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PMC:7205724 / 4098-5309 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
140 663-666 Gene denotes ACE Gene:1636
141 470-475 Gene denotes furin Gene:5045
142 226-231 Gene denotes furin Gene:5045
143 581-582 Gene denotes S Gene:43740568
144 528-529 Gene denotes S Gene:43740568
145 200-201 Gene denotes S Gene:43740568
146 189-199 Species denotes SARS-CoV 2 Tax:2697049
147 262-267 Species denotes human Tax:9606
148 268-278 Species denotes SARS-CoV 2 Tax:2697049
149 298-303 Species denotes human Tax:9606
150 304-312 Species denotes SARS-CoV Tax:694009
151 328-332 Species denotes CoVs Tax:11118
152 357-360 Species denotes CoV Tax:11118
153 517-527 Species denotes SARS-CoV 2 Tax:2697049
154 570-580 Species denotes SARS-CoV 2 Tax:2697049
155 657-662 Species denotes human Tax:9606
156 693-702 Species denotes SARS-CoV2 Tax:2697049
157 600-606 CellLine denotes VeroE6 CVCL:0574
165 1064-1069 Gene denotes furin Gene:5045
166 832-838 Species denotes humans Tax:9606
167 930-956 Species denotes avian paramyxovirus type 7 Tax:622416
168 958-964 Species denotes APMV-7 Tax:622416
169 1050-1056 Species denotes APMV-7 Tax:622416
170 1156-1163 Species denotes chicken Tax:9031
171 1201-1210 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 110-121 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T23 126-137 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T24 607-612 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T25 638-643 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T26 1007-1014 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 1132-1136 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 189-197 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 268-276 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 304-312 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 318-322 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 347-351 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 517-525 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 570-578 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 693-697 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 1201-1210 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39 75-76 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 163-165 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T41 170-172 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T42 170-172 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T43 214-215 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 262-267 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T45 298-303 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T46 314-317 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T47 495-497 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T48 498-500 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T49 498-500 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T50 600-612 http://purl.obolibrary.org/obo/CLO_0051719 denotes VeroE6 cells
T51 638-643 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T52 657-662 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T53 743-745 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T54 746-748 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T55 746-748 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T56 759-760 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57 794-795 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 796-801 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T59 832-838 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T60 1109-1118 http://purl.obolibrary.org/obo/CL_0000228 denotes syncytium
T61 1132-1136 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T62 1156-1163 http://purl.obolibrary.org/obo/NCBITaxon_9031 denotes chicken
T63 1179-1184 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T23 110-121 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T24 110-115 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T25 116-121 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T26 126-137 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T27 170-172 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T28 498-500 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T29 746-748 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T30 1007-1014 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T4 663-666 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes ACE http://purl.bioontology.org/ontology/MEDDRA/10050289
T5 1137-1145 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes cultures http://purl.bioontology.org/ontology/MEDDRA/10061447

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T12 26-30 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T13 241-245 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T14 485-489 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T15 607-612 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T16 638-643 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T17 780-784 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T18 796-801 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 817-827 http://purl.obolibrary.org/obo/IDO_0000450 denotes pathogenic
T20 855-865 http://purl.obolibrary.org/obo/IDO_0000450 denotes pathogenic
T21 1024-1028 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T22 1093-1104 http://purl.obolibrary.org/obo/IDO_0000608 denotes replication
T23 1132-1136 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T24 1179-1184 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T25 1201-1210 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 110-121 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T16 126-137 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T17 1007-1014 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T36 189-199 Species denotes SARS-CoV 2 NCBItxid:2697049
T37 262-276 Species denotes human SARS-CoV NCBItxid:694009
T38 298-312 Species denotes human SARS-CoV NCBItxid:694009
T39 314-332 Species denotes bat SARS-like CoVs NCBItxid:1508227
T40 338-346 Species denotes pangolin NCBItxid:9972|NCBItxid:9971
T42 347-360 Species denotes SARS-like CoV NCBItxid:694009
T43 517-527 Species denotes SARS-CoV 2 NCBItxid:2697049
T44 570-580 Species denotes SARS-CoV 2 NCBItxid:2697049
T45 657-662 Species denotes human NCBItxid:9606
T46 693-702 Species denotes SARS-CoV2 NCBItxid:2697049
T47 832-838 Species denotes humans NCBItxid:9605
T48 930-956 Species denotes avian paramyxovirus type 7 NCBItxid:2560317
T49 958-964 Species denotes APMV-7 NCBItxid:2560317
T50 1050-1056 Species denotes APMV-7 NCBItxid:2560317
T51 1156-1163 Species denotes chicken NCBItxid:9031

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T40 0-30 Sentence denotes 3.1.1 Polybasic cleavage site
T41 31-202 Sentence denotes As evidenced by sequence analysis, there is a residue insertion formed of four amino acids (12 nucleotides) at the boundary between S1 and S2 subunits of the SARS-CoV 2 S.
T42 203-405 Sentence denotes It defines a polybasic furin cleavage site of RRAR for the human SARS-CoV 2 that was absent in human SARS-CoV, bat SARS-like CoVs, and pangolin SARS-like CoV while might be present in other species [3].
T43 406-556 Sentence denotes After the introduction of mutation to the residue insertion and furin cleavage site, the S1/S2 cleavage of the SARS-CoV 2 S did not longer take place.
T44 557-667 Sentence denotes However, the SARS-CoV 2 S entry raised for VeroE6 cells and remained high in BHK cells that express human ACE.
T45 668-758 Sentence denotes Therefore, it seems that SARS-CoV2 transmissibility does not depend on the S1/S2 cleavage.
T46 759-884 Sentence denotes A polybasic cleavage site explains a virus that is highly-pathogenic for humans while it is low-pathogenic for other species.
T47 885-1033 Sentence denotes For example, using reverse genetic tools, an avian paramyxovirus type 7 (APMV-7) was developed by mutating the fusion (F) protein cleavage site [4].
T48 1034-1146 Sentence denotes The constructed APMV-7 showed furin cleavage and increased replication and syncytium formation in cell cultures.
T49 1147-1211 Sentence denotes However, chicken exposed to the virus did not exhibit infection.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
165 1064-1069 Gene denotes furin Gene:5045
170 1156-1163 Species denotes chicken Tax:9031
171 1201-1210 Disease denotes infection MESH:D007239
146 189-199 Species denotes SARS-CoV 2 Tax:2697049
145 200-201 Gene denotes S Gene:43740568
142 226-231 Gene denotes furin Gene:5045
147 262-267 Species denotes human Tax:9606
148 268-278 Species denotes SARS-CoV 2 Tax:2697049
149 298-303 Species denotes human Tax:9606
150 304-312 Species denotes SARS-CoV Tax:694009
151 328-332 Species denotes CoVs Tax:11118
152 357-360 Species denotes CoV Tax:11118
141 470-475 Gene denotes furin Gene:5045
153 517-527 Species denotes SARS-CoV 2 Tax:2697049
144 528-529 Gene denotes S Gene:43740568
154 570-580 Species denotes SARS-CoV 2 Tax:2697049
143 581-582 Gene denotes S Gene:43740568
157 600-606 CellLine denotes VeroE6 CVCL:0574
155 657-662 Species denotes human Tax:9606
140 663-666 Gene denotes ACE Gene:1636
156 693-702 Species denotes SARS-CoV2 Tax:2697049
166 832-838 Species denotes humans Tax:9606
167 930-956 Species denotes avian paramyxovirus type 7 Tax:622416
168 958-964 Species denotes APMV-7 Tax:622416
169 1050-1056 Species denotes APMV-7 Tax:622416

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T534 226-231 Protein denotes furin https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958
T542 470-475 Protein denotes furin https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958
T550 663-666 Protein denotes ACE https://www.uniprot.org/uniprot/Q9GLN7|https://www.uniprot.org/uniprot/Q9GLN6|https://www.uniprot.org/uniprot/Q9EQM9|https://www.uniprot.org/uniprot/Q8CFN1|https://www.uniprot.org/uniprot/Q7TMC6|https://www.uniprot.org/uniprot/Q7M4L4|https://www.uniprot.org/uniprot/Q6GTS2|https://www.uniprot.org/uniprot/Q59GY8|https://www.uniprot.org/uniprot/Q53YX9|https://www.uniprot.org/uniprot/Q50JE5|https://www.uniprot.org/uniprot/Q10751|https://www.uniprot.org/uniprot/Q0GA41|https://www.uniprot.org/uniprot/P47820|https://www.uniprot.org/uniprot/P22968|https://www.uniprot.org/uniprot/P22967|https://www.uniprot.org/uniprot/P22966|https://www.uniprot.org/uniprot/P12822|https://www.uniprot.org/uniprot/P12821|https://www.uniprot.org/uniprot/P12820|https://www.uniprot.org/uniprot/P09470|https://www.uniprot.org/uniprot/O02852|https://www.uniprot.org/uniprot/E7EU16|https://www.uniprot.org/uniprot/B4DXI3|https://www.uniprot.org/uniprot/B0LPF0|https://www.uniprot.org/uniprot/Q9VJV3
T575 1003-1014 Protein denotes (F) protein https://www.uniprot.org/uniprot/Q91WV9|https://www.uniprot.org/uniprot/Q3UEQ0|https://www.uniprot.org/uniprot/Q38041|https://www.uniprot.org/uniprot/P97322|https://www.uniprot.org/uniprot/P49429|https://www.uniprot.org/uniprot/P32755|https://www.uniprot.org/uniprot/P0C045|https://www.uniprot.org/uniprot/P0C044|https://www.uniprot.org/uniprot/P08767|https://www.uniprot.org/uniprot/P07931|https://www.uniprot.org/uniprot/P03642|https://www.uniprot.org/uniprot/P03641|https://www.uniprot.org/uniprot/O88655
T588 1064-1069 Protein denotes furin https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T659 0-5 CD denotes 3.1.1
T660 7-16 JJ denotes Polybasic
T661 17-25 NN denotes cleavage
T662 26-30 NN denotes site
T663 31-33 IN denotes As
T664 34-43 VBN denotes evidenced
T665 44-46 IN denotes by
T666 47-55 NN denotes sequence
T667 56-64 NN denotes analysis
T668 64-65 -COMMA- denotes ,
T669 66-71 EX denotes there
T670 72-74 VBZ denotes is
T671 75-76 DT denotes a
T672 77-84 NN denotes residue
T673 85-94 NN denotes insertion
T674 95-101 VBN denotes formed
T675 102-104 IN denotes of
T676 105-109 CD denotes four
T677 110-115 NN denotes amino
T678 116-121 NNS denotes acids
T679 122-123 -LRB- denotes (
T680 123-125 CD denotes 12
T681 126-137 NNS denotes nucleotides
T682 137-138 -RRB- denotes )
T683 139-141 IN denotes at
T684 142-145 DT denotes the
T685 146-154 NN denotes boundary
T686 155-162 IN denotes between
T687 163-165 NN denotes S1
T688 166-169 CC denotes and
T689 170-172 NN denotes S2
T690 173-181 NNS denotes subunits
T691 182-184 IN denotes of
T692 185-188 DT denotes the
T693 189-197 NN denotes SARS-CoV
T694 198-199 CD denotes 2
T695 200-202 NNP denotes S.
T696 203-205 PRP denotes It
T697 206-213 VBZ denotes defines
T698 214-215 DT denotes a
T699 216-225 JJ denotes polybasic
T700 226-231 NN denotes furin
T701 232-240 NN denotes cleavage
T702 241-245 NN denotes site
T703 246-248 IN denotes of
T704 249-253 NN denotes RRAR
T705 254-257 IN denotes for
T706 258-261 DT denotes the
T707 262-267 JJ denotes human
T708 268-276 NN denotes SARS-CoV
T709 277-278 CD denotes 2
T710 279-283 WDT denotes that
T711 284-287 VBD denotes was
T712 288-294 JJ denotes absent
T713 295-297 IN denotes in
T714 298-303 JJ denotes human
T715 304-312 NN denotes SARS-CoV
T716 312-313 -COMMA- denotes ,
T717 314-317 NN denotes bat
T718 318-327 JJ denotes SARS-like
T719 328-332 NNS denotes CoVs
T720 332-333 -COMMA- denotes ,
T721 334-337 CC denotes and
T722 338-346 NN denotes pangolin
T723 347-356 JJ denotes SARS-like
T724 357-360 NN denotes CoV
T725 361-366 NN denotes while
T726 367-372 MD denotes might
T727 373-375 VB denotes be
T728 376-383 JJ denotes present
T729 384-386 IN denotes in
T730 387-392 JJ denotes other
T731 393-400 NNS denotes species
T732 401-402 -LRB- denotes [
T733 402-403 CD denotes 3
T734 403-404 -RRB- denotes ]
T735 406-411 IN denotes After
T736 412-415 DT denotes the
T737 416-428 NN denotes introduction
T738 429-431 IN denotes of
T739 432-440 NN denotes mutation
T740 441-443 TO denotes to
T741 444-447 DT denotes the
T742 448-455 NN denotes residue
T743 456-465 NN denotes insertion
T744 466-469 CC denotes and
T745 470-475 NN denotes furin
T746 476-484 NN denotes cleavage
T747 485-489 NN denotes site
T748 489-490 -COMMA- denotes ,
T749 491-494 DT denotes the
T750 495-500 NN denotes S1/S2
T751 501-509 NN denotes cleavage
T752 510-512 IN denotes of
T753 513-516 DT denotes the
T754 517-525 JJ denotes SARS-CoV
T755 526-527 CD denotes 2
T756 528-529 NN denotes S
T757 530-533 VBD denotes did
T758 534-537 RB denotes not
T759 538-544 RBR denotes longer
T760 545-549 VB denotes take
T761 550-555 NN denotes place
T762 557-564 RB denotes However
T763 564-565 -COMMA- denotes ,
T764 566-569 DT denotes the
T765 570-578 JJ denotes SARS-CoV
T766 579-580 CD denotes 2
T767 581-582 NN denotes S
T768 583-588 NN denotes entry
T769 589-595 VBN denotes raised
T770 596-599 IN denotes for
T771 600-606 NN denotes VeroE6
T772 607-612 NNS denotes cells
T773 613-616 CC denotes and
T774 617-625 VBD denotes remained
T775 626-630 JJ denotes high
T776 631-633 IN denotes in
T777 634-637 NN denotes BHK
T778 638-643 NNS denotes cells
T779 644-648 WDT denotes that
T780 649-656 VBP denotes express
T781 657-662 JJ denotes human
T782 663-666 NN denotes ACE
T783 668-677 RB denotes Therefore
T784 677-678 -COMMA- denotes ,
T785 679-681 PRP denotes it
T786 682-687 VBZ denotes seems
T787 688-692 IN denotes that
T788 693-702 NN denotes SARS-CoV2
T789 703-719 NN denotes transmissibility
T790 720-724 VBZ denotes does
T791 725-728 RB denotes not
T792 729-735 VB denotes depend
T793 736-738 IN denotes on
T794 739-742 DT denotes the
T795 743-748 NN denotes S1/S2
T796 749-757 NN denotes cleavage
T797 759-760 DT denotes A
T798 761-770 JJ denotes polybasic
T799 771-779 NN denotes cleavage
T800 780-784 NN denotes site
T801 785-793 VBZ denotes explains
T802 794-795 DT denotes a
T803 796-801 NN denotes virus
T804 802-806 WDT denotes that
T805 807-809 VBZ denotes is
T806 810-827 JJ denotes highly-pathogenic
T807 828-831 IN denotes for
T808 832-838 NNS denotes humans
T809 839-844 IN denotes while
T810 845-847 PRP denotes it
T811 848-850 VBZ denotes is
T812 851-865 JJ denotes low-pathogenic
T813 866-869 IN denotes for
T814 870-875 JJ denotes other
T815 876-883 NNS denotes species
T816 885-888 IN denotes For
T817 889-896 NN denotes example
T818 896-897 -COMMA- denotes ,
T819 898-903 VBG denotes using
T820 904-911 JJ denotes reverse
T821 912-919 JJ denotes genetic
T822 920-925 NNS denotes tools
T823 925-926 -COMMA- denotes ,
T824 927-929 DT denotes an
T825 930-935 JJ denotes avian
T826 936-949 NN denotes paramyxovirus
T827 950-954 NN denotes type
T828 955-956 CD denotes 7
T829 957-958 -LRB- denotes (
T830 958-964 NN denotes APMV-7
T831 964-965 -RRB- denotes )
T832 966-969 VBD denotes was
T833 970-979 VBN denotes developed
T834 980-982 IN denotes by
T835 983-991 VBG denotes mutating
T836 992-995 DT denotes the
T837 996-1002 NN denotes fusion
T838 1003-1004 -LRB- denotes (
T839 1004-1005 NN denotes F
T840 1005-1006 -RRB- denotes )
T841 1007-1014 NN denotes protein
T842 1015-1023 NN denotes cleavage
T843 1024-1028 NN denotes site
T844 1029-1030 -LRB- denotes [
T845 1030-1031 CD denotes 4
T846 1031-1032 -RRB- denotes ]
T847 1034-1037 DT denotes The
T848 1038-1049 VBN denotes constructed
T849 1050-1056 NN denotes APMV-7
T850 1057-1063 VBD denotes showed
T851 1064-1069 NN denotes furin
T852 1070-1078 NN denotes cleavage
T853 1079-1082 CC denotes and
T854 1083-1092 VBD denotes increased
T855 1093-1104 NN denotes replication
T856 1105-1108 CC denotes and
T857 1109-1118 NN denotes syncytium
T858 1119-1128 NN denotes formation
T859 1129-1131 IN denotes in
T860 1132-1136 NN denotes cell
T861 1137-1145 NNS denotes cultures
T862 1147-1154 RB denotes However
T863 1154-1155 -COMMA- denotes ,
T864 1156-1163 NN denotes chicken
T865 1164-1171 VBN denotes exposed
T866 1172-1174 TO denotes to
T867 1175-1178 DT denotes the
T868 1179-1184 NN denotes virus
T869 1185-1188 VBD denotes did
T870 1189-1192 RB denotes not
T871 1193-1200 VB denotes exhibit
T872 1201-1210 NN denotes infection
R770 T768 T774 arg1Of entry,remained
R771 T775 T774 arg2Of high,remained
R772 T768 T775 arg1Of entry,high
R773 T775 T776 arg1Of high,in
R774 T778 T776 arg2Of cells,in
R775 T778 T777 arg1Of cells,BHK
R776 T778 T779 arg1Of cells,that
R777 T778 T780 arg1Of cells,express
R778 T782 T780 arg2Of ACE,express
R779 T782 T781 arg1Of ACE,human
R780 T786 T783 arg1Of seems,Therefore
R781 T786 T784 arg1Of seems,","
R782 T785 T786 arg1Of it,seems
R783 T792 T786 arg2Of depend,seems
R784 T792 T787 arg1Of depend,that
R832 T833 T834 arg1Of developed,by
R833 T835 T834 arg2Of mutating,by
R834 T843 T835 arg2Of site,mutating
R835 T843 T836 arg1Of site,the
R836 T843 T837 arg1Of site,fusion
R837 T843 T838 arg1Of site,(
R838 T839 T838 arg2Of F,(
R839 T840 T838 arg3Of ),(
R840 T843 T841 arg1Of site,protein
R841 T843 T842 arg1Of site,cleavage
R842 T835 T844 arg1Of mutating,[
R843 T845 T844 arg2Of 4,[
R844 T846 T844 arg3Of ],[
R845 T849 T847 arg1Of APMV-7,The
R846 T849 T848 arg2Of APMV-7,constructed
R847 T849 T850 arg1Of APMV-7,showed
R848 T852 T850 arg2Of cleavage,showed
R849 T852 T851 arg1Of cleavage,furin
R850 T850 T853 arg1Of showed,and
R851 T854 T853 arg2Of increased,and
R852 T849 T854 arg1Of APMV-7,increased
R853 T856 T854 arg2Of and,increased
R854 T855 T856 arg1Of replication,and
R855 T858 T856 arg2Of formation,and
R653 T662 T659 arg1Of site,3.1.1
R654 T662 T660 arg1Of site,Polybasic
R655 T662 T661 arg1Of site,cleavage
R656 T670 T663 arg1Of is,As
R657 T664 T663 arg2Of evidenced,As
R658 T664 T665 arg1Of evidenced,by
R659 T667 T665 arg2Of analysis,by
R660 T667 T666 arg1Of analysis,sequence
R661 T670 T668 arg1Of is,","
R662 T669 T670 arg1Of there,is
R663 T673 T670 arg2Of insertion,is
R664 T673 T671 arg1Of insertion,a
R665 T673 T672 arg1Of insertion,residue
R666 T673 T674 arg2Of insertion,formed
R667 T674 T675 arg1Of formed,of
R668 T678 T675 arg2Of acids,of
R669 T678 T676 arg1Of acids,four
R670 T678 T677 arg1Of acids,amino
R671 T678 T679 arg1Of acids,(
R672 T681 T679 arg2Of nucleotides,(
R673 T682 T679 arg3Of ),(
R674 T681 T680 arg1Of nucleotides,12
R675 T674 T683 arg1Of formed,at
R676 T685 T683 arg2Of boundary,at
R677 T685 T684 arg1Of boundary,the
R678 T670 T686 arg1Of is,between
R679 T690 T686 arg2Of subunits,between
R680 T690 T687 arg1Of subunits,S1
R681 T687 T688 arg1Of S1,and
R682 T689 T688 arg2Of S2,and
R683 T690 T689 arg1Of subunits,S2
R684 T690 T691 arg1Of subunits,of
R685 T695 T691 arg2Of S.,of
R686 T695 T692 arg1Of S.,the
R687 T695 T693 arg1Of S.,SARS-CoV
R688 T695 T694 arg1Of S.,2
R689 T696 T697 arg1Of It,defines
R690 T695 T697 arg2Of S.,defines
R691 T702 T698 arg1Of site,a
R692 T702 T699 arg1Of site,polybasic
R693 T702 T700 arg1Of site,furin
R694 T702 T701 arg1Of site,cleavage
R695 T702 T703 arg1Of site,of
R696 T704 T703 arg2Of RRAR,of
R697 T702 T705 arg1Of site,for
R698 T708 T705 arg2Of SARS-CoV,for
R699 T708 T706 arg1Of SARS-CoV,the
R700 T708 T707 arg1Of SARS-CoV,human
R701 T708 T709 arg1Of SARS-CoV,2
R702 T702 T710 arg1Of site,that
R703 T702 T711 arg1Of site,was
R704 T712 T711 arg2Of absent,was
R705 T702 T712 arg1Of site,absent
R706 T712 T713 arg1Of absent,in
R707 T721 T713 arg2Of and,in
R708 T715 T714 arg1Of SARS-CoV,human
R709 T715 T716 arg1Of SARS-CoV,","
R710 T719 T716 arg2Of CoVs,","
R711 T719 T717 arg1Of CoVs,bat
R712 T719 T718 arg1Of CoVs,SARS-like
R713 T721 T720 arg1Of and,","
R714 T716 T721 arg1Of ",",and
R715 T725 T721 arg2Of while,and
R716 T725 T722 arg1Of while,pangolin
R717 T725 T723 arg1Of while,SARS-like
R718 T725 T724 arg1Of while,CoV
R719 T702 T726 arg1Of site,might
R720 T727 T726 arg2Of be,might
R721 T690 T726 modOf subunits,might
R722 T702 T727 arg1Of site,be
R723 T728 T727 arg2Of present,be
R724 T702 T728 arg1Of site,present
R725 T728 T729 arg1Of present,in
R726 T731 T729 arg2Of species,in
R727 T731 T730 arg1Of species,other
R728 T727 T732 arg1Of be,[
R729 T733 T732 arg2Of 3,[
R730 T734 T732 arg3Of ],[
R731 T760 T735 arg1Of take,After
R732 T737 T735 arg2Of introduction,After
R733 T737 T736 arg1Of introduction,the
R734 T737 T738 arg1Of introduction,of
R735 T739 T738 arg2Of mutation,of
R736 T737 T740 arg1Of introduction,to
R737 T747 T740 arg2Of site,to
R738 T747 T741 arg1Of site,the
R739 T747 T742 arg1Of site,residue
R740 T747 T743 arg1Of site,insertion
R741 T743 T744 arg1Of insertion,and
R742 T745 T744 arg2Of furin,and
R743 T747 T745 arg1Of site,furin
R744 T747 T746 arg1Of site,cleavage
R745 T760 T748 arg1Of take,","
R746 T751 T749 arg1Of cleavage,the
R747 T751 T750 arg1Of cleavage,S1/S2
R748 T751 T752 arg1Of cleavage,of
R749 T756 T752 arg2Of S,of
R750 T756 T753 arg1Of S,the
R751 T756 T754 arg1Of S,SARS-CoV
R752 T756 T755 arg1Of S,2
R753 T751 T757 arg1Of cleavage,did
R754 T760 T757 arg2Of take,did
R755 T760 T758 arg1Of take,not
R756 T760 T759 arg1Of take,longer
R757 T751 T760 arg1Of cleavage,take
R758 T761 T760 arg2Of place,take
R759 T774 T762 arg1Of remained,However
R760 T774 T763 arg1Of remained,","
R761 T768 T764 arg1Of entry,the
R762 T768 T765 arg1Of entry,SARS-CoV
R763 T768 T766 arg1Of entry,2
R764 T768 T767 arg1Of entry,S
R765 T768 T769 arg2Of entry,raised
R766 T769 T770 arg1Of raised,for
R767 T772 T770 arg2Of cells,for
R768 T772 T771 arg1Of cells,VeroE6
R769 T768 T773 arg1Of entry,and
R785 T789 T788 arg1Of transmissibility,SARS-CoV2
R786 T789 T790 arg1Of transmissibility,does
R787 T792 T790 arg2Of depend,does
R788 T792 T791 arg1Of depend,not
R789 T789 T792 arg1Of transmissibility,depend
R790 T792 T793 arg1Of depend,on
R791 T796 T793 arg2Of cleavage,on
R792 T796 T794 arg1Of cleavage,the
R793 T796 T795 arg1Of cleavage,S1/S2
R794 T800 T797 arg1Of site,A
R795 T800 T798 arg1Of site,polybasic
R796 T800 T799 arg1Of site,cleavage
R797 T800 T801 arg1Of site,explains
R798 T803 T801 arg2Of virus,explains
R799 T803 T802 arg1Of virus,a
R800 T803 T804 arg1Of virus,that
R801 T803 T805 arg1Of virus,is
R802 T806 T805 arg2Of highly-pathogenic,is
R803 T803 T806 arg1Of virus,highly-pathogenic
R804 T806 T807 arg1Of highly-pathogenic,for
R805 T808 T807 arg2Of humans,for
R806 T801 T809 arg1Of explains,while
R807 T811 T809 arg2Of is,while
R808 T810 T811 arg1Of it,is
R809 T812 T811 arg2Of low-pathogenic,is
R810 T810 T812 arg1Of it,low-pathogenic
R811 T812 T813 arg1Of low-pathogenic,for
R812 T815 T813 arg2Of species,for
R813 T815 T814 arg1Of species,other
R814 T833 T816 arg1Of developed,For
R815 T817 T816 arg2Of example,For
R816 T833 T818 arg1Of developed,","
R817 T822 T819 arg2Of tools,using
R818 T833 T819 modOf developed,using
R819 T821 T820 arg1Of genetic,reverse
R820 T822 T821 arg1Of tools,genetic
R821 T833 T823 arg1Of developed,","
R822 T827 T824 arg1Of type,an
R823 T827 T825 arg1Of type,avian
R824 T827 T826 arg1Of type,paramyxovirus
R825 T827 T828 arg1Of type,7
R826 T827 T829 arg1Of type,(
R827 T830 T829 arg2Of APMV-7,(
R828 T831 T829 arg3Of ),(
R829 T827 T832 arg1Of type,was
R830 T833 T832 arg2Of developed,was
R831 T827 T833 arg2Of type,developed
R856 T858 T857 arg1Of formation,syncytium
R857 T854 T859 arg1Of increased,in
R858 T861 T859 arg2Of cultures,in
R859 T861 T860 arg1Of cultures,cell
R860 T871 T862 arg1Of exhibit,However
R861 T871 T863 arg1Of exhibit,","
R862 T864 T865 arg2Of chicken,exposed
R863 T865 T866 arg1Of exposed,to
R864 T868 T866 arg2Of virus,to
R865 T868 T867 arg1Of virus,the
R866 T864 T869 arg1Of chicken,did
R867 T871 T869 arg2Of exhibit,did
R868 T871 T870 arg1Of exhibit,not
R869 T864 T871 arg1Of chicken,exhibit
R870 T872 T871 arg2Of infection,exhibit

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T6 1109-1128 http://purl.obolibrary.org/obo/GO_0006949 denotes syncytium formation
T7 1119-1128 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T22 110-121 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T23 126-137 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T24 607-612 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T25 638-643 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T26 1007-1014 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 1132-1136 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 189-199 Disease denotes SARS-CoV 2 http://purl.obolibrary.org/obo/MONDO_0100096
T34 268-278 Disease denotes SARS-CoV 2 http://purl.obolibrary.org/obo/MONDO_0100096
T35 304-312 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 318-322 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 347-351 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 517-527 Disease denotes SARS-CoV 2 http://purl.obolibrary.org/obo/MONDO_0100096
T39 570-580 Disease denotes SARS-CoV 2 http://purl.obolibrary.org/obo/MONDO_0100096
T40 693-702 Disease denotes SARS-CoV2 http://purl.obolibrary.org/obo/MONDO_0100096
T41 1201-1210 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T4 1109-1128 http://purl.obolibrary.org/obo/GO_0006949 denotes syncytium formation
T5 1119-1128 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 1109-1128 http://purl.obolibrary.org/obo/GO_0006949 denotes syncytium formation
T5 1119-1128 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 0-30 Sentence denotes 3.1.1 Polybasic cleavage site
T41 31-202 Sentence denotes As evidenced by sequence analysis, there is a residue insertion formed of four amino acids (12 nucleotides) at the boundary between S1 and S2 subunits of the SARS-CoV 2 S.
T42 203-405 Sentence denotes It defines a polybasic furin cleavage site of RRAR for the human SARS-CoV 2 that was absent in human SARS-CoV, bat SARS-like CoVs, and pangolin SARS-like CoV while might be present in other species [3].
T43 406-556 Sentence denotes After the introduction of mutation to the residue insertion and furin cleavage site, the S1/S2 cleavage of the SARS-CoV 2 S did not longer take place.
T44 557-667 Sentence denotes However, the SARS-CoV 2 S entry raised for VeroE6 cells and remained high in BHK cells that express human ACE.
T45 668-758 Sentence denotes Therefore, it seems that SARS-CoV2 transmissibility does not depend on the S1/S2 cleavage.
T46 759-884 Sentence denotes A polybasic cleavage site explains a virus that is highly-pathogenic for humans while it is low-pathogenic for other species.
T47 885-1033 Sentence denotes For example, using reverse genetic tools, an avian paramyxovirus type 7 (APMV-7) was developed by mutating the fusion (F) protein cleavage site [4].
T48 1034-1146 Sentence denotes The constructed APMV-7 showed furin cleavage and increased replication and syncytium formation in cell cultures.
T49 1147-1211 Sentence denotes However, chicken exposed to the virus did not exhibit infection.

2_test

Id Subject Object Predicate Lexical cue
32413736-22258248-48112966 1030-1031 22258248 denotes 4
T44212 1030-1031 22258248 denotes 4