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PMC:7205724 / 11503-12516
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
361 | 103-112 | Species | denotes | 2019-nCoV | Tax:2697049 |
380 | 211-214 | Gene | denotes | Rp3 | Gene:22924 |
381 | 405-408 | Gene | denotes | Rp3 | Gene:22924 |
382 | 417-420 | Gene | denotes | Rp3 | Gene:22924 |
383 | 776-777 | Gene | denotes | S | Gene:43740568 |
384 | 701-702 | Gene | denotes | S | Gene:43740568 |
385 | 243-256 | Species | denotes | coronaviruses | Tax:11118 |
386 | 315-323 | Species | denotes | SARS-CoV | Tax:694009 |
387 | 375-396 | Species | denotes | SARS-like coronavirus | Tax:694009 |
388 | 413-416 | Species | denotes | CoV | Tax:11118 |
389 | 473-480 | Species | denotes | patient | Tax:9606 |
390 | 505-514 | Species | denotes | 2019-nCoV | Tax:2697049 |
391 | 587-604 | Species | denotes | novel coronavirus | Tax:2697049 |
392 | 612-633 | Species | denotes | SARS-like coronavirus | Tax:694009 |
393 | 718-727 | Species | denotes | 2019-nCoV | Tax:2697049 |
394 | 803-807 | Species | denotes | CoVs | Tax:11118 |
395 | 817-826 | Species | denotes | SARSr-CoV | Tax:694009 |
396 | 910-919 | Species | denotes | 2019-nCoV | Tax:2697049 |
397 | 966-974 | Species | denotes | SARS-CoV | Tax:694009 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T84 | 27-33 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
T85 | 170-176 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
T86 | 516-519 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T87 | 568-579 | Body_part | denotes | nucleotides | http://purl.org/sig/ont/fma/fma82740 |
T88 | 703-710 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T89 | 778-785 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T71 | 315-323 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T72 | 375-379 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T73 | 486-490 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T74 | 612-616 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T75 | 793-797 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T76 | 966-974 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T125 | 113-118 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T126 | 124-127 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T127 | 158-162 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T128 | 191-192 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T129 | 199-202 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T130 | 471-472 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T131 | 665-669 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T132 | 728-731 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T133 | 732-733 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T134 | 789-792 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T135 | 1008-1012 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T122 | 410-412 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T123 | 568-579 | Chemical | denotes | nucleotides | http://purl.obolibrary.org/obo/CHEBI_36976 |
T124 | 703-710 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T125 | 778-785 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sample-MedDRA
Id | Subject | Object | Predicate | Lexical cue | meddra_id |
---|---|---|---|---|---|
T8 | 432-454 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | bronchoalveolar lavage | http://purl.bioontology.org/ontology/MEDDRA/10049413 |
LitCovid-sample-PD-IDO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T50 | 113-118 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T83 | 516-519 | Chemical | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 |
T84 | 568-579 | Chemical | denotes | nucleotides | http://purl.obolibrary.org/obo/CHEBI_36976 |
T85 | 703-710 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T86 | 778-785 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T86 | 103-112 | Species | denotes | 2019-nCoV | NCBItxid:2697049 |
T87 | 158-162 | Species | denotes | bats | NCBItxid:9397 |
T88 | 199-202 | Species | denotes | bat | NCBItxid:9397 |
T89 | 315-323 | Species | denotes | SARS-CoV | NCBItxid:694009 |
T90 | 375-396 | Species | denotes | SARS-like coronavirus | NCBItxid:694009 |
T91 | 486-490 | Species | denotes | SARS | NCBItxid:694009 |
T92 | 505-514 | Species | denotes | 2019-nCoV | NCBItxid:2697049 |
T93 | 612-633 | Species | denotes | SARS-like coronavirus | NCBItxid:694009 |
T94 | 665-669 | Species | denotes | bats | NCBItxid:9397 |
T95 | 718-727 | Species | denotes | 2019-nCoV | NCBItxid:2697049 |
T96 | 789-807 | Species | denotes | bat SARS-like CoVs | NCBItxid:1508227 |
T97 | 817-826 | Species | denotes | SARSr-CoV | NCBItxid:694009 |
T98 | 910-919 | Species | denotes | 2019-nCoV | NCBItxid:2697049 |
T99 | 966-974 | Species | denotes | SARS-CoV | NCBItxid:694009 |
T100 | 1008-1012 | Species | denotes | bats | NCBItxid:9397 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T97 | 0-169 | Sentence | denotes | 4.1.2.1 Hypothesis: whole-genome sequencing and phylogenetic analysis shed light on the origin of the 2019-nCoV virus – It has been probably introduced from bats to men |
T98 | 170-346 | Sentence | denotes | Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003. |
T99 | 347-427 | Sentence | denotes | Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12]. |
T100 | 428-515 | Sentence | denotes | The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV. |
T101 | 516-681 | Sentence | denotes | RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14]. |
T102 | 682-859 | Sentence | denotes | In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3]. |
T103 | 860-1013 | Sentence | denotes | Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats. |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
361 | 103-112 | Species | denotes | 2019-nCoV | Tax:2697049 |
380 | 211-214 | Gene | denotes | Rp3 | Gene:22924 |
385 | 243-256 | Species | denotes | coronaviruses | Tax:11118 |
386 | 315-323 | Species | denotes | SARS-CoV | Tax:694009 |
387 | 375-396 | Species | denotes | SARS-like coronavirus | Tax:694009 |
381 | 405-408 | Gene | denotes | Rp3 | Gene:22924 |
388 | 413-416 | Species | denotes | CoV | Tax:11118 |
382 | 417-420 | Gene | denotes | Rp3 | Gene:22924 |
389 | 473-480 | Species | denotes | patient | Tax:9606 |
390 | 505-514 | Species | denotes | 2019-nCoV | Tax:2697049 |
391 | 587-604 | Species | denotes | novel coronavirus | Tax:2697049 |
392 | 612-633 | Species | denotes | SARS-like coronavirus | Tax:694009 |
384 | 701-702 | Gene | denotes | S | Gene:43740568 |
393 | 718-727 | Species | denotes | 2019-nCoV | Tax:2697049 |
383 | 776-777 | Gene | denotes | S | Gene:43740568 |
394 | 803-807 | Species | denotes | CoVs | Tax:11118 |
395 | 817-826 | Species | denotes | SARSr-CoV | Tax:694009 |
396 | 910-919 | Species | denotes | 2019-nCoV | Tax:2697049 |
397 | 966-974 | Species | denotes | SARS-CoV | Tax:694009 |
LitCovid-sample-UniProt
Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
---|---|---|---|---|---|
T1233 | 701-710 | Protein | denotes | S protein | https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9 |
T1266 | 776-785 | Protein | denotes | S protein | https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9 |
LitCovid-sample-Enju
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T58124 | 0-7 | CD | denotes | 4.1.2.1 |
T5376 | 9-19 | NN | denotes | Hypothesis |
T34741 | 19-20 | -COLON- | denotes | : |
T62090 | 21-33 | JJ | denotes | whole-genome |
T52998 | 34-44 | NN | denotes | sequencing |
T20323 | 45-48 | CC | denotes | and |
T7728 | 49-61 | JJ | denotes | phylogenetic |
T67504 | 62-70 | NN | denotes | analysis |
T76343 | 71-75 | VBD | denotes | shed |
T36219 | 76-81 | NN | denotes | light |
T40337 | 82-84 | IN | denotes | on |
T54452 | 85-88 | DT | denotes | the |
T33856 | 89-95 | NN | denotes | origin |
T37831 | 96-98 | IN | denotes | of |
T28355 | 99-102 | DT | denotes | the |
T31802 | 103-112 | JJ | denotes | 2019-nCoV |
T95515 | 113-118 | NN | denotes | virus |
T64814 | 119-120 | VBP | denotes | – |
T87875 | 121-123 | PRP | denotes | It |
T46333 | 124-127 | VBZ | denotes | has |
T28188 | 128-132 | VBN | denotes | been |
T22492 | 133-141 | RB | denotes | probably |
T62169 | 142-152 | VBN | denotes | introduced |
T13328 | 153-157 | IN | denotes | from |
T96521 | 158-162 | NNS | denotes | bats |
T30811 | 163-165 | TO | denotes | to |
T52514 | 166-169 | NNS | denotes | men |
T28843 | 170-176 | NN | denotes | Genome |
T46450 | 177-187 | NN | denotes | sequencing |
T27748 | 188-190 | IN | denotes | of |
T27295 | 191-192 | DT | denotes | a |
T62671 | 193-198 | JJ | denotes | fecal |
T93555 | 199-202 | NN | denotes | bat |
T52375 | 203-209 | NN | denotes | sample |
T30106 | 209-210 | -COMMA- | denotes | , |
T79240 | 211-214 | NN | denotes | Rp3 |
T51658 | 214-215 | -COMMA- | denotes | , |
T48337 | 216-221 | MD | denotes | could |
T23533 | 222-228 | VB | denotes | detect |
T45372 | 229-231 | DT | denotes | an |
T48569 | 232-239 | NN | denotes | isolate |
T20680 | 240-242 | IN | denotes | of |
T19302 | 243-256 | NNS | denotes | coronaviruses |
T18234 | 256-257 | -COMMA- | denotes | , |
T77212 | 258-263 | WDT | denotes | which |
T37427 | 264-267 | VBD | denotes | was |
T90838 | 268-274 | RB | denotes | almost |
T69281 | 275-284 | JJ | denotes | identical |
T30703 | 285-287 | TO | denotes | to |
T45933 | 288-291 | DT | denotes | the |
T53102 | 292-301 | JJ | denotes | causative |
T21161 | 302-307 | NN | denotes | agent |
T31651 | 308-310 | IN | denotes | of |
T24092 | 311-314 | DT | denotes | the |
T76932 | 315-323 | JJ | denotes | SARS-CoV |
T42133 | 324-332 | NN | denotes | outbreak |
T26029 | 333-335 | IN | denotes | of |
T7676 | 336-345 | CD | denotes | 2002–2003 |
T55417 | 347-352 | RB | denotes | Hence |
T40490 | 352-353 | -COMMA- | denotes | , |
T99577 | 354-356 | PRP | denotes | it |
T85900 | 357-365 | VBD | denotes | attained |
T84303 | 366-369 | DT | denotes | the |
T99794 | 370-374 | NN | denotes | name |
T28667 | 375-384 | JJ | denotes | SARS-like |
T13194 | 385-396 | NN | denotes | coronavirus |
T40481 | 397-404 | NN | denotes | isolate |
T51053 | 405-408 | NN | denotes | Rp3 |
T84085 | 409-410 | -LRB- | denotes | ( |
T37600 | 410-416 | NN | denotes | SL-CoV |
T96263 | 417-420 | NN | denotes | Rp3 |
T15140 | 420-421 | -RRB- | denotes | ) |
T87895 | 422-423 | -LRB- | denotes | [ |
T40198 | 423-425 | CD | denotes | 12 |
T79787 | 425-426 | -RRB- | denotes | ] |
T87849 | 428-431 | DT | denotes | The |
T82417 | 432-447 | JJ | denotes | bronchoalveolar |
T31054 | 448-454 | NN | denotes | lavage |
T37752 | 455-460 | NN | denotes | fluid |
T74238 | 461-462 | -LRB- | denotes | ( |
T3228 | 462-466 | NN | denotes | BALF |
T70930 | 466-467 | -RRB- | denotes | ) |
T9092 | 468-470 | IN | denotes | of |
T49696 | 471-472 | DT | denotes | a |
T42278 | 473-480 | NN | denotes | patient |
T77065 | 481-485 | IN | denotes | with |
T56445 | 486-490 | NNS | denotes | SARS |
T91231 | 491-500 | VBD | denotes | contained |
T55260 | 501-504 | DT | denotes | the |
T14876 | 505-514 | NN | denotes | 2019-nCoV |
T41253 | 516-519 | NN | denotes | RNA |
T76927 | 520-530 | NN | denotes | sequencing |
T21523 | 531-536 | MD | denotes | could |
T61033 | 537-543 | VB | denotes | reveal |
T57735 | 544-549 | RB | denotes | about |
T17027 | 550-552 | CD | denotes | 90 |
T88762 | 552-553 | NN | denotes | % |
T56862 | 554-564 | NN | denotes | similarity |
T58084 | 565-567 | IN | denotes | in |
T42893 | 568-579 | NNS | denotes | nucleotides |
T28737 | 580-582 | IN | denotes | of |
T98581 | 583-586 | DT | denotes | the |
T54378 | 587-592 | JJ | denotes | novel |
T41408 | 593-604 | NN | denotes | coronavirus |
T8820 | 605-608 | CC | denotes | and |
T82233 | 609-611 | IN | denotes | of |
T87395 | 612-621 | JJ | denotes | SARS-like |
T25315 | 622-633 | NN | denotes | coronavirus |
T40001 | 634-638 | WDT | denotes | that |
T50563 | 639-642 | VBD | denotes | had |
T73327 | 643-653 | RB | denotes | previously |
T43308 | 654-661 | VBN | denotes | related |
T87528 | 662-664 | TO | denotes | to |
T18784 | 665-669 | NNS | denotes | bats |
T21998 | 670-671 | -LRB- | denotes | [ |
T45109 | 671-673 | CD | denotes | 13 |
T62980 | 673-674 | -RRB- | denotes | ] |
T34259 | 674-675 | -COMMA- | denotes | , |
T56176 | 676-677 | -LRB- | denotes | [ |
T43975 | 677-679 | CD | denotes | 14 |
T89437 | 679-680 | -RRB- | denotes | ] |
T32040 | 682-684 | IN | denotes | In |
T92103 | 685-695 | JJ | denotes | particular |
T46259 | 695-696 | -COMMA- | denotes | , |
T37699 | 697-700 | DT | denotes | the |
T72545 | 701-702 | NN | denotes | S |
T24131 | 703-710 | NN | denotes | protein |
T44437 | 711-713 | IN | denotes | of |
T20264 | 714-717 | DT | denotes | the |
T45006 | 718-727 | NN | denotes | 2019-nCoV |
T85613 | 728-731 | VBZ | denotes | has |
T77820 | 732-733 | DT | denotes | a |
T51362 | 734-738 | JJ | denotes | high |
T86629 | 739-747 | NN | denotes | sequence |
T85333 | 748-756 | NN | denotes | identity |
T4126 | 757-759 | IN | denotes | of |
T23106 | 760-765 | CD | denotes | 80–98 |
T47986 | 765-766 | NN | denotes | % |
T62529 | 767-771 | IN | denotes | with |
T47180 | 772-775 | DT | denotes | the |
T64906 | 776-777 | NN | denotes | S |
T55893 | 778-785 | NN | denotes | protein |
T84276 | 786-788 | IN | denotes | of |
T27337 | 789-792 | NN | denotes | bat |
T65227 | 793-802 | JJ | denotes | SARS-like |
T48841 | 803-807 | NNS | denotes | CoVs |
T43941 | 807-808 | -COMMA- | denotes | , |
T76487 | 809-813 | JJ | denotes | such |
T69082 | 814-816 | IN | denotes | as |
T24341 | 817-826 | JJ | denotes | SARSr-CoV |
T77949 | 827-832 | NN | denotes | ZXC21 |
T33016 | 833-834 | NNP | denotes | S |
T45981 | 834-835 | -COMMA- | denotes | , |
T58714 | 836-840 | NNP | denotes | ZC45 |
T47242 | 841-842 | NNP | denotes | S |
T24128 | 842-843 | -COMMA- | denotes | , |
T33217 | 844-847 | CC | denotes | and |
T49688 | 848-854 | NN | denotes | RaTG13 |
T48117 | 855-856 | -LRB- | denotes | [ |
T8349 | 856-857 | CD | denotes | 3 |
T82587 | 857-858 | -RRB- | denotes | ] |
T26826 | 860-868 | RB | denotes | Moreover |
T40424 | 868-869 | -COMMA- | denotes | , |
T82603 | 870-872 | IN | denotes | in |
T83961 | 873-885 | JJ | denotes | phylogenomic |
T26439 | 886-891 | NNS | denotes | trees |
T36143 | 891-892 | -COMMA- | denotes | , |
T1931 | 893-901 | NNS | denotes | branches |
T94548 | 902-905 | IN | denotes | for |
T9564 | 906-909 | DT | denotes | the |
T82190 | 910-919 | NN | denotes | 2019-nCoV |
T51998 | 920-923 | VBP | denotes | are |
T48884 | 924-926 | IN | denotes | of |
T84416 | 927-934 | JJR | denotes | greater |
T46091 | 935-941 | NN | denotes | length |
T44026 | 942-946 | IN | denotes | than |
T19745 | 947-952 | DT | denotes | those |
T66697 | 953-956 | IN | denotes | for |
T66659 | 957-960 | DT | denotes | the |
T22981 | 961-965 | CD | denotes | 2003 |
T47496 | 966-974 | NN | denotes | SARS-CoV |
T18117 | 974-975 | -COMMA- | denotes | , |
T90160 | 976-979 | CC | denotes | and |
T86256 | 980-989 | RB | denotes | therefore |
T89702 | 990-994 | RBR | denotes | more |
T19375 | 995-1004 | JJ | denotes | favorable |
T58982 | 1005-1007 | TO | denotes | to |
T17546 | 1008-1012 | NNS | denotes | bats |
R9155 | T33856 | T37831 | arg1Of | origin,of |
R34142 | T95515 | T37831 | arg2Of | virus,of |
R11743 | T95515 | T28355 | arg1Of | virus,the |
R25437 | T95515 | T31802 | arg1Of | virus,2019-nCoV |
R28087 | T5376 | T64814 | arg1Of | Hypothesis,– |
R18514 | T62169 | T64814 | arg2Of | introduced,– |
R46916 | T87875 | T46333 | arg1Of | It,has |
R93896 | T37752 | T9092 | arg1Of | fluid,of |
R25292 | T42278 | T9092 | arg2Of | patient,of |
R26327 | T42278 | T49696 | arg1Of | patient,a |
R92357 | T42278 | T77065 | arg1Of | patient,with |
R79425 | T56445 | T77065 | arg2Of | SARS,with |
R79797 | T37752 | T91231 | arg1Of | fluid,contained |
R33601 | T14876 | T91231 | arg2Of | 2019-nCoV,contained |
R47706 | T14876 | T55260 | arg1Of | 2019-nCoV,the |
R82198 | T76927 | T41253 | arg1Of | sequencing,RNA |
R9633 | T55893 | T62529 | arg2Of | protein,with |
R8236 | T55893 | T47180 | arg1Of | protein,the |
R37164 | T55893 | T64906 | arg1Of | protein,S |
R27603 | T55893 | T84276 | arg1Of | protein,of |
R84379 | T48841 | T84276 | arg2Of | CoVs,of |
R59931 | T48841 | T27337 | arg1Of | CoVs,bat |
R85967 | T48841 | T65227 | arg1Of | CoVs,SARS-like |
R99461 | T48841 | T43941 | arg1Of | CoVs,"," |
R20816 | T69082 | T76487 | arg1Of | as,such |
R77868 | T48841 | T69082 | arg1Of | CoVs,as |
R78999 | T5376 | T58124 | arg1Of | Hypothesis,4.1.2.1 |
R51882 | T5376 | T34741 | arg1Of | Hypothesis,: |
R48542 | T76343 | T34741 | arg2Of | shed,: |
R32918 | T52998 | T62090 | arg1Of | sequencing,whole-genome |
R56076 | T52998 | T20323 | arg1Of | sequencing,and |
R68735 | T67504 | T20323 | arg2Of | analysis,and |
R11336 | T67504 | T7728 | arg1Of | analysis,phylogenetic |
R90147 | T20323 | T76343 | arg1Of | and,shed |
R93727 | T36219 | T76343 | arg2Of | light,shed |
R47808 | T76343 | T40337 | arg1Of | shed,on |
R66754 | T33856 | T40337 | arg2Of | origin,on |
R25360 | T33856 | T54452 | arg1Of | origin,the |
R78116 | T62169 | T46333 | arg2Of | introduced,has |
R79879 | T87875 | T28188 | arg1Of | It,been |
R23970 | T62169 | T28188 | arg2Of | introduced,been |
R11663 | T62169 | T22492 | arg1Of | introduced,probably |
R22009 | T87875 | T62169 | arg2Of | It,introduced |
R21833 | T62169 | T13328 | arg1Of | introduced,from |
R9730 | T96521 | T13328 | arg2Of | bats,from |
R43289 | T96521 | T30811 | arg1Of | bats,to |
R53501 | T52514 | T30811 | arg2Of | men,to |
R14066 | T46450 | T28843 | arg1Of | sequencing,Genome |
R80891 | T46450 | T27748 | arg1Of | sequencing,of |
R29083 | T52375 | T27748 | arg2Of | sample,of |
R55505 | T52375 | T27295 | arg1Of | sample,a |
R70294 | T52375 | T62671 | arg1Of | sample,fecal |
R95907 | T52375 | T93555 | arg1Of | sample,bat |
R77496 | T52375 | T30106 | arg1Of | sample,"," |
R70744 | T79240 | T30106 | arg2Of | Rp3,"," |
R84750 | T23533 | T51658 | arg1Of | detect,"," |
R22256 | T46450 | T48337 | arg1Of | sequencing,could |
R84362 | T23533 | T48337 | arg2Of | detect,could |
R13690 | T46450 | T23533 | arg1Of | sequencing,detect |
R81506 | T48569 | T23533 | arg2Of | isolate,detect |
R60741 | T48569 | T45372 | arg1Of | isolate,an |
R29203 | T48569 | T20680 | arg1Of | isolate,of |
R55007 | T19302 | T20680 | arg2Of | coronaviruses,of |
R77595 | T48569 | T18234 | arg1Of | isolate,"," |
R74345 | T48569 | T77212 | arg1Of | isolate,which |
R82277 | T48569 | T37427 | arg1Of | isolate,was |
R49235 | T69281 | T37427 | arg2Of | identical,was |
R15724 | T69281 | T90838 | arg1Of | identical,almost |
R26850 | T48569 | T69281 | arg1Of | isolate,identical |
R99770 | T69281 | T30703 | arg1Of | identical,to |
R99853 | T21161 | T30703 | arg2Of | agent,to |
R34313 | T21161 | T45933 | arg1Of | agent,the |
R90071 | T21161 | T53102 | arg1Of | agent,causative |
R83498 | T21161 | T31651 | arg1Of | agent,of |
R46891 | T42133 | T31651 | arg2Of | outbreak,of |
R27084 | T42133 | T24092 | arg1Of | outbreak,the |
R95994 | T42133 | T76932 | arg1Of | outbreak,SARS-CoV |
R47434 | T42133 | T26029 | arg1Of | outbreak,of |
R97280 | T7676 | T26029 | arg2Of | 2002–2003,of |
R11853 | T85900 | T55417 | arg1Of | attained,Hence |
R54546 | T85900 | T40490 | arg1Of | attained,"," |
R36475 | T99577 | T85900 | arg1Of | it,attained |
R69085 | T51053 | T85900 | arg2Of | Rp3,attained |
R2126 | T51053 | T84303 | arg1Of | Rp3,the |
R94363 | T51053 | T99794 | arg1Of | Rp3,name |
R84505 | T51053 | T28667 | arg1Of | Rp3,SARS-like |
R51413 | T51053 | T13194 | arg1Of | Rp3,coronavirus |
R38349 | T51053 | T40481 | arg1Of | Rp3,isolate |
R28069 | T51053 | T84085 | arg1Of | Rp3,( |
R49507 | T96263 | T84085 | arg2Of | Rp3,( |
R98383 | T15140 | T84085 | arg3Of | ),( |
R43398 | T96263 | T37600 | arg1Of | Rp3,SL-CoV |
R58949 | T85900 | T87895 | arg1Of | attained,[ |
R31914 | T40198 | T87895 | arg2Of | 12,[ |
R93865 | T79787 | T87895 | arg3Of | ],[ |
R4610 | T37752 | T87849 | arg1Of | fluid,The |
R17928 | T37752 | T82417 | arg1Of | fluid,bronchoalveolar |
R63818 | T37752 | T31054 | arg1Of | fluid,lavage |
R54661 | T37752 | T74238 | arg1Of | fluid,( |
R50117 | T3228 | T74238 | arg2Of | BALF,( |
R11221 | T70930 | T74238 | arg3Of | ),( |
R27740 | T76927 | T21523 | arg1Of | sequencing,could |
R2092 | T61033 | T21523 | arg2Of | reveal,could |
R5221 | T76927 | T61033 | arg1Of | sequencing,reveal |
R54859 | T56862 | T61033 | arg2Of | similarity,reveal |
R81820 | T17027 | T57735 | arg1Of | 90,about |
R26135 | T56862 | T17027 | arg1Of | similarity,90 |
R37944 | T17027 | T88762 | arg1Of | 90,% |
R19722 | T56862 | T58084 | arg1Of | similarity,in |
R26450 | T42893 | T58084 | arg2Of | nucleotides,in |
R85800 | T42893 | T28737 | arg1Of | nucleotides,of |
R6863 | T41408 | T28737 | arg2Of | coronavirus,of |
R72528 | T41408 | T98581 | arg1Of | coronavirus,the |
R98967 | T41408 | T54378 | arg1Of | coronavirus,novel |
R17590 | T58084 | T8820 | arg1Of | in,and |
R49869 | T82233 | T8820 | arg2Of | of,and |
R76106 | T56862 | T82233 | arg1Of | similarity,of |
R40705 | T25315 | T82233 | arg2Of | coronavirus,of |
R21771 | T25315 | T87395 | arg1Of | coronavirus,SARS-like |
R89495 | T25315 | T40001 | arg1Of | coronavirus,that |
R12805 | T25315 | T50563 | arg1Of | coronavirus,had |
R43366 | T43308 | T50563 | arg2Of | related,had |
R19626 | T43308 | T73327 | arg1Of | related,previously |
R71640 | T25315 | T43308 | arg1Of | coronavirus,related |
R98847 | T43308 | T87528 | arg1Of | related,to |
R56090 | T18784 | T87528 | arg2Of | bats,to |
R53709 | T18784 | T21998 | arg1Of | bats,[ |
R55235 | T45109 | T21998 | arg2Of | 13,[ |
R4872 | T62980 | T21998 | arg3Of | ],[ |
R85928 | T43308 | T34259 | arg1Of | related,"," |
R66763 | T43308 | T56176 | arg1Of | related,[ |
R82331 | T43975 | T56176 | arg2Of | 14,[ |
R65672 | T89437 | T56176 | arg3Of | ],[ |
R60898 | T85613 | T32040 | arg1Of | has,In |
R8931 | T92103 | T32040 | arg2Of | particular,In |
R37482 | T85613 | T46259 | arg1Of | has,"," |
R69236 | T24131 | T37699 | arg1Of | protein,the |
R90434 | T24131 | T72545 | arg1Of | protein,S |
R42614 | T24131 | T44437 | arg1Of | protein,of |
R23596 | T45006 | T44437 | arg2Of | 2019-nCoV,of |
R11370 | T45006 | T20264 | arg1Of | 2019-nCoV,the |
R80817 | T24131 | T85613 | arg1Of | protein,has |
R49961 | T85333 | T85613 | arg2Of | identity,has |
R54652 | T85333 | T77820 | arg1Of | identity,a |
R29265 | T85333 | T51362 | arg1Of | identity,high |
R4874 | T85333 | T86629 | arg1Of | identity,sequence |
R2751 | T85333 | T4126 | arg1Of | identity,of |
R99494 | T47986 | T4126 | arg2Of | %,of |
R81734 | T47986 | T23106 | arg1Of | %,80–98 |
R65938 | T85613 | T62529 | arg1Of | has,with |
R59047 | T33217 | T69082 | arg2Of | and,as |
R62932 | T33016 | T24341 | arg1Of | S,SARSr-CoV |
R11481 | T33016 | T77949 | arg1Of | S,ZXC21 |
R38926 | T33016 | T45981 | arg1Of | S,"," |
R47300 | T47242 | T45981 | arg2Of | S,"," |
R77326 | T47242 | T58714 | arg1Of | S,ZC45 |
R75080 | T33217 | T24128 | arg1Of | and,"," |
R91783 | T45981 | T33217 | arg1Of | ",",and |
R80254 | T49688 | T33217 | arg2Of | RaTG13,and |
R54614 | T49688 | T48117 | arg1Of | RaTG13,[ |
R65396 | T8349 | T48117 | arg2Of | 3,[ |
R80187 | T82587 | T48117 | arg3Of | ],[ |
R79793 | T51998 | T26826 | arg1Of | are,Moreover |
R43834 | T51998 | T40424 | arg1Of | are,"," |
R27649 | T51998 | T82603 | arg1Of | are,in |
R96220 | T26439 | T82603 | arg2Of | trees,in |
R84762 | T26439 | T83961 | arg1Of | trees,phylogenomic |
R83564 | T51998 | T36143 | arg1Of | are,"," |
R35953 | T1931 | T94548 | arg1Of | branches,for |
R50313 | T82190 | T94548 | arg2Of | 2019-nCoV,for |
R39618 | T82190 | T9564 | arg1Of | 2019-nCoV,the |
R26497 | T1931 | T51998 | arg1Of | branches,are |
R13764 | T19375 | T51998 | arg2Of | favorable,are |
R81075 | T51998 | T48884 | arg1Of | are,of |
R51585 | T46091 | T48884 | arg2Of | length,of |
R73778 | T46091 | T84416 | arg1Of | length,greater |
R53908 | T51998 | T44026 | arg1Of | are,than |
R52362 | T19745 | T44026 | arg2Of | those,than |
R18993 | T19745 | T66697 | arg1Of | those,for |
R89736 | T47496 | T66697 | arg2Of | SARS-CoV,for |
R79769 | T47496 | T66659 | arg1Of | SARS-CoV,the |
R19666 | T47496 | T22981 | arg1Of | SARS-CoV,2003 |
R93374 | T51998 | T18117 | arg1Of | are,"," |
R50127 | T86256 | T90160 | arg1Of | therefore,and |
R3485 | T19375 | T86256 | arg1Of | favorable,therefore |
R2351 | T19375 | T89702 | arg1Of | favorable,more |
R91193 | T1931 | T19375 | arg1Of | branches,favorable |
R80199 | T19375 | T58982 | arg1Of | favorable,to |
R45246 | T17546 | T58982 | arg2Of | bats,to |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T84 | 27-33 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
T85 | 170-176 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
T86 | 516-519 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T87 | 568-579 | Body_part | denotes | nucleotides | http://purl.org/sig/ont/fma/fma82740 |
T88 | 703-710 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T89 | 778-785 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T68 | 315-323 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T69 | 375-379 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T70 | 486-490 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T71 | 612-616 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T72 | 793-797 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T73 | 966-974 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T97 | 0-169 | Sentence | denotes | 4.1.2.1 Hypothesis: whole-genome sequencing and phylogenetic analysis shed light on the origin of the 2019-nCoV virus – It has been probably introduced from bats to men |
T98 | 170-346 | Sentence | denotes | Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003. |
T99 | 347-427 | Sentence | denotes | Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12]. |
T100 | 428-515 | Sentence | denotes | The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV. |
T101 | 516-681 | Sentence | denotes | RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14]. |
T102 | 682-859 | Sentence | denotes | In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3]. |
T103 | 860-1013 | Sentence | denotes | Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32413736-16195424-48112970 | 423-425 | 16195424 | denotes | 12 |
T82223 | 423-425 | 16195424 | denotes | 12 |