> top > docs > PMC:7205724 > spans > 6627-7092 > annotations

PMC:7205724 / 6627-7092 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
248 14-15 Gene denotes S Gene:43740568
249 4-13 Species denotes 2019-nCoV Tax:2697049
250 161-169 Species denotes SARS-CoV Tax:694009
251 417-426 Species denotes 2019-nCoV Tax:2697049
252 286-293 Chemical denotes proline MESH:D011392
253 382-398 Chemical denotes O-linked glycans

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T50 16-23 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T51 172-184 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T52 275-285 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T53 286-293 Body_part denotes proline http://purl.org/sig/ont/fma/fma82761

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T47 161-169 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T77 79-81 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T78 86-88 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T79 86-88 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T80 238-240 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T95 16-23 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T96 86-88 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T97 172-184 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T98 275-285 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T99 275-280 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T100 281-285 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T101 286-293 Chemical denotes proline http://purl.obolibrary.org/obo/CHEBI_17203|http://purl.obolibrary.org/obo/CHEBI_26271
T103 391-398 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T39 320-324 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T67 16-23 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68 172-184 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T69 275-285 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T70 286-293 Chemical denotes proline http://purl.obolibrary.org/obo/CHEBI_17203|http://purl.obolibrary.org/obo/CHEBI_26271
T72 391-398 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T59 4-13 Species denotes 2019-nCoV NCBItxid:2697049
T60 161-169 Species denotes SARS-CoV NCBItxid:694009
T61 342-359 Species denotes inserted sequence NCBItxid:45328
T62 417-426 Species denotes 2019-nCoV NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T62 0-115 Sentence denotes The 2019-nCoV S protein includes 13 and 9N-linked glycosylation sequons in the S1 and S2 subunit, respectively [3].
T63 116-241 Sentence denotes All of these have previously occurred in the SARS-CoV S glycoprotein, except for four-linked glycosylation sequons in the S1.
T64 242-465 Sentence denotes Also, due to the existence of an amino acid proline in the polybasic cleavage site, which makes the inserted sequence PRRA, there are three O-linked glycans introduced to the 2019-nCoV RBD residues S673, T678, and S686 [7].

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
249 4-13 Species denotes 2019-nCoV Tax:2697049
248 14-15 Gene denotes S Gene:43740568
250 161-169 Species denotes SARS-CoV Tax:694009
252 286-293 Chemical denotes proline MESH:D011392
253 382-398 Chemical denotes O-linked glycans
251 417-426 Species denotes 2019-nCoV Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T903 14-23 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T936 170-184 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T1035 427-430 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1097 0-3 DT denotes The
T1098 4-13 JJ denotes 2019-nCoV
T1099 14-15 NN denotes S
T1100 16-23 NN denotes protein
T1101 24-32 VBZ denotes includes
T1102 33-35 CD denotes 13
T1103 36-39 CC denotes and
T1104 40-49 JJ denotes 9N-linked
T1105 50-63 NN denotes glycosylation
T1106 64-71 NNS denotes sequons
T1107 72-74 IN denotes in
T1108 75-78 DT denotes the
T1109 79-81 NN denotes S1
T1110 82-85 CC denotes and
T1111 86-88 NN denotes S2
T1112 89-96 NN denotes subunit
T1113 96-97 -COMMA- denotes ,
T1114 98-110 RB denotes respectively
T1115 111-112 -LRB- denotes [
T1116 112-113 CD denotes 3
T1117 113-114 -RRB- denotes ]
T1118 116-119 DT denotes All
T1119 120-122 IN denotes of
T1120 123-128 DT denotes these
T1121 129-133 VBP denotes have
T1122 134-144 RB denotes previously
T1123 145-153 VBD denotes occurred
T1124 154-156 IN denotes in
T1125 157-160 DT denotes the
T1126 161-169 JJ denotes SARS-CoV
T1127 170-171 NN denotes S
T1128 172-184 NN denotes glycoprotein
T1129 184-185 -COMMA- denotes ,
T1130 186-192 IN denotes except
T1131 193-196 IN denotes for
T1132 197-208 JJ denotes four-linked
T1133 209-222 NN denotes glycosylation
T1134 223-230 NNS denotes sequons
T1135 231-233 IN denotes in
T1136 234-237 DT denotes the
T1137 238-240 NN denotes S1
T1138 242-246 RB denotes Also
T1139 246-247 -COMMA- denotes ,
T1140 248-251 JJ denotes due
T1141 252-254 TO denotes to
T1142 255-258 DT denotes the
T1143 259-268 NN denotes existence
T1144 269-271 IN denotes of
T1145 272-274 DT denotes an
T1146 275-280 JJ denotes amino
T1147 281-285 NN denotes acid
T1148 286-293 NN denotes proline
T1149 294-296 IN denotes in
T1150 297-300 DT denotes the
T1151 301-310 JJ denotes polybasic
T1152 311-319 NN denotes cleavage
T1153 320-324 NN denotes site
T1154 324-325 -COMMA- denotes ,
T1155 326-331 WDT denotes which
T1156 332-337 VBZ denotes makes
T1157 338-341 DT denotes the
T1158 342-350 VBN denotes inserted
T1159 351-359 NN denotes sequence
T1160 360-364 NN denotes PRRA
T1161 364-365 -COMMA- denotes ,
T1162 366-371 EX denotes there
T1163 372-375 VBP denotes are
T1164 376-381 CD denotes three
T1165 382-390 JJ denotes O-linked
T1166 391-398 NNS denotes glycans
T1167 399-409 VBN denotes introduced
T1168 410-412 TO denotes to
T1169 413-416 DT denotes the
T1170 417-426 JJ denotes 2019-nCoV
T1171 427-430 NN denotes RBD
T1172 431-439 NNS denotes residues
T1173 440-444 NN denotes S673
T1174 444-445 -COMMA- denotes ,
T1175 446-450 NN denotes T678
T1176 450-451 -COMMA- denotes ,
T1177 452-455 CC denotes and
T1178 456-460 NN denotes S686
T1179 461-462 -LRB- denotes [
T1180 462-463 CD denotes 7
T1181 463-464 -RRB- denotes ]
R1091 T1100 T1098 arg1Of protein,2019-nCoV
R1092 T1100 T1099 arg1Of protein,S
R1093 T1100 T1101 arg1Of protein,includes
R1094 T1106 T1101 arg2Of sequons,includes
R1090 T1100 T1097 arg1Of protein,The
R1095 T1106 T1102 arg1Of sequons,13
R1096 T1106 T1103 arg1Of sequons,and
R1097 T1106 T1104 arg1Of sequons,9N-linked
R1098 T1106 T1105 arg1Of sequons,glycosylation
R1099 T1106 T1107 arg1Of sequons,in
R1100 T1112 T1107 arg2Of subunit,in
R1101 T1112 T1108 arg1Of subunit,the
R1102 T1112 T1109 arg1Of subunit,S1
R1103 T1109 T1110 arg1Of S1,and
R1104 T1111 T1110 arg2Of S2,and
R1105 T1112 T1111 arg1Of subunit,S2
R1106 T1106 T1113 arg1Of sequons,","
R1107 T1106 T1114 arg1Of sequons,respectively
R1108 T1101 T1115 arg1Of includes,[
R1109 T1116 T1115 arg2Of 3,[
R1110 T1117 T1115 arg3Of ],[
R1111 T1118 T1119 arg1Of All,of
R1112 T1120 T1119 arg2Of these,of
R1113 T1118 T1121 arg1Of All,have
R1114 T1123 T1121 arg2Of occurred,have
R1115 T1123 T1122 arg1Of occurred,previously
R1116 T1118 T1123 arg1Of All,occurred
R1117 T1123 T1124 arg1Of occurred,in
R1118 T1128 T1124 arg2Of glycoprotein,in
R1119 T1128 T1125 arg1Of glycoprotein,the
R1120 T1128 T1126 arg1Of glycoprotein,SARS-CoV
R1121 T1128 T1127 arg1Of glycoprotein,S
R1122 T1123 T1129 arg1Of occurred,","
R1123 T1131 T1130 arg1Of for,except
R1124 T1123 T1131 arg1Of occurred,for
R1125 T1134 T1131 arg2Of sequons,for
R1126 T1134 T1132 arg1Of sequons,four-linked
R1127 T1134 T1133 arg1Of sequons,glycosylation
R1128 T1134 T1135 arg1Of sequons,in
R1129 T1137 T1135 arg2Of S1,in
R1130 T1137 T1136 arg1Of S1,the
R1131 T1163 T1138 arg1Of are,Also
R1132 T1163 T1139 arg1Of are,","
R1133 T1141 T1140 arg1Of to,due
R1134 T1163 T1141 arg1Of are,to
R1135 T1143 T1141 arg2Of existence,to
R1136 T1143 T1142 arg1Of existence,the
R1137 T1143 T1144 arg1Of existence,of
R1138 T1148 T1144 arg2Of proline,of
R1139 T1148 T1145 arg1Of proline,an
R1140 T1148 T1146 arg1Of proline,amino
R1141 T1148 T1147 arg1Of proline,acid
R1142 T1148 T1149 arg1Of proline,in
R1143 T1153 T1149 arg2Of site,in
R1144 T1153 T1150 arg1Of site,the
R1145 T1153 T1151 arg1Of site,polybasic
R1146 T1153 T1152 arg1Of site,cleavage
R1147 T1148 T1154 arg1Of proline,","
R1148 T1148 T1155 arg1Of proline,which
R1149 T1148 T1156 arg1Of proline,makes
R1150 T1160 T1156 arg2Of PRRA,makes
R1151 T1160 T1157 arg1Of PRRA,the
R1152 T1160 T1158 arg2Of PRRA,inserted
R1153 T1160 T1159 arg1Of PRRA,sequence
R1154 T1163 T1161 arg1Of are,","
R1155 T1162 T1163 arg1Of there,are
R1156 T1166 T1163 arg2Of glycans,are
R1157 T1166 T1164 arg1Of glycans,three
R1158 T1166 T1165 arg1Of glycans,O-linked
R1159 T1166 T1167 arg2Of glycans,introduced
R1160 T1167 T1168 arg1Of introduced,to
R1161 T1177 T1168 arg2Of and,to
R1162 T1177 T1169 arg1Of and,the
R1163 T1172 T1170 arg1Of residues,2019-nCoV
R1164 T1172 T1171 arg1Of residues,RBD
R1165 T1177 T1172 arg1Of and,residues
R1166 T1173 T1174 arg1Of S673,","
R1167 T1175 T1174 arg2Of T678,","
R1168 T1177 T1176 arg1Of and,","
R1169 T1174 T1177 arg1Of ",",and
R1170 T1178 T1177 arg2Of S686,and
R1171 T1177 T1179 arg1Of and,[
R1172 T1180 T1179 arg2Of 7,[
R1173 T1181 T1179 arg3Of ],[

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T12 50-63 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T13 209-222 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T50 16-23 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T51 172-184 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T52 275-285 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T53 286-293 Body_part denotes proline http://purl.org/sig/ont/fma/fma82761

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T46 161-169 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T10 50-63 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 209-222 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 50-63 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 209-222 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T62 0-115 Sentence denotes The 2019-nCoV S protein includes 13 and 9N-linked glycosylation sequons in the S1 and S2 subunit, respectively [3].
T63 116-241 Sentence denotes All of these have previously occurred in the SARS-CoV S glycoprotein, except for four-linked glycosylation sequons in the S1.
T64 242-465 Sentence denotes Also, due to the existence of an amino acid proline in the polybasic cleavage site, which makes the inserted sequence PRRA, there are three O-linked glycans introduced to the 2019-nCoV RBD residues S673, T678, and S686 [7].

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T89 116-119 https://glytoucan.org/Structures/Glycans/G05518TD denotes All