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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 8847-8851 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T11 10202-10206 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T12 13271-13275 Body_part denotes back http://purl.org/sig/ont/fma/fma25056

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T83 196-209 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T84 1782-1792 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T85 2139-2147 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 2542-2545 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T87 2670-2673 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T88 3117-3120 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T89 3243-3246 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T90 3713-3716 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T91 3844-3847 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T92 5079-5087 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 5524-5527 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T94 5657-5660 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T95 6087-6090 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T96 6220-6223 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T97 6680-6683 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T98 6820-6823 Disease denotes inv http://purl.obolibrary.org/obo/MONDO_0043678
T99 8386-8396 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T100 9714-9724 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T101 9930-9938 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 10289-10297 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 11297-11305 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T104 11725-11733 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T105 13164-13172 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 13820-13829 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T107 13926-13935 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 14016-14025 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T109 14118-14131 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T110 14229-14239 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T111 14396-14406 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T164 50-55 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T165 607-608 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T166 662-663 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T167 820-821 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T168 2197-2202 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3) (4
T169 2239-2240 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T170 2355-2358 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T171 2919-2922 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T172 3462-3463 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T173 4474-4475 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T174 4522-4523 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T175 4788-4800 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T176 5173-5178 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3) (4
T177 5215-5216 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T178 5331-5334 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T179 5897-5900 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T180 6435-6436 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T181 7448-7449 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T182 7496-7497 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T183 7762-7774 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T184 8007-8008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 8020-8024 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T186 8213-8214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T187 8304-8305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T188 8820-8828 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T189 8859-8860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T190 8971-8972 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T191 9040-9041 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 9753-9758 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T193 9759-9762 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T194 10006-10018 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T195 10905-10906 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T196 11544-11556 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T197 11610-11615 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T198 11844-11845 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 11945-11950 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T200 12189-12194 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T201 12236-12247 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T202 12637-12638 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 13261-13262 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T204 13269-13270 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T205 14087-14088 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T206 14465-14477 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T207 14549-14554 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T208 14558-14563 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 10266-10278 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T6 10629-10637 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior
T7 11227-11235 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior
T8 11323-11335 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 392-411 Phenotype denotes social interactions http://purl.obolibrary.org/obo/HP_0008763|http://purl.obolibrary.org/obo/HP_0008763
T7 392-411 Phenotype denotes social interactions http://purl.obolibrary.org/obo/HP_0008763|http://purl.obolibrary.org/obo/HP_0008763

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T286 0-25 Sentence denotes Between-city transmission
T287 26-140 Sentence denotes People may contract the virus from interaction with the infected people who live in the same city or other cities.
T288 141-321 Sentence denotes In Eq. 1, we consider the effects of the number of new infections in other cities and in the epicenter of the epidemic (Wuhan), respectively, using inverse log distance as weights.
T289 322-567 Sentence denotes In addition, geographic proximity may not fully describe the level of social interactions between residents in Wuhan and other cities since the lockdown in Wuhan on January 23 significantly reduced the population flow from Wuhan to other cities.
T290 568-875 Sentence denotes To alleviate this concern, we also use a measure of the size of population flow from Wuhan to a destination city, which is constructed by multiplying the daily migration index on the population flow out of Wuhan (Fig 3) with the share of the flow that a destination city receives provided by Baidu (Fig. 4).
T291 876-976 Sentence denotes For days before January 25, we use the average destination shares between January 10 and January 24.
T292 977-1085 Sentence denotes For days on or after January 24, we use the average destination shares between January 25 and February 2314.
T293 1086-1229 Sentence denotes Table 4 reports the estimates from IV regressions of Eq. 1, and Table 5 reports the results from the same regressions excluding Hubei province.
T294 1230-1416 Sentence denotes Column (4) of Table 4 indicates that in the first sub-sample, one new case leads to 2.456 more cases within 1 week, and the effect is not statistically significant between 1 and 2 weeks.
T295 1417-1592 Sentence denotes Column (6) suggests that in the second sub-sample, one new case leads to 1.127 more cases within 1 week, and the effect is not statistically significant between 1 and 2 weeks.
T296 1593-1793 Sentence denotes The comparison of the coefficients on own city between different sub-samples indicates that the responses of the government and the public have effectively decreased the risk of additional infections.
T297 1794-2089 Sentence denotes Comparing Table 4 with Table 3, we find that although the number of new cases in the preceding second week turns insignificant and smaller in magnitude, coefficients on the number of new cases in the preceding first week are not sensitive to the inclusion of terms on between-city transmissions.
T298 2090-2147 Sentence denotes Table 4 Within- and between-city rransmission of COVID-19
T299 2148-2187 Sentence denotes Jan 19–Feb 29 Jan 19–Feb 1 Feb 2–Feb 29
T300 2188-2211 Sentence denotes (1) (2) (3) (4) (5) (6)
T301 2212-2232 Sentence denotes OLS IV OLS IV OLS IV
T302 2233-2323 Sentence denotes Model A: lagged variables are averages over the preceding first and second week separately
T303 2324-2358 Sentence denotes Average # of new cases, 1-week lag
T304 2359-2421 Sentence denotes Own city 0.862*** 1.387*** 0.939*** 2.456*** 0.786*** 1.127***
T305 2422-2472 Sentence denotes (0.0123) (0.122) (0.102) (0.638) (0.0196) (0.0686)
T306 2473-2535 Sentence denotes Other cities 0.00266 − 0.0248 0.0889 0.0412 − 0.00316 − 0.0212
T307 2536-2608 Sentence denotes wt. = inv. dist. (0.00172) (0.0208) (0.0714) (0.0787) (0.00227) (0.0137)
T308 2609-2663 Sentence denotes Wuhan − 0.0141 0.0303 − 0.879 − 0.957 − 0.00788 0.0236
T309 2664-2733 Sentence denotes wt. = inv. dist. (0.0115) (0.0318) (0.745) (0.955) (0.00782) (0.0200)
T310 2734-2806 Sentence denotes Wuhan 3.74e-05 0.00151*** 0.00462*** 0.00471*** − 0.00211*** − 0.00238**
T311 2807-2887 Sentence denotes wt. = pop. flow (0.000163) (0.000391) (0.000326) (0.000696) (4.01e-05) (0.00113)
T312 2888-2922 Sentence denotes Average # of new cases, 2-week lag
T313 2923-2986 Sentence denotes Own city − 0.425*** − 0.795*** 2.558 − 1.633 − 0.205*** − 0.171
T314 2987-3037 Sentence denotes (0.0318) (0.0643) (2.350) (2.951) (0.0491) (0.224)
T315 3038-3110 Sentence denotes Other cities − 0.00451** − 0.00766 − 0.361 − 0.0404 − 0.00912** − 0.0230
T316 3111-3182 Sentence denotes wt. = inv. dist. (0.00213) (0.00814) (0.371) (0.496) (0.00426) (0.0194)
T317 3183-3236 Sentence denotes Wuhan − 0.0410* 0.0438 3.053 3.031 − 0.0603 − 0.00725
T318 3237-3305 Sentence denotes wt. = inv. dist. (0.0240) (0.0286) (2.834) (3.559) (0.0384) (0.0137)
T319 3306-3375 Sentence denotes Wuhan 0.00261*** 0.00333*** 0.00711*** − 0.00632 0.00167** 0.00368***
T320 3376-3455 Sentence denotes wt. = pop. flow (0.000290) (0.000165) (0.00213) (0.00741) (0.000626) (0.000576)
T321 3456-3521 Sentence denotes Model B: lagged variables are averages over the preceding 2 weeks
T322 3522-3584 Sentence denotes Own city 0.425*** 1.195*** 1.564*** 2.992*** 0.615*** 1.243***
T323 3585-3634 Sentence denotes (0.0771) (0.160) (0.174) (0.892) (0.0544) (0.115)
T324 3635-3706 Sentence denotes Other cities − 0.00901 − 0.0958** 0.0414 0.0704 − 0.0286*** − 0.0821***
T325 3707-3778 Sentence denotes wt. = inv. dist. (0.00641) (0.0428) (0.0305) (0.0523) (0.0101) (0.0246)
T326 3779-3837 Sentence denotes Wuhan − 0.198* − 0.0687** − 0.309 − 0.608 − 0.234* − 0.144
T327 3838-3904 Sentence denotes wt. = inv. dist. (0.104) (0.0268) (0.251) (0.460) (0.121) (0.0994)
T328 3905-3973 Sentence denotes Wuhan 0.00770*** 0.00487*** 0.00779*** 0.00316 0.00829*** 0.00772***
T329 3974-4054 Sentence denotes wt. = pop. flow (0.000121) (0.000706) (0.000518) (0.00276) (0.000367) (0.000517)
T330 4055-4101 Sentence denotes Observations 12,768 12,768 4256 4256 8512 8512
T331 4102-4142 Sentence denotes Number of cities 304 304 304 304 304 304
T332 4143-4183 Sentence denotes Weather controls Yes Yes Yes Yes Yes Yes
T333 4184-4215 Sentence denotes City FE Yes Yes Yes Yes Yes Yes
T334 4216-4247 Sentence denotes Date FE Yes Yes Yes Yes Yes Yes
T335 4248-4304 Sentence denotes The dependent variable is the number of daily new cases.
T336 4305-4525 Sentence denotes The endogenous explanatory variables include the average numbers of new confirmed cases in the own city and nearby cities in the preceding first and second weeks (model A) and averages in the preceding 14 days (model B).
T337 4526-4833 Sentence denotes Weekly averages of daily maximum temperature, precipitation, wind speed, the interaction between precipitation and wind speed, and the inverse log distance weighted sum of these variables in other cities, during the preceding third and fourth weeks, are used as instrumental variables in the IV regressions.
T338 4834-4933 Sentence denotes Weather controls include contemporaneous weather variables in the preceding first and second weeks.
T339 4934-5029 Sentence denotes Standard errors in parentheses are clustered by provinces. *** p < 0.01, ** p < 0.05, * p < 0.1
T340 5030-5123 Sentence denotes Table 5 Within- and between-city transmission of COVID-19, excluding cities in Hubei Province
T341 5124-5163 Sentence denotes Jan 19–Feb 29 Jan 19–Feb 1 Feb 2–Feb 29
T342 5164-5187 Sentence denotes (1) (2) (3) (4) (5) (6)
T343 5188-5208 Sentence denotes OLS IV OLS IV OLS IV
T344 5209-5299 Sentence denotes Model A: lagged variables are averages over the preceding first and second week separately
T345 5300-5334 Sentence denotes Average # of new cases, 1-week lag
T346 5335-5397 Sentence denotes Own city 0.656*** 1.117*** 0.792*** 1.194*** 0.567*** 0.899***
T347 5398-5447 Sentence denotes (0.153) (0.112) (0.0862) (0.302) (0.172) (0.0924)
T348 5448-5517 Sentence denotes Other cities 0.00114 − 0.00213 − 0.0160 − 0.0734 0.000221 − 0.00526**
T349 5518-5594 Sentence denotes wt. = inv. dist. (0.000741) (0.00367) (0.0212) (0.0803) (0.000626) (0.00244)
T350 5595-5650 Sentence denotes Wuhan − 0.000482 0.00420 0.104 0.233 5.89e-05 0.00769**
T351 5651-5723 Sentence denotes wt. = inv. dist. (0.00173) (0.00649) (0.128) (0.156) (0.00194) (0.00379)
T352 5724-5789 Sentence denotes Wuhan 0.00668*** 0.00616*** 0.00641*** 0.00375 − 0.000251 0.00390
T353 5790-5865 Sentence denotes wt. = pop. flow (0.00159) (0.00194) (0.00202) (0.00256) (0.00245) (0.00393)
T354 5866-5900 Sentence denotes Average # of new cases, 2-week lag
T355 5901-5965 Sentence denotes Own city − 0.350*** − 0.580*** 0.230 − 1.541 − 0.157** − 0.250**
T356 5966-6015 Sentence denotes (0.0667) (0.109) (0.572) (1.448) (0.0636) (0.119)
T357 6016-6080 Sentence denotes Other cities − 0.000869 0.00139 0.172 0.584 − 0.00266* − 0.00399
T358 6081-6153 Sentence denotes wt. = inv. dist. (0.00102) (0.00311) (0.122) (0.595) (0.00154) (0.00276)
T359 6154-6213 Sentence denotes Wuhan − 0.00461 0.000894 − 0.447 − 0.970 − 0.00456 0.00478*
T360 6214-6286 Sentence denotes wt. = inv. dist. (0.00304) (0.00592) (0.829) (0.808) (0.00368) (0.00280)
T361 6287-6352 Sentence denotes Wuhan 0.00803*** 0.00203 0.00973*** 0.00734 0.00759*** 0.00466***
T362 6353-6428 Sentence denotes wt. = pop. flow (0.00201) (0.00192) (0.00317) (0.00680) (0.00177) (0.00140)
T363 6429-6494 Sentence denotes Model B: lagged variables are averages over the preceding 2 weeks
T364 6495-6557 Sentence denotes Own city 0.242*** 0.654*** 1.407*** 1.876*** 0.406*** 0.614***
T365 6558-6606 Sentence denotes (0.0535) (0.195) (0.215) (0.376) (0.118) (0.129)
T366 6607-6673 Sentence denotes Other cities 0.000309 − 0.00315 0.00608 0.0194 − 0.00224 − 0.00568
T367 6674-6748 Sentence denotes wt. = inv. dist. (0.00142) (0.00745) (0.0188) (0.0300) (0.00204) (0.00529)
T368 6749-6813 Sentence denotes Wuhan − 0.0133** − 0.0167 − 0.0146 − 0.0362 − 0.0138** − 0.00847
T369 6814-6887 Sentence denotes wt. = inv. dist. (0.00535) (0.0140) (0.0902) (0.0741) (0.00563) (0.00787)
T370 6888-6952 Sentence denotes Wuhan 0.0153*** 0.0133*** 0.00826*** 0.00404 0.0132*** 0.0123***
T371 6953-7028 Sentence denotes wt. = pop. flow (0.00273) (0.00273) (0.00241) (0.00423) (0.00222) (0.00205)
T372 7029-7075 Sentence denotes Observations 12,096 12,096 4032 4032 8064 8064
T373 7076-7116 Sentence denotes Number of cities 288 288 288 288 288 288
T374 7117-7157 Sentence denotes Weather controls Yes Yes Yes Yes Yes Yes
T375 7158-7189 Sentence denotes City FE Yes Yes Yes Yes Yes Yes
T376 7190-7221 Sentence denotes Date FE Yes Yes Yes Yes Yes Yes
T377 7222-7278 Sentence denotes The dependent variable is the number of daily new cases.
T378 7279-7499 Sentence denotes The endogenous explanatory variables include the average numbers of new confirmed cases in the own city and nearby cities in the preceding first and second weeks (model A) and averages in the preceding 14 days (model B).
T379 7500-7807 Sentence denotes Weekly averages of daily maximum temperature, precipitation, wind speed, the interaction between precipitation and wind speed, and the inverse log distance weighted sum of these variables in other cities, during the preceding third and fourth weeks, are used as instrumental variables in the IV regressions.
T380 7808-7907 Sentence denotes Weather controls include contemporaneous weather variables in the preceding first and second weeks.
T381 7908-8003 Sentence denotes Standard errors in parentheses are clustered by provinces. *** p < 0.01, ** p < 0.05, * p < 0.1
T382 8004-8104 Sentence denotes As a robustness test, Table 5 reports the estimation results excluding the cities in Hubei province.
T383 8105-8311 Sentence denotes Column (4) of Table 5 indicates that in the first sub-sample, one new case leads to 1.194 more cases within a week, while in the second sub-sample, one new case only leads to 0.899 more cases within a week.
T384 8312-8580 Sentence denotes Besides, in the second subsample, one new case results in 0.250 fewer new infections between 1 and 2 weeks, which is larger in magnitude and more significant than the estimate (− 0.171) when cities in Hubei province are included for estimation (column (6) of Table 4).
T385 8581-8685 Sentence denotes The time varying patterns in local transmissions are evident using the rolling window analysis (Fig. 5).
T386 8686-8852 Sentence denotes The upper left panel displays the estimated coefficients on local transmissions for various 14-day sub-samples with the starting date labelled on the horizontal axis.
T387 8853-8999 Sentence denotes After a slight increase in the local transmission rates, one case generally leads to fewer and fewer additional cases a few days after January 19.
T388 9000-9225 Sentence denotes Besides, the transmission rate displays a slight increase beginning around February 4, which corresponds to the return travels and work resumption after Chinese Spring Festival, but eventually decreases at around February 12.
T389 9226-9380 Sentence denotes Such decrease may be partly attributed to the social distancing strategies at the city level, so we examine the impacts of relevant policies in Section 5.
T390 9381-9544 Sentence denotes Moreover, the transmission rates in cities outside Hubei province have been kept at low levels throughout the whole sample period (columns (4) and (6) of Table 5).
T391 9545-9725 Sentence denotes These results suggest that the policies adopted at the national and provincial levels soon after January 19 prevented cities outside Hubei from becoming new hotspots of infections.
T392 9726-9854 Sentence denotes Overall, the spread of the virus has been effectively contained by mid February, particularly for cities outside Hubei province.
T393 9855-9939 Sentence denotes Fig. 5 Rolling window analysis of within- and between-city transmission of COVID-19.
T394 9940-10040 Sentence denotes This figure shows the estimated coefficients and 95% CIs from the instrumental variable regressions.
T395 10041-10110 Sentence denotes The specification is the same as the IV regression models in Table 4.
T396 10111-10206 Sentence denotes Each estimation sample contains 14 days with the starting date indicated on the horizontal axis
T397 10207-10360 Sentence denotes In the epidemiology literature, the estimates on the basic reproduction number of COVID-19 are approximately within the wide range of 1.4∼6.5 (Liu et al.
T398 10361-10367 Sentence denotes 2020).
T399 10368-10682 Sentence denotes Its value depends on the estimation method used, underlying assumptions of modeling, time period covered, geographic regions (with varying preparedness of health care systems), and factors considered in the models that affect disease transmissions (such as the behavior of the susceptible and infected population).
T400 10683-10804 Sentence denotes Intuitively, it can be interpreted as measuring the expected number of new cases that are generated by one existing case.
T401 10805-10872 Sentence denotes It is of interest to note that our estimates are within this range.
T402 10873-11047 Sentence denotes Based on the results from model B in Tables 4 and 5, one case leads to 2.992 more cases in the same city in the next 14 days (1.876 if cities in Hubei province are excluded).
T403 11048-11306 Sentence denotes In the second sub-sample (February 2–February 29), these numbers are reduced to 1.243 and 0.614, respectively, suggesting that factors such as public health measures and people’s behavior may play an important role in containing the transmission of COVID-19.
T404 11307-11532 Sentence denotes While our basic reproduction number estimate (R0) is within the range of estimates in the literature and is close to its median, five features may distinguish our estimates from some of the existing epidemiological estimates.
T405 11533-12469 Sentence denotes First, our instrumental variable approach helps isolate the causal effect of virus transmissions from other confounded factors; second, our estimate is based on an extended time period of the COVID-19 pandemic (until the end of February 2020) that may mitigate potential biases in the literature that relies on a shorter sampling period within 1–28 January 2020; third, our modeling makes minimum assumptions of virus transmissions, such as imposing fewer restrictions on the relationship between the unobserved determinants of new cases and the number of cases in the past; fourth, our model simultaneously considers comprehensive factors that may affect virus transmissions, including multiple policy instruments (such as closed management of communities and shelter-at-home order), population flow, within- and between-city transmissions, economic and demographic conditions, weather patterns, and preparedness of health care system.
T406 12470-12658 Sentence denotes Fifth, our study uses spatially disaggregated data that cover China (except its Hubei province), while some other studies examine Wuhan city, Hubei province, China as a whole, or overseas.
T407 12659-12820 Sentence denotes Regarding the between-city transmission from Wuhan, we observe that the population flow better explains the contagion effect than geographic proximity (Table 4).
T408 12821-12961 Sentence denotes In the first sub-sample, one new case in Wuhan leads to more cases in other cities receiving more population flows from Wuhan within 1 week.
T409 12962-13268 Sentence denotes Interestingly, in the second sub-sample, population flow from Wuhan significantly decreases the transmission rate within 1 week, suggesting that people have been taking more cautious measures from high COVID-19 risk areas; however, more arrivals from Wuhan in the preceding second week can still be a risk.
T410 13269-13514 Sentence denotes A back of the envelope calculation indicates that one new case in Wuhan leads to 0.064 (0.050) more cases in the destination city per 10,000 travelers from Wuhan within 1 (2) week between January 19 and February 1 (February 2 and February 29)15.
T411 13515-13608 Sentence denotes Note that while the effect is statistically significant, it should be interpreted in context.
T412 13609-13711 Sentence denotes It was estimated that 15,000,000 people would travel out of Wuhan during the Lunar New Year holiday16.
T413 13712-13807 Sentence denotes If all had gone to one city, this would have directly generated about 171 cases within 2 weeks.
T414 13808-14086 Sentence denotes The risk of infection is likely very low for most travelers except for few who have previous contacts with sources of infection, and person-specific history of past contacts may be an essential predictor for infection risk, in addition to the total number of population flows17.
T415 14087-14179 Sentence denotes A city may also be affected by infections in nearby cities apart from spillovers from Wuhan.
T416 14180-14407 Sentence denotes We find that the coefficients that represent the infectious effects from nearby cities are generally small and not statistically significant (Table 4), implying that few cities outside Wuhan are themselves exporting infections.
T417 14408-14615 Sentence denotes This is consistent with the findings in the World Health Organization (2020b) that other than cases that are imported from Hubei, additional human-to-human transmissions are limited for cities outside Hubei.
T418 14616-14781 Sentence denotes Restricting to cities outside Hubei province, the results are similar (Table 5), except that the transmission from Wuhan is not significant in the first half sample.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
224 26-32 Species denotes People Tax:9606
225 91-97 Species denotes people Tax:9606
226 82-90 Disease denotes infected MESH:D007239
227 196-206 Disease denotes infections MESH:D007239
229 2169-2180 Gene denotes Feb 1 Feb 2 Gene:2233
231 2139-2147 Disease denotes COVID-19 MESH:C000657245
233 5145-5156 Gene denotes Feb 1 Feb 2 Gene:2233
235 5079-5087 Disease denotes COVID-19 MESH:C000657245
237 1782-1792 Disease denotes infections MESH:D007239
239 8386-8396 Disease denotes infections MESH:D007239
241 9930-9938 Disease denotes COVID-19 MESH:C000657245
243 9714-9724 Disease denotes infections MESH:D007239
248 11218-11224 Species denotes people Tax:9606
249 10289-10297 Disease denotes COVID-19 MESH:C000657245
250 10661-10669 Disease denotes infected MESH:D007239
251 11297-11305 Disease denotes COVID-19 MESH:C000657245
253 11725-11733 Disease denotes COVID-19 MESH:C000657245
260 13107-13113 Species denotes people Tax:9606
261 13642-13648 Species denotes people Tax:9606
262 13164-13172 Disease denotes COVID-19 MESH:C000657245
263 13820-13829 Disease denotes infection MESH:D007239
264 13926-13935 Disease denotes infection MESH:D007239
265 14016-14025 Disease denotes infection MESH:D007239
270 14549-14554 Species denotes human Tax:9606
271 14558-14563 Species denotes human Tax:9606
272 14118-14128 Disease denotes infections MESH:D007239
273 14396-14406 Disease denotes infections MESH:D007239