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PMC:7212949 / 5763-6501 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 24-28 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T8 187-198 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T9 255-266 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T10 331-335 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 425-436 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T12 470-479 Body_part denotes Capillary http://purl.org/sig/ont/fma/fma63194
T13 496-505 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T14 550-560 Body_part denotes arterioles http://purl.org/sig/ont/fma/fma63182
T15 584-594 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T16 608-619 Body_part denotes lymph nodes http://purl.org/sig/ont/fma/fma5034
T17 608-613 Body_part denotes lymph http://purl.org/sig/ont/fma/fma9671
T18 624-630 Body_part denotes spleen http://purl.org/sig/ont/fma/fma7196
T19 639-642 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T20 655-677 Body_part denotes type II alveolar cells http://purl.org/sig/ont/fma/fma62501
T21 672-677 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T22 692-697 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T23 714-730 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T24 725-730 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T13 24-28 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 331-335 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 470-479 Body_part denotes Capillary http://purl.obolibrary.org/obo/UBERON_0001982
T16 496-505 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T17 550-560 Body_part denotes arterioles http://purl.obolibrary.org/obo/UBERON_0001980
T18 608-619 Body_part denotes lymph nodes http://purl.obolibrary.org/obo/UBERON_0000029
T19 608-613 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T20 624-630 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T39 58-73 Disease denotes Pulmonary edema http://purl.obolibrary.org/obo/MONDO_0006932
T40 380-392 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T27 24-28 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T28 24-28 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T29 87-95 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T30 108-118 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organizing
T31 147-157 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T32 225-235 http://purl.obolibrary.org/obo/GO_0005773 denotes Vacuolated
T33 331-335 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T34 331-335 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T35 449-457 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T36 608-619 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
T37 624-630 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T38 672-677 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T39 679-697 http://purl.obolibrary.org/obo/CL_0000178 denotes interstitial cells
T40 714-724 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T41 725-730 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T42 733-734 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 737-738 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 660-662 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 96-105 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T3 380-392 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T4 458-467 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T5 575-583 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T6 575-583 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T7 575-583 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T8 575-583 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T30 58-73 Phenotype denotes Pulmonary edema http://purl.obolibrary.org/obo/HP_0100598
T31 409-421 Phenotype denotes desquamation http://purl.obolibrary.org/obo/HP_0040189

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T73 0-23 Sentence denotes Histopathology • Gross:
T74 24-42 Sentence denotes Lung consolidation
T75 43-57 Sentence denotes • Early phase:
T76 58-105 Sentence denotes Pulmonary edema with hyaline membrane formation
T77 106-125 Sentence denotes • Organizing phase:
T78 126-177 Sentence denotes Cellular fibromyxoid organizing exudates in alveoli
T79 178-222 Sentence denotes • Scanty lymphocytic interstitial infiltrate
T80 223-266 Sentence denotes • Vacuolated and multinucleated pneumocytes
T81 267-308 Sentence denotes • Viral inclusions not detected. • Gross:
T82 309-343 Sentence denotes Diffuse hemorrhage on lung surface
T83 344-467 Sentence denotes • Serous, fibrinous and hemorrhagic inflammation in alveoli with desquamation of pneumocytes and hyaline-membrane formation
T84 468-560 Sentence denotes • Capillary engorgement and capillary microthrombosis, thromboemboli in bronchial arterioles
T85 561-630 Sentence denotes • Hemorrhagic necrosis lymphocyte depletion in lymph nodes and spleen
T86 631-738 Sentence denotes • Viral RNA detected in type II alveolar cells, interstitial cells and bronchiolar epithelial cells N/A N/A

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T71 24-28 UBERON:0002048 denotes Lung
T72 58-67 UBERON:0002048 denotes Pulmonary
T73 87-95 GO:0016020;GO:0044091 denotes membrane
T74 96-105 GO:0044091 denotes formation
T75 170-177 UBERON:0003215 denotes alveoli
T76 187-198 CL:0000542 denotes lymphocytic
T77 199-211 UBERON:0005169 denotes interstitial
T78 240-254 GO:0005634;CL:0000228 denotes multinucleated
T79 255-266 CL:0000322 denotes pneumocytes
T80 275-285 GO:0016234 denotes inclusions
T81 331-335 UBERON:0002048 denotes lung
T82 396-403 UBERON:0003215 denotes alveoli
T83 425-436 CL:0000322 denotes pneumocytes
T84 449-457 GO:0016020 denotes membrane
T85 470-479 UBERON:0001982 denotes Capillary
T86 496-505 UBERON:0001982 denotes capillary
T87 506-521 GO:0007596 denotes microthrombosis
T88 540-549 UBERON:0002031 denotes bronchial
T89 550-560 UBERON:0001980 denotes arterioles
T90 584-594 CL:0000542 denotes lymphocyte
T91 608-619 UBERON:0000029 denotes lymph nodes
T92 624-630 UBERON:0002106 denotes spleen
T93 655-662 CL:0002063 denotes type II
T94 663-671 CL:0002063;UBERON:0003215 denotes alveolar
T95 672-677 CL:0002063 denotes cells
T96 679-691 UBERON:0005169 denotes interstitial
T97 702-713 UBERON:0002031 denotes bronchiolar
T98 714-724 UBERON:0000483 denotes epithelial
T497 182-187 UBERON:0000948 denotes anty
T498 243-248 CHEBI:29108;CHEBI:29108 denotes tinuc
T499 258-260 CHEBI:29103;CHEBI:29103 denotes um
T500 270-272 CHEBI:18420;CHEBI:18420 denotes ir
T501 272-274 CHEBI:62964;CHEBI:62964 denotes al
T502 365-372 UBERON:0000948 denotes nd hemo
T503 466-477 UBERON:0002349 denotes n • Capilla
T504 478-485 UBERON:0007195 denotes y engor
T505 511-518 UBERON:0000055 denotes thrombo
T506 522-533 CL:0000542 denotes thromboemb
T507 567-578 CL:0000187 denotes rrhagic nec
T508 579-584 GO:0019835 denotes osis