T164 3775-3779 http://purl.obolibrary.org/obo/CLO_0001044 denotes 1141
T165 3884-3888 http://purl.obolibrary.org/obo/CLO_0001044 denotes 1141
T166 4104-4108 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T167 4104-4108 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T168 4124-4129 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T169 4455-4458 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T170 4628-4631 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T171 4673-4676 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T172 4713-4716 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T173 4768-4771 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T174 5110-5111 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T175 5135-5138 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T176 5277-5278 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 5380-5381 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 5509-5510 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T179 5601-5608 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T180 5681-5683 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T181 5696-5698 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T182 5706-5708 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T183 5716-5718 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T184 5721-5723 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T185 5725-5731 http://purl.obolibrary.org/obo/CLO_0001013 denotes 46, 47
T186 5725-5731 http://purl.obolibrary.org/obo/CLO_0052464 denotes 46, 47
T187 5783-5785 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T188 5870-5871 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T189 6027-6028 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T190 6090-6097 http://purl.obolibrary.org/obo/CLO_0001013 denotes 46 , 47
T191 6090-6097 http://purl.obolibrary.org/obo/CLO_0052464 denotes 46 , 47
T192 6358-6359 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T193 6445-6452 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T194 6521-6523 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T195 6564-6566 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T196 6650-6651 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T197 6769-6770 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T198 7323-7324 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 7410-7411 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T200 7470-7471 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T201 7533-7534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T202 7611-7616 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T203 7759-7764 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T204 7997-7998 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T205 8209-8210 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T206 8297-8298 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T207 8409-8414 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T208 8550-8552 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T209 8618-8623 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T210 8633-8634 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T211 8678-8683 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T212 8778-8779 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T213 8836-8837 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T214 9124-9129 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T215 9404-9409 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T32 2384-2387 Chemical denotes Lin http://purl.obolibrary.org/obo/CHEBI_32386
T33 3824-3826 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T34 4243-4245 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T35 4326-4328 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T36 4539-4541 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T37 4794-4796 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T38 7325-7327 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T39 9075-9083 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T65 59-67 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T66 472-480 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T67 646-654 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T68 910-918 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T69 1477-1485 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T70 1891-1899 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T71 2253-2261 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T72 2337-2345 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T73 2437-2445 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T74 2469-2482 Phenotype denotes watery stools http://purl.obolibrary.org/obo/HP_0002014
T75 2582-2590 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T76 2636-2644 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T77 2821-2829 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T78 2880-2888 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T79 3272-3280 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T80 3372-3380 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T81 3523-3531 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T82 3569-3577 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T83 3681-3689 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T84 3714-3735 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T85 3928-3946 Phenotype denotes nausea or vomiting http://purl.obolibrary.org/obo/HP_0002017
T86 3990-3998 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T87 4024-4038 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T88 4104-4120 Phenotype denotes lung infiltrates http://purl.obolibrary.org/obo/HP_0002113
T89 4292-4300 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T90 4392-4408 Phenotype denotes nausea, vomiting http://purl.obolibrary.org/obo/HP_0002017
T91 4414-4422 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T92 4590-4598 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T93 4634-4656 Phenotype denotes nausea and/or vomiting http://purl.obolibrary.org/obo/HP_0002017
T94 4683-4697 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T95 4846-4854 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T96 5050-5058 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T97 5183-5191 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T98 5228-5236 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T99 5418-5426 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T100 5431-5437 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018
T101 5473-5478 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T102 5483-5490 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T103 5493-5508 Phenotype denotes Nausea/vomiting http://purl.obolibrary.org/obo/HP_0002017
T104 5653-5675 Phenotype denotes nausea and/or vomiting http://purl.obolibrary.org/obo/HP_0002017
T105 5824-5839 Phenotype denotes nausea/vomiting http://purl.obolibrary.org/obo/HP_0002017
T106 6309-6324 Phenotype denotes nausea/vomiting http://purl.obolibrary.org/obo/HP_0002017
T107 6343-6357 Phenotype denotes Abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T108 6496-6510 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T109 6605-6619 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T110 7011-7026 Phenotype denotes epigastric pain http://purl.obolibrary.org/obo/HP_0410019
T111 7032-7052 Phenotype denotes abdominal discomfort http://purl.obolibrary.org/obo/HP_0002027
T112 7113-7117 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T113 7199-7213 Phenotype denotes abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T114 7311-7319 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T115 8080-8100 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T116 8147-8155 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T117 8477-8485 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T118 9196-9204 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 160-181 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T5 168-181 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

2_test

Id Subject Object Predicate Lexical cue
32407808-32171076-43469255 264-266 32171076 denotes 20
32407808-32107577-43469256 300-302 32107577 denotes 29
32407808-32241899-43469257 383-385 32241899 denotes 55
32407808-32519944-43469258 422-424 32519944 denotes 68
32407808-32149037-43469259 426-428 32149037 denotes 69
32407808-32171076-43469260 1104-1106 32171076 denotes 20
32407808-32192580-43469261 1179-1181 32192580 denotes 46
32407808-32241899-43469262 1208-1210 32241899 denotes 55
32407808-32213556-43469263 1213-1215 32213556 denotes 60
32407808-32519944-43469264 1242-1244 32519944 denotes 68
32407808-32217556-43469265 1255-1257 32217556 denotes 72
32407808-32171076-43469266 1562-1564 32171076 denotes 20
32407808-32241899-43469267 1665-1667 32241899 denotes 55
32407808-32213556-43469268 1670-1672 32213556 denotes 60
32407808-32519944-43469269 1692-1694 32519944 denotes 68
32407808-32149037-43469270 1696-1698 32149037 denotes 69
32407808-32171076-43469271 1943-1945 32171076 denotes 20
32407808-32241899-43469272 2036-2038 32241899 denotes 55
32407808-32213556-43469273 2041-2043 32213556 denotes 60
32407808-32519944-43469274 2063-2065 32519944 denotes 68
32407808-32217556-43469275 2076-2078 32217556 denotes 72
32407808-32241899-43469276 2355-2357 32241899 denotes 55
32407808-32213556-43469277 2360-2362 32213556 denotes 60
32407808-32241899-43469278 2394-2396 32241899 denotes 55
32407808-32213556-43469279 2767-2769 32213556 denotes 60
32407808-32213556-43469280 3183-3185 32213556 denotes 60
32407808-32213556-43469281 3627-3629 32213556 denotes 60
32407808-32213556-43469282 4176-4178 32213556 denotes 60
32407808-32213556-43469283 4323-4325 32213556 denotes 60
32407808-32171076-43469284 5676-5678 32171076 denotes 20
32407808-32107577-43469285 5701-5703 32107577 denotes 29
32407808-32192580-43469286 5725-5727 32192580 denotes 46
32407808-32241899-43469287 5749-5751 32241899 denotes 55
32407808-32519944-43469288 5774-5776 32519944 denotes 68
32407808-32217556-43469289 5787-5789 32217556 denotes 72
32407808-32192580-43469290 6090-6092 32192580 denotes 46
32407808-32519944-43469291 6110-6112 32519944 denotes 68
32407808-32241899-43469292 6541-6543 32241899 denotes 55
32407808-32149037-43469293 6556-6558 32149037 denotes 69
32407808-32217556-43469294 6568-6570 32217556 denotes 72
32407808-32149037-43469295 6950-6952 32149037 denotes 69
32407808-32519944-43469296 7880-7882 32519944 denotes 68
32407808-32519944-43469297 7984-7986 32519944 denotes 68

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T135 0-57 Sentence denotes What are the Gastrointestinal Manifestations of COVID-19?
T136 59-67 Sentence denotes Diarrhea
T137 68-540 Sentence denotes A total of 43 studies including 10,676 COVID-19 patients (confirmed by laboratory real-time reverse transcription polymerase chain reaction [RT-PCR] testing) were included in the overall analysis.20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 , 37 , 38 , 41 , 42 , 45 , 47 , 49, 50, 51, 52, 53, 54, 55 , 58 , 59 , 62, 63, 64, 65, 66, 67, 68, 69, 70, 71 , 73 , 76 The pooled prevalence of diarrhea symptoms across these studies was 7.7% (95% CI, 7.2%–8.2%).
T138 541-745 Sentence denotes When analyzing by country (studies from China vs studies from other countries), the pooled prevalence of diarrhea in studies from countries other than China was much higher at 18.3% (95% CI, 16.6%–20.1%).
T139 746-867 Sentence denotes This is in comparison to studies from China, where the prevalence was much lower at 5.8% (95% CI, 5.3%–6.4%) (Figure 1 ).
T140 868-935 Sentence denotes Figure 1 Forest plot of the prevalence of diarrhea in all patients.
T141 936-1785 Sentence denotes In hospitalized patients, across 39 studies including 8,521 patients, the pooled prevalence was slightly higher at 10.4% (95% CI, 9.4%–10.7%) compared with outpatients.20, 21, 22, 23 , 25, 26, 27, 28 , 30 , 33, 34, 35 , 38 , 41 , 42 , 44, 45, 46 , 49, 50, 51, 52, 53, 54, 55 , 60 , 62, 63, 64, 65, 66, 67, 68 , 70, 71, 72, 73, 74 , 76 In 3 studies including 1701 outpatients, the pooled prevalence was 4.0% (95% CI, 3.1%–5.1%).31 , 59 , 63 As part of the sensitivity analysis, we identified 35 studies including 9717 patients that described diarrhea, and explicitly reported that it was one of the initial presenting symptoms.20, 21, 22, 23 , 26, 27, 28 , 31 , 33, 34, 35 , 38 , 41 , 42 , 44 , 45 , 47 , 48 , 50, 51, 52, 53, 54, 55 , 60 , 63, 64, 65, 66 , 68, 69, 70, 71 , 74 , 76 The pooled prevalence in these studies was 7.9% (95% CI, 7.4%–8.6%).
T142 1786-2236 Sentence denotes A total of 33 studies including 8070 patients reported on hospitalized COVID-19 patients presenting with diarrhea as one of the initial symptoms of COVID-19.20, 21, 22, 23 , 26, 27, 28 , 33, 34, 35 , 38 , 41 , 42 , 44 , 45 , 48 , 50, 51, 52, 53, 54, 55 , 60 , 63, 64, 65, 66 , 68 , 70, 71, 72, 73 , 76 The pooled prevalence was 9.3% (95% CI, 8.6%–9.9%) (Supplementary Figure 3, Supplementary Figure 4, Supplementary Figure 5, Supplementary Figure 6).
T143 2238-2261 Sentence denotes Description of diarrhea
T144 2262-2611 Sentence denotes Only a handful of studies provided any details on the type and severity of diarrhea symptoms.55 , 60 , 74 In the study by Lin et al,55 23 of 95 patients (24%) reported having diarrhea (described as loose or watery stools, ranging from 2–10 bowel movements per day); however, only a small number of patients actually had diarrhea on admission (5.2%).
T145 2612-2741 Sentence denotes Most patients developed diarrhea during the hospitalization, which may have been attributable to other treatments or medications.
T146 2742-2875 Sentence denotes In the study by Jin et al60 of 651 hospitalized patients, 8.6% of patients had diarrhea on admission before receiving any treatments.
T147 2876-2949 Sentence denotes The diarrhea symptoms were described as more than 3 loose stools per day.
T148 2950-3029 Sentence denotes Stool cultures were negative (including Clostridium difficile) in all patients.
T149 3030-3071 Sentence denotes There was no mention of fecal leukocytes.
T150 3072-3370 Sentence denotes Median duration of symptoms was 4 days (range, 1–9 days) and most patients had self-limited diarrheal symptoms.60 One additional study on 175 hospitalized patients reported that 19.4% of patients had diarrhea, with an average of 6 episodes per day, with symptom duration ranging from 1 to 4 days.74
T151 3372-3456 Sentence denotes Diarrhea as the only presenting symptom in the absence of upper respiratory symptoms
T152 3457-3745 Sentence denotes In the 43 studies that informed our analysis on the prevalence of diarrhea, we extracted information on whether diarrhea was reported as the only presenting symptom.50 , 60 In only 2 studies, there was explicit reporting of diarrhea in the absence of upper respiratory infection symptoms.
T153 3746-3880 Sentence denotes In a study by Luo et al50 of 1141 patients, 183 patients (16%) presented with GI symptoms only in the absence of respiratory symptoms.
T154 3881-4059 Sentence denotes Of 1141 patients, loss of appetite (15.8%) and nausea or vomiting (11.7%) were the most common symptoms, but diarrhea was reported in 6.0% and abdominal pain in 3.9% of patients.
T155 4060-4150 Sentence denotes Notably, the majority of patients (96%) had lung infiltrates on chest computed tomography.
T156 4151-4423 Sentence denotes In the study by Jin et al60 of 651 hospitalized patients, 21 patients (3.2%) presented with GI symptoms only (and no respiratory symptoms of coughing or sputum production).60 GI symptoms were defined as at least 1 of the following symptoms: nausea, vomiting, and diarrhea.
T157 4424-4718 Sentence denotes Conversely, in the US study of 116 patients with COVID-19, Cholankeril et al70 reported that 31.9% of patients had GI symptoms on admission (median duration, 1 day); diarrhea was reported in 10.3% (12 of 116), nausea and/or vomiting in 10.3% (12 of 116), and abdominal pain in 8.8% (10 of 116).
T158 4719-4844 Sentence denotes The authors explicitly reported that none of the 116 patients had isolated GI symptoms as the only manifestation of COVID-19.
T159 4846-4922 Sentence denotes Diarrhea as the initial presenting symptom preceding other COVID-19 symptoms
T160 4923-5106 Sentence denotes Of the studies included in our review, based on our selection framework, we identified only 1 study that reported on timing of diarrhea in relation to other COVID-19–related symptoms.
T161 5107-5273 Sentence denotes In a study by Ai et al76 of 102 hospitalized patients, 15 patients reported diarrhea symptoms on hospital admission, and diarrhea was the first symptom in 2 patients.
T162 5274-5491 Sentence denotes In a study by Wang et al77 of 138 consecutive hospitalized patients, not included in our pooled analysis, a total of 14 patients presented with diarrhea and nausea 1–2 days before the development of fever and dyspnea.
T163 5493-5508 Sentence denotes Nausea/vomiting
T164 5509-5869 Sentence denotes A total of 26 studies including 5955 patients with COVID-19 (confirmed by laboratory RT-PCR testing), were included in the overall analysis for nausea and/or vomiting.20 , 22 , 23 , 25 , 27 , 29 , 34 , 37 , 41 , 45, 46, 47 , 50 , 51 , 54 , 55 , 59 , 63 , 65 , 67 , 68 , 70, 71, 72, 73 , 76 The pooled prevalence of nausea/vomiting was 7.8% (95% CI, 7.1%–8.5%).
T165 5870-6266 Sentence denotes A subgroup analysis of 1901 patients from 7 studies (including patients from Germany, Singapore, United States, Australia, and The Netherlands) demonstrated a higher pooled prevalence of 14.9% (95% CI, 13.3%–16.6%).37 , 46 , 47 , 59 , 63 , 68 , 70 This is in comparison to the prevalence of symptoms in studies from China, which was 5.2% (95% CI, 4.4%–5.9%) (Figure 2 and Supplementary Figure 7).
T166 6267-6341 Sentence denotes Figure 2 Forest plot of the prevalence of nausea/vomiting in all patients.
T167 6343-6357 Sentence denotes Abdominal pain
T168 6358-6649 Sentence denotes A total of 15 studies including 4031 COVID-19 patients (confirmed by laboratory RT-PCR testing) were included in the overall analysis for abdominal pain.21 , 23 , 27 , 37 , 50 , 54 , 55 , 59 , 63 , 69, 70, 71, 72, 73 , 76 The pooled prevalence of abdominal pain was 3.6% (95% CI, 3.0%–4.3%).
T169 6650-7156 Sentence denotes A subgroup analysis of 1584 patients from the United States, Australia, South Korea, and The Netherlands, demonstrated a slightly higher pooled prevalence of 5.3% (95% CI, 4.2%–6.6)% compared with studies from China 2.7% (95% CI, 2.0%–3.4%), which included 10 studies of 2447 patients.37 , 59 , 63 , 69 , 70 The symptoms were variably described as stomachache, epigastric pain, and abdominal discomfort, without further details regarding the quality or nature of pain (Figure 3 and Supplementary Figure 8).
T170 7157-7230 Sentence denotes Figure 3 Forest plot of the prevalence of abdominal pain in all patients.
T171 7232-7246 Sentence denotes Stool shedding
T172 7247-7469 Sentence denotes Our study selection criteria prioritized including studies with diarrhea as a GI manifestation and avoiding overlap in populations and, therefore, did not include a comprehensive set of studies reporting on stool shedding.
T173 7470-7635 Sentence denotes A recently published systematic review by Cheung et al10 found a 48.1% (95% CI, 38.3%–59.7%) pooled prevalence of stool samples positive for virus RNA in 12 studies.
T174 7636-7765 Sentence denotes Stool RNA was positive in 70.3% of samples taken from patients after respiratory specimens were no longer positive for the virus.
T175 7766-8110 Sentence denotes From the 57 studies included in our analysis, 4 studies reported on presence of viral RNA in stool.24 , 32 , 57 , 68 Of these, 3 studies were published after the systematic review by Cheung et al.10 First, Dreher et al68 conducted a retrospective cohort study in Germany, stratifying patients by presence of acute respiratory distress syndrome.
T176 8111-8205 Sentence denotes In this study, 8 of 50 patients had diarrhea, and stool PCR was positive in 15 of 50 patients.
T177 8206-8284 Sentence denotes In a US study by Kujawski et al,57 stool PCR was positive in 7 of 10 patients.
T178 8285-8441 Sentence denotes Finally, in a case series from Germany by Wolfel et al,32 the authors not only examined stool RNA but also tried to isolate virus from laboratory specimens.
T179 8442-8737 Sentence denotes In this study, 2 of 9 patients had diarrhea as an initial symptom and stool PCR remained positive for up to 11 days, but notably, the authors were unable to isolate infectious virus, despite a high stool viral RNA load, even though the virus was successfully isolated from respiratory specimens.
T180 8738-9018 Sentence denotes The authors concluded that stool is not a primary source of spread of infection.32 Conversely, in a letter published by Wang et al,78 the authors collected 1070 specimens from 205 hospitalized patients with COVID-19 and 44 of 153 stool specimens (29%) were positive for viral RNA.
T181 9019-9205 Sentence denotes Four specimens with high copy numbers were cultured and electron microscopy was performed to detect live virus, which was observed in the stool from 2 patients who did not have diarrhea.
T182 9206-9561 Sentence denotes The authors concluded that although this does not confer infectivity, it raised the possibility of fecal–oral transmission.78 The small sample size of the reports that assessed the presence of live virus in stool combined with the conflicting findings limit our certainty in the evidence and thus the question of fecal–oral transmission remains unsettled.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
378 13-29 Gene denotes Gastrointestinal Gene:2770
379 48-56 Disease denotes COVID-19 MESH:C000657245
381 59-67 Disease denotes Diarrhea MESH:D003967
384 926-934 Species denotes patients Tax:9606
385 910-918 Disease denotes diarrhea MESH:D003967
390 116-124 Species denotes patients Tax:9606
391 107-115 Disease denotes COVID-19 MESH:C000657245
392 472-480 Disease denotes diarrhea MESH:D003967
393 646-654 Disease denotes diarrhea MESH:D003967
403 952-960 Species denotes patients Tax:9606
404 996-1004 Species denotes patients Tax:9606
405 1453-1461 Species denotes patients Tax:9606
406 1823-1831 Species denotes patients Tax:9606
407 1866-1874 Species denotes patients Tax:9606
408 1477-1485 Disease denotes diarrhea MESH:D003967
409 1857-1865 Disease denotes COVID-19 MESH:C000657245
410 1891-1899 Disease denotes diarrhea MESH:D003967
411 1934-1942 Disease denotes COVID-19 MESH:C000657245
413 2253-2261 Disease denotes diarrhea MESH:D003967
431 2406-2414 Species denotes patients Tax:9606
432 2560-2568 Species denotes patients Tax:9606
433 2617-2625 Species denotes patients Tax:9606
434 2790-2798 Species denotes patients Tax:9606
435 2808-2816 Species denotes patients Tax:9606
436 2990-3011 Species denotes Clostridium difficile Tax:1496
437 3020-3028 Species denotes patients Tax:9606
438 3138-3146 Species denotes patients Tax:9606
439 3227-3235 Species denotes patients Tax:9606
440 3259-3267 Species denotes patients Tax:9606
441 2337-2354 Disease denotes diarrhea symptoms MESH:D051271
442 2437-2445 Disease denotes diarrhea MESH:D003967
443 2582-2590 Disease denotes diarrhea MESH:D003967
444 2636-2644 Disease denotes diarrhea MESH:D003967
445 2821-2829 Disease denotes diarrhea MESH:D003967
446 2880-2897 Disease denotes diarrhea symptoms MESH:D051271
447 3272-3280 Disease denotes diarrhea MESH:D003967
450 3372-3380 Disease denotes Diarrhea MESH:D003967
451 3436-3456 Disease denotes respiratory symptoms MESH:D012818
488 4794-4796 Gene denotes GI Gene:2770
489 4539-4541 Gene denotes GI Gene:2770
490 4326-4328 Gene denotes GI Gene:2770
491 4243-4245 Gene denotes GI Gene:2770
492 3824-3826 Gene denotes GI Gene:2770
493 3780-3788 Species denotes patients Tax:9606
494 3794-3802 Species denotes patients Tax:9606
495 3889-3897 Species denotes patients Tax:9606
496 4050-4058 Species denotes patients Tax:9606
497 4085-4093 Species denotes patients Tax:9606
498 4199-4207 Species denotes patients Tax:9606
499 4212-4220 Species denotes patients Tax:9606
500 4459-4467 Species denotes patients Tax:9606
501 4526-4534 Species denotes patients Tax:9606
502 4772-4780 Species denotes patients Tax:9606
503 3523-3531 Disease denotes diarrhea MESH:D003967
504 3569-3577 Disease denotes diarrhea MESH:D003967
505 3681-3689 Disease denotes diarrhea MESH:D003967
506 3697-3735 Disease denotes absence of upper respiratory infection MESH:D012141
507 3859-3879 Disease denotes respiratory symptoms MESH:D012818
508 3899-3915 Disease denotes loss of appetite MESH:D001068
509 3928-3934 Disease denotes nausea MESH:D009325
510 3938-3946 Disease denotes vomiting MESH:D014839
511 3990-3998 Disease denotes diarrhea MESH:D003967
512 4024-4038 Disease denotes abdominal pain MESH:D015746
513 4268-4288 Disease denotes respiratory symptoms MESH:D012818
514 4292-4300 Disease denotes coughing MESH:D003371
515 4392-4398 Disease denotes nausea MESH:D009325
516 4400-4408 Disease denotes vomiting MESH:D014839
517 4414-4422 Disease denotes diarrhea MESH:D003967
518 4473-4481 Disease denotes COVID-19 MESH:C000657245
519 4590-4598 Disease denotes diarrhea MESH:D003967
520 4634-4640 Disease denotes nausea MESH:D009325
521 4648-4656 Disease denotes vomiting MESH:D014839
522 4683-4697 Disease denotes abdominal pain MESH:D015746
523 4835-4843 Disease denotes COVID-19 MESH:C000657245
526 4846-4854 Disease denotes Diarrhea MESH:D003967
527 4905-4913 Disease denotes COVID-19 MESH:C000657245
541 5152-5160 Species denotes patients Tax:9606
542 5165-5173 Species denotes patients Tax:9606
543 5264-5272 Species denotes patients Tax:9606
544 5333-5341 Species denotes patients Tax:9606
545 5394-5402 Species denotes patients Tax:9606
546 5050-5058 Disease denotes diarrhea MESH:D003967
547 5080-5088 Disease denotes COVID-19 MESH:C000657245
548 5183-5191 Disease denotes diarrhea MESH:D003967
549 5228-5236 Disease denotes diarrhea MESH:D003967
550 5418-5426 Disease denotes diarrhea MESH:D003967
551 5431-5437 Disease denotes nausea MESH:D009325
552 5473-5478 Disease denotes fever MESH:D005334
553 5483-5490 Disease denotes dyspnea MESH:D004417
556 5493-5499 Disease denotes Nausea MESH:D009325
557 5500-5508 Disease denotes vomiting MESH:D014839
561 6332-6340 Species denotes patients Tax:9606
562 6309-6315 Disease denotes nausea MESH:D009325
563 6316-6324 Disease denotes vomiting MESH:D014839
572 5546-5554 Species denotes patients Tax:9606
573 5898-5906 Species denotes patients Tax:9606
574 5933-5941 Species denotes patients Tax:9606
575 5560-5568 Disease denotes COVID-19 MESH:C000657245
576 5653-5659 Disease denotes nausea MESH:D009325
577 5667-5675 Disease denotes vomiting MESH:D014839
578 5824-5830 Disease denotes nausea MESH:D009325
579 5831-5839 Disease denotes vomiting MESH:D014839
581 6343-6357 Disease denotes Abdominal pain MESH:D015746
584 7221-7229 Species denotes patients Tax:9606
585 7199-7213 Disease denotes abdominal pain MESH:D015746
595 6404-6412 Species denotes patients Tax:9606
596 6678-6686 Species denotes patients Tax:9606
597 6926-6934 Species denotes patients Tax:9606
598 6395-6403 Disease denotes COVID-19 MESH:C000657245
599 6496-6510 Disease denotes abdominal pain MESH:D015746
600 6605-6619 Disease denotes abdominal pain MESH:D015746
601 6998-7009 Disease denotes stomachache
602 7011-7026 Disease denotes epigastric pain MESH:C537170
603 7113-7117 Disease denotes pain MESH:D010146
608 7325-7327 Gene denotes GI Gene:2770
609 7690-7698 Species denotes patients Tax:9606
610 7705-7716 Species denotes respiratory Tax:12814
611 7311-7319 Disease denotes diarrhea MESH:D003967
626 8050-8058 Species denotes patients Tax:9606
627 8134-8142 Species denotes patients Tax:9606
628 8196-8204 Species denotes patients Tax:9606
629 8275-8283 Species denotes patients Tax:9606
630 8464-8472 Species denotes patients Tax:9606
631 8931-8939 Species denotes patients Tax:9606
632 9170-9178 Species denotes patients Tax:9606
633 8715-8726 Species denotes respiratory Tax:12814
634 8074-8109 Disease denotes acute respiratory distress syndrome MESH:D012128
635 8147-8155 Disease denotes diarrhea MESH:D003967
636 8477-8485 Disease denotes diarrhea MESH:D003967
637 8808-8817 Disease denotes infection MESH:D007239
638 8945-8953 Disease denotes COVID-19 MESH:C000657245
639 9196-9204 Disease denotes diarrhea MESH:D003967