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PMC:7212949 / 57306-59941 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T313 363-366 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T314 516-522 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T315 547-553 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T316 723-742 Body_part denotes Corticospinal tract http://purl.org/sig/ont/fma/fma265580
T317 843-847 Body_part denotes Head http://purl.org/sig/ont/fma/fma7154
T318 916-936 Body_part denotes left temporal region http://purl.org/sig/ont/fma/fma74807
T319 999-1002 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T320 1025-1028 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T321 1072-1076 Body_part denotes Head http://purl.org/sig/ont/fma/fma7154
T322 1179-1184 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T323 1257-1271 Body_part denotes temporal lobes http://purl.org/sig/ont/fma/fma61825
T324 1296-1301 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T325 1416-1419 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T326 1465-1468 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T327 1473-1480 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T328 1528-1531 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T329 1656-1662 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T330 1746-1749 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T331 1786-1796 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T332 1801-1809 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T333 1879-1885 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T334 1920-1931 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T335 1956-1966 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T336 2414-2422 Body_part denotes Cytokine http://purl.org/sig/ont/fma/fma84050
T337 2575-2584 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T172 723-742 Body_part denotes Corticospinal tract http://purl.obolibrary.org/obo/UBERON_0002707
T173 843-847 Body_part denotes Head http://purl.obolibrary.org/obo/UBERON_0000033
T174 1072-1076 Body_part denotes Head http://purl.obolibrary.org/obo/UBERON_0000033
T175 1179-1184 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955
T176 1257-1271 Body_part denotes temporal lobes http://purl.obolibrary.org/obo/UBERON_0001871
T177 1296-1301 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T477 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T478 434-437 Disease denotes PNS http://purl.obolibrary.org/obo/MONDO_0018215
T479 563-570 Disease denotes Anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T480 670-702 Disease denotes Acute necrotizing encephalopathy http://purl.obolibrary.org/obo/MONDO_0003336
T481 688-702 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T482 1397-1403 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T484 1603-1606 Disease denotes CVA http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T486 1663-1669 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T487 1886-1892 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T488 2148-2169 Disease denotes coagulation disorders http://purl.obolibrary.org/obo/MONDO_0001531
T489 2187-2201 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T490 2317-2325 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T491 2376-2382 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T492 2439-2448 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T493 2456-2472 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T494 2559-2573 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T597 1879-1885 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T572 363-366 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T573 363-366 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T574 434-437 http://purl.obolibrary.org/obo/UBERON_0000010 denotes PNS
T575 434-437 http://www.ebi.ac.uk/efo/EFO_0000891 denotes PNS
T576 507-522 http://purl.obolibrary.org/obo/UBERON_0001134 denotes Skeletal muscle
T577 507-522 http://purl.obolibrary.org/obo/UBERON_0014892 denotes Skeletal muscle
T578 507-522 http://www.ebi.ac.uk/efo/EFO_0000888 denotes Skeletal muscle
T579 798-800 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T580 836-837 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T581 843-847 http://purl.obolibrary.org/obo/UBERON_0000033 denotes Head
T582 843-847 http://www.ebi.ac.uk/efo/EFO_0000964 denotes Head
T583 1021-1022 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T584 1047-1053 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T585 1072-1076 http://purl.obolibrary.org/obo/UBERON_0000033 denotes Head
T586 1072-1076 http://www.ebi.ac.uk/efo/EFO_0000964 denotes Head
T587 1179-1184 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T588 1179-1184 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T589 1296-1301 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T590 1296-1301 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T591 1341-1343 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T592 1647-1662 http://purl.obolibrary.org/obo/UBERON_0001134 denotes skeletal muscle
T593 1647-1662 http://purl.obolibrary.org/obo/UBERON_0014892 denotes skeletal muscle
T594 1647-1662 http://www.ebi.ac.uk/efo/EFO_0000888 denotes skeletal muscle
T595 1746-1749 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T596 1746-1749 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T598 1879-1885 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T599 1879-1885 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T600 1879-1885 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T16999 868-871 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T52268 1473-1480 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T10362 1539-1542 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T39600 1603-1606 Chemical denotes CVA http://purl.obolibrary.org/obo/CHEBI_85264

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T72 2148-2159 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T73 2456-2472 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T348 396-405 Phenotype denotes dizziness http://purl.obolibrary.org/obo/HP_0002321
T349 415-423 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T350 466-476 Phenotype denotes hypogeusia http://purl.obolibrary.org/obo/HP_0000224
T351 488-496 Phenotype denotes hyposmia http://purl.obolibrary.org/obo/HP_0004409
T352 563-570 Phenotype denotes Anosmia http://purl.obolibrary.org/obo/HP_0000458
T353 571-579 Phenotype denotes hyposmia http://purl.obolibrary.org/obo/HP_0004409
T354 627-637 Phenotype denotes hypogeusia http://purl.obolibrary.org/obo/HP_0000224
T355 670-702 Phenotype denotes Acute necrotizing encephalopathy http://purl.obolibrary.org/obo/HP_0006965
T356 705-714 Phenotype denotes Agitation http://purl.obolibrary.org/obo/HP_0000713
T357 988-996 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T358 1347-1373 Phenotype denotes Leptomeningeal enhancement http://purl.obolibrary.org/obo/HP_0032070
T359 1388-1403 Phenotype denotes Ischemic stroke http://purl.obolibrary.org/obo/HP_0002140
T360 1489-1500 Phenotype denotes Low albumin http://purl.obolibrary.org/obo/HP_0003073
T361 2187-2201 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298
T362 2414-2428 Phenotype denotes Cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T363 2559-2573 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T581 0-8 Sentence denotes COVID-19
T582 9-311 Sentence denotes Study Mao et al (2020)N = 214, confirmed casesRetrospective study Filatov et al (2020)N = 1, suspectedCase report Bagheri et al (2020)N = 10069, with olfactory dysfunctionCross-sectional Poyiadji et al (2020)N = 1, confirmed casesCase report Helms et al (2020)N = 58, confirmed casesRetrospective study
T583 312-354 Sentence denotes Clinical features • Neurological symptoms:
T584 355-360 Sentence denotes 36.4%
T585 361-376 Sentence denotes • CNS symptoms:
T586 377-431 Sentence denotes 24.8%, most common dizziness (16.8%), headache (13.1%)
T587 432-447 Sentence denotes • PNS symptoms:
T588 448-504 Sentence denotes 8.9%, most common hypogeusia (5.6%) and hyposmia (5.1%).
T589 505-532 Sentence denotes • Skeletal muscle symptoms:
T590 533-588 Sentence denotes 10.7% Altered mental status • Anosmia/hyposmia (48.23%)
T591 589-613 Sentence denotes • Sudden onset in 76.24%
T592 614-647 Sentence denotes • Associated hypogeusia in 83.38%
T593 648-659 Sentence denotes • Duration:
T594 660-720 Sentence denotes 0-30 days Acute necrotizing encephalopathy • Agitation (69%)
T595 721-754 Sentence denotes • Corticospinal tract signs (67%)
T596 755-772 Sentence denotes • Confusion (65%)
T597 773-802 Sentence denotes • Dysexecutive syndrome (36%)
T598 803-865 Sentence denotes Key findings on investigations N/A • CT Head: no acute changes
T599 866-996 Sentence denotes • EEG: bilateral slowing and focal slowing in the left temporal region with sharply countered waves, possible subclinical seizures
T600 997-1064 Sentence denotes • CSF studies: normal N/A • CSF unremarkable (not tested for COVID)
T601 1065-1139 Sentence denotes • NCCT Head: symmetric hypoattenuation within the bilateral medial thalami
T602 1140-1172 Sentence denotes • CT angiogram, venogram: normal
T603 1173-1344 Sentence denotes • MRI Brain: hemorrhagic rim enhancing lesions within the bilateral thalami, medial temporal lobes, and subinsular regions Brain MRI:• Perfusion abnormalities (100% of 11)
T604 1345-1385 Sentence denotes • Leptomeningeal enhancement (62% of 13)
T605 1386-1415 Sentence denotes • Ischemic stroke (23% of 13)
T606 1416-1453 Sentence denotes CSF (N = 7):• Oligoclonal bands (29%)
T607 1454-1486 Sentence denotes • Elevated IgG and protein (14%)
T608 1487-1506 Sentence denotes • Low albumin (57%)
T609 1507-1538 Sentence denotes • Negative RT-PCR in CSF (100%)
T610 1539-1551 Sentence denotes EEG (N = 8):
T611 1552-1563 Sentence denotes Nonspecific
T612 1564-1729 Sentence denotes Key study findings and message • Acute CVA (5.7%), impaired consciousness (14.8%), skeletal muscle injury (19.3%) more likely in severe disease (P < 0.05, P < 0.001)
T613 1730-1862 Sentence denotes • Patients with CNS symptoms more likely to have lower `lymphocyte and platelet counts and higher BUN (P < 0.05, P < 0.01, P < 0.05)
T614 1863-2014 Sentence denotes • Patients with muscle injury more likely to have higher neutrophils, CRP, D-dimer and lower lymphocyte count (P < 0.05, P < 0.001, P < 0.05, P < 0.01)
T615 2015-2325 Sentence denotes • Neurologic symptoms may be due to direct viral pathogenicity via hematogenous or retrograde neuronal spread, immunosuppression, or coagulation disorders Can present with encephalopathy acutely or during hospitalization • High correlation between reported olfactory symptoms and regional reporting of COVID-19
T616 2326-2413 Sentence denotes • Olfactory symptoms may be due to neuroepithelia injury and damage to olfactory roots.
T617 2414-2635 Sentence denotes Cytokine storm (known in influenza, other viral infections, more common in pediatrics) Mechanism unknown, may be due to critical illness–related encephalopathy, cytokines, medication-induced or direct viral pathogenicity.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1409 9-19 CHEBI:16737;CHEBI:16737 denotes Study Mao
T1410 117-125 SP_7 denotes eport Ba
T1411 176-180 UBERON:0002048 denotes tion
T1412 395-403 SP_7 denotes dizzine
T1413 495-503 SP_7 denotes a (5.1%)
T1414 698-706 GO:0031982 denotes athy • A
T1415 752-757 UBERON:0002100 denotes %) •
T1416 828-833 NCBITaxon:10239 denotes tions
T1417 888-896 SP_7 denotes ng and f
T1418 976-984 SP_7 denotes subclini
T1419 1033-1037 SP_10 denotes mark
T1420 1137-1141 SP_10 denotes mi •
T1421 1176-1184 SP_10 denotes RI Brain
T1422 1231-1240 CL:0000738 denotes bilateral
T1423 1376-1384 CL:0000775 denotes 2% of 13
T1424 1502-1510 SP_10 denotes 57%) • N
T1425 1729-1737 CL:0000233 denotes • Patie
T1426 1996-2004 SP_10 denotes < 0.05,
T1427 2006-2014 SP_9 denotes < 0.01)
T1428 2019-2027 SP_7 denotes urologic
T1429 2034-2039 SP_10 denotes ms ma

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1339 0-8 Disease denotes COVID-19 MESH:C000657245
1340 169-185 Disease denotes dysfunctionCross
1545 2317-2325 Disease denotes COVID-19 MESH:C000657245