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PMC:7212949 / 3791-11031 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 472-478 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T2 492-498 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T3 1018-1024 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T4 1327-1332 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 1758-1762 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T6 1791-1796 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T7 1996-2000 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T8 2159-2170 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T9 2227-2238 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T10 2303-2307 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 2397-2408 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T12 2442-2451 Body_part denotes Capillary http://purl.org/sig/ont/fma/fma63194
T13 2468-2477 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T14 2522-2532 Body_part denotes arterioles http://purl.org/sig/ont/fma/fma63182
T15 2556-2566 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T16 2580-2591 Body_part denotes lymph nodes http://purl.org/sig/ont/fma/fma5034
T17 2580-2585 Body_part denotes lymph http://purl.org/sig/ont/fma/fma9671
T18 2596-2602 Body_part denotes spleen http://purl.org/sig/ont/fma/fma7196
T19 2611-2614 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T20 2627-2649 Body_part denotes type II alveolar cells http://purl.org/sig/ont/fma/fma62501
T21 2644-2649 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T22 2664-2669 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T23 2686-2702 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T24 2697-2702 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T25 2934-2938 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T26 2939-2945 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T27 3552-3556 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T28 3669-3675 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T29 3722-3726 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T30 3869-3875 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T31 3903-3907 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T32 3975-3981 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T33 4061-4067 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T34 4720-4725 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T35 5127-5133 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T36 5277-5283 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T37 5491-5497 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T38 5513-5519 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T39 5758-5763 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T40 5846-5851 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T41 5911-5915 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T42 6087-6095 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T43 6219-6227 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T44 6240-6250 Body_part denotes pneumocyte http://purl.org/sig/ont/fma/fma62499
T45 6291-6316 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T46 6311-6316 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T47 6339-6344 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T48 6353-6366 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T49 6353-6358 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T50 6901-6909 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T51 6965-6970 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T52 7216-7239 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 472-478 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T7 492-498 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T8 1018-1024 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T9 1327-1332 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 1758-1762 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 1791-1796 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 1826-1830 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T13 1996-2000 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 2303-2307 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 2442-2451 Body_part denotes Capillary http://purl.obolibrary.org/obo/UBERON_0001982
T16 2468-2477 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T17 2522-2532 Body_part denotes arterioles http://purl.obolibrary.org/obo/UBERON_0001980
T18 2580-2591 Body_part denotes lymph nodes http://purl.obolibrary.org/obo/UBERON_0000029
T19 2580-2585 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T20 2596-2602 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106
T21 2934-2938 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T22 2939-2945 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T23 3552-3556 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 3669-3675 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T25 3722-3726 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T26 3869-3875 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T27 3903-3907 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 3975-3981 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T29 4061-4067 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T30 4720-4725 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T31 5127-5133 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T32 5277-5283 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T33 5491-5497 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T34 5513-5519 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T35 5758-5763 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T36 5846-5851 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T37 5911-5915 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T38 6353-6366 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T39 6353-6358 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T40 6359-6366 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T41 6965-6970 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T42 7216-7239 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T43 7222-7239 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 36-44 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 59-67 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 69-73 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 414-431 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T35 487-498 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T36 1013-1024 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T37 1452-1462 Disease denotes Leukopenia http://purl.obolibrary.org/obo/MONDO_0003785
T38 1471-1482 Disease denotes Lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T39 2030-2045 Disease denotes Pulmonary edema http://purl.obolibrary.org/obo/MONDO_0006932
T40 2352-2364 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T41 3086-3090 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T42 3215-3219 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T43 3552-3564 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T44 3664-3675 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T45 3722-3734 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T46 3864-3875 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T47 3903-3915 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T48 3970-3981 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T49 4056-4067 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T50 4169-4173 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T51 4222-4226 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T52 4735-4743 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 5044-5048 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T54 5160-5164 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T55 5230-5234 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T56 5329-5333 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T57 5389-5406 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T58 5508-5519 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T59 5576-5580 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T60 5666-5670 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T61 6259-6270 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T62 6917-6921 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T63 6923-6958 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T64 6929-6958 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T65 7154-7158 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T66 7164-7197 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T19 862-864 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T20 1026-1028 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T21 1327-1332 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T22 1749-1751 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T23 1758-1762 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T24 1758-1762 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T25 1791-1796 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T26 1911-1913 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T27 1996-2000 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T28 1996-2000 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T29 2059-2067 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T30 2080-2090 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organizing
T31 2119-2129 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T32 2197-2207 http://purl.obolibrary.org/obo/GO_0005773 denotes Vacuolated
T33 2303-2307 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T34 2303-2307 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T35 2421-2429 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T36 2580-2591 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
T37 2596-2602 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T38 2644-2649 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T39 2651-2669 http://purl.obolibrary.org/obo/CL_0000178 denotes interstitial cells
T40 2686-2696 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T41 2697-2702 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T42 2705-2706 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 2709-2710 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T44 2934-2938 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T45 2934-2938 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T46 3338-3340 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T47 3552-3556 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T48 3552-3556 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T49 3641-3643 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T50 3722-3726 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T51 3722-3726 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T52 3903-3907 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 3903-3907 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 4237-4238 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T55 4476-4477 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 4720-4725 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T57 5758-5763 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T58 5846-5851 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T59 5911-5915 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T60 5911-5915 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T61 6067-6068 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T62 6071-6072 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T63 6075-6076 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T64 6108-6118 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T65 6273-6278 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T66 6300-6310 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T67 6311-6316 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T68 6339-6344 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T69 6353-6366 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T70 6353-6366 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T71 6965-6970 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T72 6999-7007 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 806-808 Chemical denotes O2 http://purl.obolibrary.org/obo/CHEBI_15379
T2 1060-1062 Chemical denotes O2 http://purl.obolibrary.org/obo/CHEBI_15379
T3 2632-2634 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T4 3381-3383 Chemical denotes Al http://purl.obolibrary.org/obo/CHEBI_28984
T5 5199-5201 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T6 6256-6258 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T7 6534-6536 Chemical denotes O2 http://purl.obolibrary.org/obo/CHEBI_15379
T8 7132-7134 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 2068-2077 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T3 2352-2364 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T4 2430-2439 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T5 2547-2555 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T6 2547-2555 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T7 2547-2555 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T8 2547-2555 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 441-446 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T11 456-461 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T12 487-498 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T13 524-544 Phenotype denotes Inspiratory crackles http://purl.obolibrary.org/obo/HP_0031996
T14 545-550 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T15 556-563 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T16 576-592 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245
T17 634-639 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T18 648-653 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T19 750-755 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T20 764-771 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T21 895-900 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T22 944-949 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T23 970-987 Phenotype denotes pneumomediastinum http://purl.obolibrary.org/obo/HP_0025421
T24 1013-1024 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T25 1033-1052 Phenotype denotes Shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T26 1190-1195 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 1452-1462 Phenotype denotes Leukopenia http://purl.obolibrary.org/obo/HP_0001882
T28 1471-1482 Phenotype denotes Lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T29 1715-1720 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T30 2030-2045 Phenotype denotes Pulmonary edema http://purl.obolibrary.org/obo/HP_0100598
T31 2381-2393 Phenotype denotes desquamation http://purl.obolibrary.org/obo/HP_0040189
T32 2973-2978 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T33 3142-3161 Phenotype denotes Recurrence of fever http://purl.obolibrary.org/obo/HP_0001954
T34 3544-3564 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T35 3589-3594 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T36 3603-3608 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T37 3648-3655 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T38 3664-3675 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T39 3684-3694 Phenotype denotes Rhinorrhea http://purl.obolibrary.org/obo/HP_0031417
T40 3714-3734 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T41 3742-3749 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T42 3758-3763 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T43 3772-3777 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T44 3786-3794 Phenotype denotes Wheezing http://purl.obolibrary.org/obo/HP_0030828
T45 3803-3819 Phenotype denotes Productive cough http://purl.obolibrary.org/obo/HP_0031245
T46 3828-3838 Phenotype denotes Rhinorrhea http://purl.obolibrary.org/obo/HP_0031417
T47 3846-3856 Phenotype denotes Hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T48 3864-3875 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T49 3895-3915 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T50 3924-3929 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T51 3940-3945 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T52 3954-3961 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T53 3970-3981 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T54 3988-3998 Phenotype denotes Rhinorrhea http://purl.obolibrary.org/obo/HP_0031417
T55 4006-4011 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T56 4021-4030 Phenotype denotes Tachypnea http://purl.obolibrary.org/obo/HP_0002789
T57 4040-4045 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T58 4056-4067 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T59 4078-4086 Phenotype denotes Crackles http://purl.obolibrary.org/obo/HP_0030830
T60 4096-4103 Phenotype denotes Rhonchi http://purl.obolibrary.org/obo/HP_0030831
T61 4431-4438 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T62 5044-5048 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T63 5056-5061 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T64 5068-5077 Phenotype denotes Dry cough http://purl.obolibrary.org/obo/HP_0031246
T65 5086-5093 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T66 5142-5152 Phenotype denotes Hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T67 5230-5234 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T68 5244-5249 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T69 5258-5267 Phenotype denotes Dry cough http://purl.obolibrary.org/obo/HP_0031246
T70 5294-5301 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T71 5416-5421 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T72 5475-5480 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T73 5508-5519 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T74 5530-5546 Phenotype denotes Nasal congestion http://purl.obolibrary.org/obo/HP_0001742
T75 5556-5566 Phenotype denotes Hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T76 5650-5655 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T77 5658-5663 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T78 6079-6102 Phenotype denotes Diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T79 6700-6707 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T80 6712-6720 Phenotype denotes anorexia http://purl.obolibrary.org/obo/HP_0002039
T81 6893-6916 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T82 6929-6949 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T29 0-68 Sentence denotes Table 1 Pulmonary manifestations of SARS-CoV, MERS-CoV and COVID-19.
T30 69-125 Sentence denotes SARS (only studies with large study population included)
T31 126-373 Sentence denotes Study Lee et al (2003)N = 138, confirmed casesRetrospective study Lang et al (2003)N = 3, confirmed casesClinicopathologic study Liu et al (2004)N = 53, confirmed casesRetrospective study Peiris et al (2003)N = 75, confirmed casesProspective study
T32 374-438 Sentence denotes Clinical features • Preexisting chronic pulmonary disease (2.1%)
T33 439-453 Sentence denotes • Fever (100%)
T34 454-469 Sentence denotes • Cough (57.3%)
T35 470-484 Sentence denotes • Sputum (29%)
T36 485-521 Sentence denotes • Sore throat (23.2%) Coryza (22.5%)
T37 522-645 Sentence denotes • Inspiratory crackles Fever (3/3)Dyspnea (3/3)Mildly productive cough (1/3)Death within 9-15 days of illness • Fever (98%)
T38 646-728 Sentence denotes • Cough (68% on admission to isolation, 74% after hospitalization, 26% productive)
T39 729-761 Sentence denotes 4.5 ± 1.9 days after fever onset
T40 762-803 Sentence denotes • Dyspnea (40% on admission to isolation)
T41 804-941 Sentence denotes • O2 saturation <90% on room air (51% on hospitalization, 11% on admission to isolation) • Fever (100%), recurred in 85% at mean 8.9 days
T42 942-955 Sentence denotes • Cough (29%)
T43 956-1010 Sentence denotes • Spontaneous pneumomediastinum (12%) during follow-up
T44 1011-1030 Sentence denotes • Sore throat (11%)
T45 1031-1057 Sentence denotes • Shortness of breath (4%)
T46 1058-1129 Sentence denotes • O2 saturation < 90% on room air (44mean 9.1 days after symptom onset)
T47 1130-1219 Sentence denotes Key findings on investigations CXR• Consolidation (78.3% at fever onset, eventually 100%)
T48 1220-1245 Sentence denotes • 54.6% unilateral, focal
T49 1246-1277 Sentence denotes • 45.4% multifocal or bilateral
T50 1278-1307 Sentence denotes • Peripheral zone predominant
T51 1308-1400 Sentence denotes CT• Progression of chest CT infiltrates 7-10 days after admission, resolution with treatment
T52 1401-1468 Sentence denotes • lll-defined peripheral GGO, usually subpleural • Leukopenia (2/3)
T53 1469-1488 Sentence denotes • Lymphopenia (2/3)
T54 1489-1495 Sentence denotes • CXR:
T55 1496-1577 Sentence denotes Bilateral interstitial infiltrates • Abnormal CXR (59% on admission, 98% anytime)
T56 1578-1639 Sentence denotes • 63% patients – first unifocal infiltrates at 4.5 ± 2.1 days
T57 1640-1748 Sentence denotes • 37% patients - started as multifocal infiltrates at 5.8 ± 1.3 days after fever onset Initial CXR abnormal:
T58 1749-1768 Sentence denotes 71%• One lung zone:
T59 1769-1772 Sentence denotes 49%
T60 1773-1786 Sentence denotes • Multizonal:
T61 1787-1790 Sentence denotes 21%
T62 1791-1831 Sentence denotes Chest CT abnormal (55% of 33)• One lobe:
T63 1832-1835 Sentence denotes 55%
T64 1836-1849 Sentence denotes • Multilobar:
T65 1850-1853 Sentence denotes 46%
T66 1854-1889 Sentence denotes • Focal ground-glass opacification:
T67 1890-1893 Sentence denotes 24%
T68 1894-1910 Sentence denotes • Consolidation:
T69 1911-1914 Sentence denotes 36%
T70 1915-1922 Sentence denotes • Both:
T71 1923-1926 Sentence denotes 39%
T72 1927-1971 Sentence denotes Radiologic worsening in 80% at mean 7.4 days
T73 1972-1995 Sentence denotes Histopathology • Gross:
T74 1996-2014 Sentence denotes Lung consolidation
T75 2015-2029 Sentence denotes • Early phase:
T76 2030-2077 Sentence denotes Pulmonary edema with hyaline membrane formation
T77 2078-2097 Sentence denotes • Organizing phase:
T78 2098-2149 Sentence denotes Cellular fibromyxoid organizing exudates in alveoli
T79 2150-2194 Sentence denotes • Scanty lymphocytic interstitial infiltrate
T80 2195-2238 Sentence denotes • Vacuolated and multinucleated pneumocytes
T81 2239-2280 Sentence denotes • Viral inclusions not detected. • Gross:
T82 2281-2315 Sentence denotes Diffuse hemorrhage on lung surface
T83 2316-2439 Sentence denotes • Serous, fibrinous and hemorrhagic inflammation in alveoli with desquamation of pneumocytes and hyaline-membrane formation
T84 2440-2532 Sentence denotes • Capillary engorgement and capillary microthrombosis, thromboemboli in bronchial arterioles
T85 2533-2602 Sentence denotes • Hemorrhagic necrosis lymphocyte depletion in lymph nodes and spleen
T86 2603-2710 Sentence denotes • Viral RNA detected in type II alveolar cells, interstitial cells and bronchiolar epithelial cells N/A N/A
T87 2711-2780 Sentence denotes Key study findings and message • 23.2% ICU admission, at day 6 (mean)
T88 2781-2816 Sentence denotes • 13.8% mechanical ventilation rate
T89 2817-2844 Sentence denotes • 3.6% crude mortality rate
T90 2845-3011 Sentence denotes • ICU patients more likely to be of older age (P = 0.009) Severe immunological damage to lung tissue causes clinical features • Fever most common and earliest symptom
T91 3012-3090 Sentence denotes • 23% mechanical ventilation rate • 83.33% of patients with GGO developed ARDS
T92 3091-3119 Sentence denotes • 20% mechanical ventilation
T93 3120-3139 Sentence denotes • 17% ICU admission
T94 3140-3237 Sentence denotes • Recurrence of fever (univariate) and age (multivariate) risk factors for ARDS and ICU admission
T95 3238-3242 Sentence denotes MERS
T96 3243-3511 Sentence denotes Study Assiri et al (2013)N = 47, confirmed casesRetrospective study Arabi et al (2014)N = 12, (11 confirmed cases, 1 probable)Case series Al-Abdley et al (2019)N = 33, confirmed casesRetrospective study Almekhlafi et al (2016)N = 31, confirmed casesRetrospective study
T97 3512-3570 Sentence denotes Clinical features • Preexisting chronic lung disease (26%)
T98 3571-3586 Sentence denotes • Smokers (23%)
T99 3587-3600 Sentence denotes • Fever (98%)
T100 3601-3614 Sentence denotes • Cough (83%)
T101 3615-3626 Sentence denotes • Dry (47%)
T102 3627-3645 Sentence denotes • Productive (36%)
T103 3646-3661 Sentence denotes • Dyspnea (72%)
T104 3662-3681 Sentence denotes • Sore throat (21%)
T105 3682-3739 Sentence denotes • Rhinorrhea (4%) • Preexisting chronic lung disease (8%)
T106 3740-3755 Sentence denotes • Dyspnea (92%)
T107 3756-3769 Sentence denotes • Cough (83%)
T108 3770-3783 Sentence denotes • Fever (67%)
T109 3784-3800 Sentence denotes • Wheezing (17%)
T110 3801-3825 Sentence denotes • Productive cough (17%)
T111 3826-3843 Sentence denotes • Rhinorrhea (8%)
T112 3844-3861 Sentence denotes • Hemoptysis (8%)
T113 3862-3921 Sentence denotes • Sore throat (8%) • Preexisting chronic lung disease (12%)
T114 3922-3937 Sentence denotes • Fever (75.7%)
T115 3938-3951 Sentence denotes • Cough (72%)
T116 3952-3967 Sentence denotes • Dyspnea (59%)
T117 3968-3987 Sentence denotes • Sore throat (12%)
T118 3988-4018 Sentence denotes Rhinorrhea (9%) • Cough (100%)
T119 4019-4037 Sentence denotes • Tachypnea (100%)
T120 4038-4053 Sentence denotes • Fever (87.1%)
T121 4054-4075 Sentence denotes • Sore throat (25.8%)
T122 4076-4095 Sentence denotes • Crackles (93.5 %)
T123 4096-4112 Sentence denotes Rhonchi (32.3 %)
T124 4113-4262 Sentence denotes Key findings on investigations CXR abnormality (100%) – ARDS pattern CXR, CT: lobular to bilateral extensive ARDS pattern N/A CXR abnormality (96.4%)
T125 4263-4313 Sentence denotes Key study findings and message • 89% ICU admission
T126 4314-4342 Sentence denotes • 72% mechanical ventilation
T127 4343-4509 Sentence denotes • 60% case fatality rate 100% invasive mechanical ventilation, mean duration 100 days • Dyspnea before admission was associated with a more severe outcome (P < 0.001)
T128 4510-4619 Sentence denotes Prolonged MERS-CoV detection in URT in diabetics (P = 0.049) • 87.1 % invasive mechanical ventilation (87.1%)
T129 4620-4654 Sentence denotes • 74.2% overall ICU mortality rate
T130 4655-4734 Sentence denotes • Mortality in ICU associated with older age, severe disease and organ failure.
T131 4735-4743 Sentence denotes COVID-19
T132 4744-4997 Sentence denotes Study Huang et al (2020)N = 41, confirmed casesRetrospective study Wang et al (2020)N = 138, confirmed casesRetrospective study Guan et al (2020)N = 1099, confirmed casesRetrospective study Zhang et al (2020)N = 1, confirmed casesClinicopathologic study
T133 4998-5029 Sentence denotes Clinical features • Smoker (7%)
T134 5030-5053 Sentence denotes • Preexisting COPD (2%)
T135 5054-5065 Sentence denotes • Fever 98%
T136 5066-5083 Sentence denotes • Dry cough (76%)
T137 5084-5124 Sentence denotes • Dyspnea (55%), mean 8 days after onset
T138 5125-5139 Sentence denotes • Sputum (28%)
T139 5140-5157 Sentence denotes • Hemoptysis (5%)
T140 5158-5195 Sentence denotes • ARDS (29%), mean 9 days after onset
T141 5196-5241 Sentence denotes • ↑RR >24/min (29%) • Preexisting COPD (2.9%)
T142 5242-5255 Sentence denotes • Fever 98.6%
T143 5256-5274 Sentence denotes • Dry cough (59.4)
T144 5275-5291 Sentence denotes • Sputum (26.8%)
T145 5292-5326 Sentence denotes • Dyspnea, mean 5 days after onset
T146 5327-5413 Sentence denotes • ARDS (19.6%), mean 8 days after onset • Preexisting chronic pulmonary disease (1.1%)
T147 5414-5472 Sentence denotes • Fever (43.8% on admission, 88.7% during hospitalization)
T148 5473-5488 Sentence denotes • Cough (67.8%)
T149 5489-5505 Sentence denotes • Sputum (33.7%)
T150 5506-5527 Sentence denotes • Sore throat (13.9%)
T151 5528-5553 Sentence denotes • Nasal congestion (4.8%)
T152 5554-5573 Sentence denotes • Hemoptysis (0.9%)
T153 5574-5587 Sentence denotes • ARDS (3.4%)
T154 5588-5613 Sentence denotes • 1.4% case fatality rate
T155 5614-5655 Sentence denotes • 4 days median incubation period • Fever
T156 5656-5663 Sentence denotes • Cough
T157 5664-5717 Sentence denotes • ARDS requiring mechanical ventilation within 1 week
T158 5718-5798 Sentence denotes Key findings on investigations Abnormal chest CT (100%); (98% bilateral) • ↓PaO2
T159 5799-5834 Sentence denotes • ↓PaO2:FiO2 • Abnormal CXR (59.1%)
T160 5835-5862 Sentence denotes • Abnormal Chest CT (86.2%)
T161 5863-5905 Sentence denotes • Ground glass opacity most common (56.4%)
T162 5906-6009 Sentence denotes • No lung imaging findings in 17.9% patients with nonsevere disease and in 2.9% with severe disease CT:
T163 6010-6049 Sentence denotes Patchy bilateral ground glass opacities
T164 6050-6208 Sentence denotes Histopathology N/A N/A N/A • Diffuse alveolar damage with organizing changes of fibrous plugs, with interstitial fibrosis and chronic inflammatory infiltrates
T165 6209-6270 Sentence denotes • Denuded alveolar lining with pneumocyte type II hyperplasia
T166 6271-6366 Sentence denotes • Virus detected on alveolar epithelial cells including desquamated cells, not in blood vessels
T167 6367-6444 Sentence denotes Key study findings and message • ICU patients had more areas of consolidation
T168 6445-6506 Sentence denotes • 10% mechanical ventilation rate, mean 10.5 days after onset
T169 6507-6635 Sentence denotes • 5% ECMO rate • High-flow O2 therapy in 11.1% ICU patients, noninvasive ventilation in 41.7%, and invasive ventilation in 47.2%
T170 6636-6752 Sentence denotes • Older patients (P < 0.001), patients with more comorbidities, dyspnea and anorexia more likely to require ICU care
T171 6753-6765 Sentence denotes • Mortality:
T172 6766-6809 Sentence denotes 4.3% • Mechanical ventilation needed (6.1%)
T173 6810-6916 Sentence denotes • Radiographic abnormalities often absent Histopathologic findings consistent with diffuse alveolar damage
T174 6917-7240 Sentence denotes ARDS, acute respiratory distress syndrome; CXR, chest x-ray; ECMO, extracorporeal membrane oxygenation; GGO, ground glass opacities; ICU, intensive care unit; MERS-CoV, middle east respiratory syndrome coronavirus; RR, respiratory rate; SARS-COV, severe acute respiratory syndrome coronavirus; URT, upper respiratory tract.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T149 8-17 UBERON:0002048 denotes Pulmonary
T150 36-44 SP_10 denotes SARS-CoV
T151 46-54 SP_9 denotes MERS-CoV
T152 59-67 SP_7 denotes COVID-19
T1087 221-222 UBERON:0002113 denotes r
T1088 227-228 NCBITaxon:10239 denotes a
T1090 228-229 NCBITaxon:10239 denotes s
T1093 239-240 PR:000003622;G_3;PG_10 denotes a
T1094 240-241 PR:000003622;PG_10 denotes t
T1102 246-247 SP_9 denotes i
T1104 247-248 SP_9 denotes c
T1105 249-250 SP_10 denotes s
T1106 250-251 SP_10 denotes t
T1108 251-252 SP_10 denotes u
T1645 1280-1382 GO:0007565 denotes Peripheral zone predominant CT• Progression of chest CT infiltrates 7-10 days after admission, resolut
T1646 4797-4991 UBERON:0001987 denotes pective study Wang et al (2020)N = 138, confirmed casesRetrospective study Guan et al (2020)N = 1099, confirmed casesRetrospective study Zhang et al (2020)N = 1, confirmed casesClinicopathologic
T1647 5056-5061 UBERON:0001987 denotes Fever
T1648 5103-5105 GO:0007565 denotes an
T1649 5117-5121 DG_29 denotes r on
T1656 5369-5377 GO:0007567 denotes Preexist
T1657 5377-5378 GO:0007567 denotes i
T1658 5458-5463 SP_10 denotes spita
T1663 5496-5497 UBERON:0001913 denotes m
T1664 5513-5514 GO:0042571 denotes t
T1665 5558-5560 GO:0007596 denotes mo
T1666 5641-5647 GO:0007567;UBERON:0012101 denotes period
T1667 5648-5649 SP_10 denotes
T1668 5666-5667 GO:0007565 denotes A
T1670 5671-5680 UBERON:0001004 denotes requiring
T1671 5699-5703 GO:0042571 denotes tion
T1672 5728-5733 GO:0007565 denotes gs on
T1673 5754-5755 GO:0007596 denotes m
T1676 5951-5953 GO:0016265 denotes wi
T1677 5970-5973 UBERON:0001987 denotes ase
T1681 6123-6126 GO:0007565 denotes ges
T1682 6127-6129 UBERON:0012101 denotes of
T1684 6133-6144 GO:0006955 denotes rous plugs,
T1685 6184-6188 GO:0007567;UBERON:0012101 denotes infl
T1687 6261-6263 GO:0007565 denotes pe
T1688 6398-6403 SP_7 denotes • ICU
T1689 6420-6421 GO:0016265 denotes e
T1690 6426-6427 GO:0007567 denotes s
T1691 6470-6471 SP_7 denotes i
T1693 6545-6546 SP_7 denotes i
T1694 6610-6611 GO:0016265 denotes s
T1695 6611-6614 UBERON:0002107 denotes ive
T1698 6690-6693 UBERON:0000178 denotes bid
T1700 6726-6732 UBERON:0002107 denotes likely
T1701 6745-6747 SP_7 denotes CU
T1702 6750-6754 GO:0007565 denotes re •
T1705 6929-6940 UBERON:0001004 denotes respiratory
T1706 6950-6957 GO:0007567 denotes syndrom
T1707 7008-7019 GO:0050817 denotes oxygenation
T1712 7076-7084 SP_9 denotes MERS-CoV
T1713 7086-7097 SP_9 denotes middle east
T1714 7098-7109 SP_9;GO:0045333;UBERON:0001004 denotes respiratory
T1715 7110-7130 SP_9 denotes syndrome coronavirus
T1717 7154-7162 SP_10 denotes SARS-COV
T1718 7164-7176 SP_10 denotes severe acute
T1719 7177-7188 SP_10;UBERON:0001004 denotes respiratory
T1720 7189-7209 SP_10 denotes syndrome coronavirus
T55 36-44 SP_10 denotes SARS-CoV
T56 46-54 SP_9 denotes MERS-CoV
T57 59-67 SP_7 denotes COVID-19
T59 414-423 UBERON:0002048 denotes pulmonary
T60 472-478 UBERON:0007311 denotes Sputum
T61 492-498 UBERON:0000341 denotes throat
T62 598-603 GO:0016265 denotes Death
T63 806-808 CHEBI:15379;CHEBI:15379 denotes O2
T64 1018-1024 UBERON:0000341 denotes throat
T65 1046-1052 UBERON:0002048 denotes breath
T66 1060-1062 CHEBI:15379;CHEBI:15379 denotes O2
T67 1327-1332 UBERON:0001443 denotes chest
T68 1506-1518 UBERON:0005169 denotes interstitial
T69 1758-1762 UBERON:0002048 denotes lung
T70 1826-1830 UBERON:3010752 denotes lobe
T71 1996-2000 UBERON:0002048 denotes Lung
T72 2030-2039 UBERON:0002048 denotes Pulmonary
T73 2059-2067 GO:0016020;GO:0044091 denotes membrane
T74 2068-2077 GO:0044091 denotes formation
T75 2142-2149 UBERON:0003215 denotes alveoli
T76 2159-2170 CL:0000542 denotes lymphocytic
T77 2171-2183 UBERON:0005169 denotes interstitial
T78 2212-2226 GO:0005634;CL:0000228 denotes multinucleated
T79 2227-2238 CL:0000322 denotes pneumocytes
T80 2247-2257 GO:0016234 denotes inclusions
T81 2303-2307 UBERON:0002048 denotes lung
T82 2368-2375 UBERON:0003215 denotes alveoli
T83 2397-2408 CL:0000322 denotes pneumocytes
T84 2421-2429 GO:0016020 denotes membrane
T85 2442-2451 UBERON:0001982 denotes Capillary
T86 2468-2477 UBERON:0001982 denotes capillary
T87 2478-2493 GO:0007596 denotes microthrombosis
T88 2512-2521 UBERON:0002031 denotes bronchial
T89 2522-2532 UBERON:0001980 denotes arterioles
T90 2556-2566 CL:0000542 denotes lymphocyte
T91 2580-2591 UBERON:0000029 denotes lymph nodes
T92 2596-2602 UBERON:0002106 denotes spleen
T93 2627-2634 CL:0002063 denotes type II
T94 2635-2643 CL:0002063;UBERON:0003215 denotes alveolar
T95 2644-2649 CL:0002063 denotes cells
T96 2651-2663 UBERON:0005169 denotes interstitial
T97 2674-2685 UBERON:0002031 denotes bronchiolar
T98 2686-2696 UBERON:0000483 denotes epithelial
T99 2734-2741 CHEBI:33695;CHEBI:33695 denotes message
T100 2934-2938 UBERON:0002048 denotes lung
T101 2939-2945 UBERON:0000479 denotes tissue
T102 3552-3556 UBERON:0002048 denotes lung
T103 3669-3675 UBERON:0000341 denotes throat
T104 3722-3726 UBERON:0002048 denotes lung
T105 3869-3875 UBERON:0000341 denotes throat
T106 3903-3907 UBERON:0002048 denotes lung
T107 3975-3981 UBERON:0000341 denotes throat
T108 4061-4067 UBERON:0000341 denotes throat
T109 4191-4198 UBERON:0009911 denotes lobular
T110 4286-4293 CHEBI:33695;CHEBI:33695 denotes message
T111 4520-4528 SP_9 denotes MERS-CoV
T112 4720-4725 UBERON:0000062 denotes organ
T113 4735-4755 SP_7 denotes COVID-19 Study Huang
T114 5044-5048 PR:000004197 denotes COPD
T115 5127-5133 UBERON:0007311 denotes Sputum
T116 5277-5283 UBERON:0007311 denotes Sputum
T117 5389-5398 UBERON:0002048 denotes pulmonary
T118 5491-5497 UBERON:0007311 denotes Sputum
T119 5513-5519 UBERON:0000341 denotes throat
T120 5530-5535 UBERON:0000004 denotes Nasal
T121 5758-5763 UBERON:0001443 denotes chest
T122 5911-5915 UBERON:0002048 denotes lung
T123 6087-6095 UBERON:0003215 denotes alveolar
T124 6138-6143 UBERON:0010148 denotes plugs
T125 6150-6162 UBERON:0005169 denotes interstitial
T126 6219-6227 UBERON:0003215 denotes alveolar
T127 6240-6250 CL:0000322 denotes pneumocyte
T128 6291-6299 UBERON:0003215;CL:0000322 denotes alveolar
T129 6300-6310 CL:0000322;UBERON:0000483 denotes epithelial
T130 6311-6316 CL:0000322 denotes cells
T131 6353-6358 UBERON:0000178 denotes blood
T132 6359-6370 UBERON:0001981 denotes vessels Key
T133 6390-6397 CHEBI:33695;CHEBI:33695 denotes message
T134 6534-6536 CHEBI:15379;CHEBI:15379 denotes O2
T135 6901-6909 UBERON:0003215 denotes alveolar
T136 6929-6940 UBERON:0001004 denotes respiratory
T137 6965-6970 UBERON:0001443 denotes chest
T138 7008-7019 GO:0015671 denotes oxygenation
T139 7076-7084 SP_9 denotes MERS-CoV
T140 7086-7097 SP_9 denotes middle east
T141 7098-7109 SP_9;UBERON:0001004 denotes respiratory
T142 7110-7130 SP_9 denotes syndrome coronavirus
T143 7136-7147 GO:0045333 denotes respiratory
T144 7154-7162 SP_10 denotes SARS-COV
T145 7164-7176 SP_10 denotes severe acute
T146 7177-7188 SP_10;UBERON:0001004 denotes respiratory
T147 7189-7209 SP_10 denotes syndrome coronavirus
T148 7216-7239 UBERON:0001557 denotes upper respiratory tract
T463 347-354 UBERON:0000948 denotes med cas
T464 534-541 UBERON:0000948 denotes y crack
T465 719-724 UBERON:0000948 denotes oduct
T466 851-854 PR:000013333 denotes ali
T467 877-887 GO:0001750 denotes n to isola
T468 908-915 UBERON:0000948 denotes recurr
T469 959-966 CHEBI:33695;CHEBI:33695 denotes pontane
T470 1096-1103 UBERON:0000948 denotes ean 9.1
T471 1144-1151 UBERON:0000948 denotes n inves
T472 1160-1165 G_3;PG_10 denotes CXR•
T473 1244-1254 UBERON:0001004 denotes l • 45.4%
T474 1331-1336 UBERON:0000948 denotes t CT
T475 1419-1424 UBERON:0000178 denotes phera
T476 1439-1444 UBERON:0000948 denotes subpl
T477 1467-1472 UBERON:0000948 denotes ) • L
T478 1525-1535 UBERON:0002349 denotes rates • Ab
T479 1547-1552 UBERON:0001443 denotes 59% o
T480 1590-1601 GO:0015671 denotes ts – first
T481 1650-1657 CHEBI:24996;CHEBI:24996 denotes ents -
T482 1674-1678 UBERON:0002084 denotes ocal
T483 1680-1705 UBERON:0002084 denotes nfiltrates at 5.8 ± 1.3 d
T484 1720-1730 UBERON:0002349 denotes onset Ini
T485 1743-1751 SP_9 denotes rmal: 71
T486 1753-1764 SP_9 denotes One lung z
T487 1765-1775 SP_9;UBERON:0001004;GO:0045333 denotes ne: 49% •
T488 1777-1797 SP_9 denotes ltizonal: 21% Chest
T489 1832-1841 SP_10 denotes 55% • Mul
T490 1843-1855 SP_10 denotes lobar: 46% •
T491 1856-1866 SP_10;UBERON:0001004 denotes Focal grou
T492 1867-1887 SP_10 denotes d-glass opacificatio
T493 1914-1928 UBERON:0004535 denotes • Both: 39% R
T494 1947-1955 SP_10 denotes in 80%
T495 1957-1965 SP_9 denotes mean 7.
T496 1970-1978 SP_7 denotes s Histop
T497 2154-2159 UBERON:0000948 denotes anty
T498 2215-2220 CHEBI:29108;CHEBI:29108 denotes tinuc
T499 2230-2232 CHEBI:29103;CHEBI:29103 denotes um
T500 2242-2244 CHEBI:18420;CHEBI:18420 denotes ir
T501 2244-2246 CHEBI:62964;CHEBI:62964 denotes al
T502 2337-2344 UBERON:0000948 denotes nd hemo
T503 2438-2449 UBERON:0002349 denotes n • Capilla
T504 2450-2457 UBERON:0007195 denotes y engor
T505 2483-2490 UBERON:0000055 denotes thrombo
T506 2494-2505 CL:0000542 denotes thromboemb
T507 2539-2550 CL:0000187 denotes rrhagic nec
T508 2551-2556 GO:0019835 denotes osis
T509 2719-2729 UBERON:0002349 denotes y findings
T510 2746-2751 NCBITaxon:10239 denotes .2% I
T511 2752-2762 UBERON:0002349 denotes U admissio
T512 2852-2862 UBERON:0002349 denotes atients mo
T513 2907-2915 UBERON:0000948 denotes re immun
T514 3037-3044 UBERON:0000948 denotes ion rat
T515 3080-3083 SO:0000694 denotes lop
T516 3088-3098 CHEBI:16737;CHEBI:16737 denotes DS • 20% m
T517 3121-3123 UBERON:0000029 denotes 1
T518 3138-3145 UBERON:0000948 denotes n • Rec
T519 3204-3209 GO:0016265 denotes actor
T47028 3268-3275 UBERON:0000948 denotes N = 47,
T521 3459-3466 UBERON:0000948 denotes al (20
T522 3658-3663 UBERON:0000948 denotes 2%) •
T523 3828-3835 UBERON:0000948 denotes Rhinorr
T524 3846-3850 UBERON:0002084 denotes Hemo
T525 3861-3866 G_3;PG_10 denotes • So
T526 3952-3962 UBERON:0001004 denotes • Dyspnea
T527 4042-4047 UBERON:0000948 denotes ver (
T528 4135-4140 UBERON:0000178 denotes igati
T529 4155-4160 UBERON:0000948 denotes lity
T530 4183-4188 UBERON:0000948 denotes XR, C
T531 4241-4251 UBERON:0002349 denotes R abnormal
T532 4263-4268 UBERON:0001443 denotes Key s
T533 4306-4317 GO:0015671 denotes mission • 7
T534 4366-4373 CHEBI:24996;CHEBI:24996 denotes e 100%
T535 4389-4393 UBERON:0002084 denotes cal
T536 4395-4420 UBERON:0002084 denotes ntilation, mean duration
T537 4435-4445 UBERON:0002349 denotes nea before
T538 4458-4466 SP_9 denotes s associ
T539 4468-4511 SP_9 denotes ed with a more severe outcome (P < 0.001) P
T540 4546-4554 SP_10 denotes in diabe
T541 4556-4568 SP_10 denotes cs (P = 0.04
T542 4569-4579 SP_10;UBERON:0001004 denotes ) • 87.1 %
T543 4580-4600 SP_10 denotes invasive mechanical
T544 4619-4627 SP_9 denotes • 74.2%
T545 4665-4673 SP_9 denotes y in ICU
T546 4687-4692 UBERON:0002107 denotes th ol
T547 4819-4826 UBERON:0002107 denotes al (202
T548 4849-4857 SP_10 denotes sesRetro
T549 4886-4894 SP_9 denotes 20)N = 1
T550 4915-4926 PR:000012546 denotes etrospectiv
T551 4960-4969 GO:0010467 denotes onfirmed
T552 4977-4982 UBERON:0002107 denotes nicop
T553 5005-5009 NCBITaxon:10088 denotes l fe
T554 5015-5020 UBERON:0002107 denotes • Sm
T555 5089-5096 UBERON:0002107 denotes pnea (5
T556 5126-5139 CL:0000091 denotes Sputum (28%)
T557 5144-5155 CL:0000235 denotes moptysis (5
T558 5176-5187 NCBITaxon:11118 denotes 9 days aft
T559 5264-5275 GO:0006953 denotes ugh (59.4)
T560 5294-5299 PR:000000134 denotes Dyspn
T561 5301-5306 PR:000001373 denotes , mea
T562 5311-5316 PR:000001092 denotes ays a
T563 5404-5409 UBERON:0002107 denotes se (1
T564 5418-5426 SP_7 denotes ver (43.
T565 5496-5504 SP_7 denotes m (33.7%
T566 5519-5524 UBERON:0002107 denotes (13.
T567 5557-5562 UBERON:0002107 denotes emopt
T568 5572-5581 CHEBI:16990;CHEBI:16990 denotes ) • ARDS
T569 5586-5593 CHEBI:24996;CHEBI:24996 denotes ) • 1.4
T570 5715-5722 UBERON:0002107 denotes ek Key
T571 5808-5813 UBERON:0002107 denotes iO2 •
T572 5843-5851 SP_7 denotes al Chest
T573 5884-5898 CL:1000488 denotes y most common
T574 5910-5917 UBERON:0002294 denotes lung i
T575 5918-5927 UBERON:0000483 denotes aging fin
T576 5954-5964 GO:0010467 denotes h nonsever
T577 5968-5972 G_3;PG_10;PR:000003622 denotes seas
T578 6026-6033 GO:0008152 denotes ground
T579 6040-6045 UBERON:0002107 denotes opaci
T580 6197-6205 SP_10 denotes infiltra
T581 6206-6223 UBERON:0005409 denotes es • Denuded alve
T582 6225-6227 UBERON:0005409 denotes ar
T583 6244-6252 SP_10 denotes mocyte t
T584 6345-6347 UBERON:0005409 denotes n
T585 6384-6386 UBERON:0005409 denotes s
T586 6544-6553 UBERON:0000916 denotes in 11.1%
T587 7005-7013 SP_10 denotes ne oxyge
T588 7046-7052 UBERON:0001836 denotes es; IC
T589 7061-7066 UBERON:0001988 denotes ive c
T590 7077-7083 UBERON:0000344 denotes ERS-Co
T591 7084-7093 UBERON:0000483 denotes , middle
T592 7098-7114 UBERON:0001744 denotes respiratory synd
T593 7166-7182 UBERON:0001744 denotes vere acute respi
T594 7224-7233 SP_10 denotes spiratory

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
128 4735-4743 Disease denotes COVID-19 MESH:C000657245
153 36-44 Species denotes SARS-CoV Tax:694009
154 46-54 Species denotes MERS-CoV Tax:1335626
155 59-67 Disease denotes COVID-19 MESH:C000657245
162 7076-7084 Species denotes MERS-CoV Tax:1335626
163 7086-7130 Species denotes middle east respiratory syndrome coronavirus Tax:1335626
164 7154-7162 Species denotes SARS-COV Tax:694009
165 7164-7209 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
166 6917-6921 Disease denotes ARDS MESH:D012128
167 6923-6958 Disease denotes acute respiratory distress syndrome MESH:D012128