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PMC:7205724 / 11503-12516 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
361 103-112 Species denotes 2019-nCoV Tax:2697049
380 211-214 Gene denotes Rp3 Gene:22924
381 405-408 Gene denotes Rp3 Gene:22924
382 417-420 Gene denotes Rp3 Gene:22924
383 776-777 Gene denotes S Gene:43740568
384 701-702 Gene denotes S Gene:43740568
385 243-256 Species denotes coronaviruses Tax:11118
386 315-323 Species denotes SARS-CoV Tax:694009
387 375-396 Species denotes SARS-like coronavirus Tax:694009
388 413-416 Species denotes CoV Tax:11118
389 473-480 Species denotes patient Tax:9606
390 505-514 Species denotes 2019-nCoV Tax:2697049
391 587-604 Species denotes novel coronavirus Tax:2697049
392 612-633 Species denotes SARS-like coronavirus Tax:694009
393 718-727 Species denotes 2019-nCoV Tax:2697049
394 803-807 Species denotes CoVs Tax:11118
395 817-826 Species denotes SARSr-CoV Tax:694009
396 910-919 Species denotes 2019-nCoV Tax:2697049
397 966-974 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T84 27-33 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T85 170-176 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T86 516-519 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 568-579 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T88 703-710 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 778-785 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 315-323 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 375-379 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 486-490 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 612-616 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 793-797 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 966-974 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T125 113-118 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T126 124-127 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T127 158-162 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T128 191-192 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 199-202 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T130 471-472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 665-669 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T132 728-731 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 732-733 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 789-792 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T135 1008-1012 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T122 410-412 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T123 568-579 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T124 703-710 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T125 778-785 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T8 432-454 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes bronchoalveolar lavage http://purl.bioontology.org/ontology/MEDDRA/10049413

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T50 113-118 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T83 516-519 Chemical denotes RNA http://purl.obolibrary.org/obo/CHEBI_33697
T84 568-579 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T85 703-710 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T86 778-785 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T86 103-112 Species denotes 2019-nCoV NCBItxid:2697049
T87 158-162 Species denotes bats NCBItxid:9397
T88 199-202 Species denotes bat NCBItxid:9397
T89 315-323 Species denotes SARS-CoV NCBItxid:694009
T90 375-396 Species denotes SARS-like coronavirus NCBItxid:694009
T91 486-490 Species denotes SARS NCBItxid:694009
T92 505-514 Species denotes 2019-nCoV NCBItxid:2697049
T93 612-633 Species denotes SARS-like coronavirus NCBItxid:694009
T94 665-669 Species denotes bats NCBItxid:9397
T95 718-727 Species denotes 2019-nCoV NCBItxid:2697049
T96 789-807 Species denotes bat SARS-like CoVs NCBItxid:1508227
T97 817-826 Species denotes SARSr-CoV NCBItxid:694009
T98 910-919 Species denotes 2019-nCoV NCBItxid:2697049
T99 966-974 Species denotes SARS-CoV NCBItxid:694009
T100 1008-1012 Species denotes bats NCBItxid:9397

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T97 0-169 Sentence denotes 4.1.2.1 Hypothesis: whole-genome sequencing and phylogenetic analysis shed light on the origin of the 2019-nCoV virus – It has been probably introduced from bats to men
T98 170-346 Sentence denotes Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003.
T99 347-427 Sentence denotes Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12].
T100 428-515 Sentence denotes The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV.
T101 516-681 Sentence denotes RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14].
T102 682-859 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].
T103 860-1013 Sentence denotes Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
361 103-112 Species denotes 2019-nCoV Tax:2697049
380 211-214 Gene denotes Rp3 Gene:22924
385 243-256 Species denotes coronaviruses Tax:11118
386 315-323 Species denotes SARS-CoV Tax:694009
387 375-396 Species denotes SARS-like coronavirus Tax:694009
381 405-408 Gene denotes Rp3 Gene:22924
388 413-416 Species denotes CoV Tax:11118
382 417-420 Gene denotes Rp3 Gene:22924
389 473-480 Species denotes patient Tax:9606
390 505-514 Species denotes 2019-nCoV Tax:2697049
391 587-604 Species denotes novel coronavirus Tax:2697049
392 612-633 Species denotes SARS-like coronavirus Tax:694009
384 701-702 Gene denotes S Gene:43740568
393 718-727 Species denotes 2019-nCoV Tax:2697049
383 776-777 Gene denotes S Gene:43740568
394 803-807 Species denotes CoVs Tax:11118
395 817-826 Species denotes SARSr-CoV Tax:694009
396 910-919 Species denotes 2019-nCoV Tax:2697049
397 966-974 Species denotes SARS-CoV Tax:694009

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1233 701-710 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1266 776-785 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T58124 0-7 CD denotes 4.1.2.1
T5376 9-19 NN denotes Hypothesis
T34741 19-20 -COLON- denotes :
T62090 21-33 JJ denotes whole-genome
T52998 34-44 NN denotes sequencing
T20323 45-48 CC denotes and
T7728 49-61 JJ denotes phylogenetic
T67504 62-70 NN denotes analysis
T76343 71-75 VBD denotes shed
T36219 76-81 NN denotes light
T40337 82-84 IN denotes on
T54452 85-88 DT denotes the
T33856 89-95 NN denotes origin
T37831 96-98 IN denotes of
T28355 99-102 DT denotes the
T31802 103-112 JJ denotes 2019-nCoV
T95515 113-118 NN denotes virus
T64814 119-120 VBP denotes –
T87875 121-123 PRP denotes It
T46333 124-127 VBZ denotes has
T28188 128-132 VBN denotes been
T22492 133-141 RB denotes probably
T62169 142-152 VBN denotes introduced
T13328 153-157 IN denotes from
T96521 158-162 NNS denotes bats
T30811 163-165 TO denotes to
T52514 166-169 NNS denotes men
T28843 170-176 NN denotes Genome
T46450 177-187 NN denotes sequencing
T27748 188-190 IN denotes of
T27295 191-192 DT denotes a
T62671 193-198 JJ denotes fecal
T93555 199-202 NN denotes bat
T52375 203-209 NN denotes sample
T30106 209-210 -COMMA- denotes ,
T79240 211-214 NN denotes Rp3
T51658 214-215 -COMMA- denotes ,
T48337 216-221 MD denotes could
T23533 222-228 VB denotes detect
T45372 229-231 DT denotes an
T48569 232-239 NN denotes isolate
T20680 240-242 IN denotes of
T19302 243-256 NNS denotes coronaviruses
T18234 256-257 -COMMA- denotes ,
T77212 258-263 WDT denotes which
T37427 264-267 VBD denotes was
T90838 268-274 RB denotes almost
T69281 275-284 JJ denotes identical
T30703 285-287 TO denotes to
T45933 288-291 DT denotes the
T53102 292-301 JJ denotes causative
T21161 302-307 NN denotes agent
T31651 308-310 IN denotes of
T24092 311-314 DT denotes the
T76932 315-323 JJ denotes SARS-CoV
T42133 324-332 NN denotes outbreak
T26029 333-335 IN denotes of
T7676 336-345 CD denotes 2002–2003
T55417 347-352 RB denotes Hence
T40490 352-353 -COMMA- denotes ,
T99577 354-356 PRP denotes it
T85900 357-365 VBD denotes attained
T84303 366-369 DT denotes the
T99794 370-374 NN denotes name
T28667 375-384 JJ denotes SARS-like
T13194 385-396 NN denotes coronavirus
T40481 397-404 NN denotes isolate
T51053 405-408 NN denotes Rp3
T84085 409-410 -LRB- denotes (
T37600 410-416 NN denotes SL-CoV
T96263 417-420 NN denotes Rp3
T15140 420-421 -RRB- denotes )
T87895 422-423 -LRB- denotes [
T40198 423-425 CD denotes 12
T79787 425-426 -RRB- denotes ]
T87849 428-431 DT denotes The
T82417 432-447 JJ denotes bronchoalveolar
T31054 448-454 NN denotes lavage
T37752 455-460 NN denotes fluid
T74238 461-462 -LRB- denotes (
T3228 462-466 NN denotes BALF
T70930 466-467 -RRB- denotes )
T9092 468-470 IN denotes of
T49696 471-472 DT denotes a
T42278 473-480 NN denotes patient
T77065 481-485 IN denotes with
T56445 486-490 NNS denotes SARS
T91231 491-500 VBD denotes contained
T55260 501-504 DT denotes the
T14876 505-514 NN denotes 2019-nCoV
T41253 516-519 NN denotes RNA
T76927 520-530 NN denotes sequencing
T21523 531-536 MD denotes could
T61033 537-543 VB denotes reveal
T57735 544-549 RB denotes about
T17027 550-552 CD denotes 90
T88762 552-553 NN denotes %
T56862 554-564 NN denotes similarity
T58084 565-567 IN denotes in
T42893 568-579 NNS denotes nucleotides
T28737 580-582 IN denotes of
T98581 583-586 DT denotes the
T54378 587-592 JJ denotes novel
T41408 593-604 NN denotes coronavirus
T8820 605-608 CC denotes and
T82233 609-611 IN denotes of
T87395 612-621 JJ denotes SARS-like
T25315 622-633 NN denotes coronavirus
T40001 634-638 WDT denotes that
T50563 639-642 VBD denotes had
T73327 643-653 RB denotes previously
T43308 654-661 VBN denotes related
T87528 662-664 TO denotes to
T18784 665-669 NNS denotes bats
T21998 670-671 -LRB- denotes [
T45109 671-673 CD denotes 13
T62980 673-674 -RRB- denotes ]
T34259 674-675 -COMMA- denotes ,
T56176 676-677 -LRB- denotes [
T43975 677-679 CD denotes 14
T89437 679-680 -RRB- denotes ]
T32040 682-684 IN denotes In
T92103 685-695 JJ denotes particular
T46259 695-696 -COMMA- denotes ,
T37699 697-700 DT denotes the
T72545 701-702 NN denotes S
T24131 703-710 NN denotes protein
T44437 711-713 IN denotes of
T20264 714-717 DT denotes the
T45006 718-727 NN denotes 2019-nCoV
T85613 728-731 VBZ denotes has
T77820 732-733 DT denotes a
T51362 734-738 JJ denotes high
T86629 739-747 NN denotes sequence
T85333 748-756 NN denotes identity
T4126 757-759 IN denotes of
T23106 760-765 CD denotes 80–98
T47986 765-766 NN denotes %
T62529 767-771 IN denotes with
T47180 772-775 DT denotes the
T64906 776-777 NN denotes S
T55893 778-785 NN denotes protein
T84276 786-788 IN denotes of
T27337 789-792 NN denotes bat
T65227 793-802 JJ denotes SARS-like
T48841 803-807 NNS denotes CoVs
T43941 807-808 -COMMA- denotes ,
T76487 809-813 JJ denotes such
T69082 814-816 IN denotes as
T24341 817-826 JJ denotes SARSr-CoV
T77949 827-832 NN denotes ZXC21
T33016 833-834 NNP denotes S
T45981 834-835 -COMMA- denotes ,
T58714 836-840 NNP denotes ZC45
T47242 841-842 NNP denotes S
T24128 842-843 -COMMA- denotes ,
T33217 844-847 CC denotes and
T49688 848-854 NN denotes RaTG13
T48117 855-856 -LRB- denotes [
T8349 856-857 CD denotes 3
T82587 857-858 -RRB- denotes ]
T26826 860-868 RB denotes Moreover
T40424 868-869 -COMMA- denotes ,
T82603 870-872 IN denotes in
T83961 873-885 JJ denotes phylogenomic
T26439 886-891 NNS denotes trees
T36143 891-892 -COMMA- denotes ,
T1931 893-901 NNS denotes branches
T94548 902-905 IN denotes for
T9564 906-909 DT denotes the
T82190 910-919 NN denotes 2019-nCoV
T51998 920-923 VBP denotes are
T48884 924-926 IN denotes of
T84416 927-934 JJR denotes greater
T46091 935-941 NN denotes length
T44026 942-946 IN denotes than
T19745 947-952 DT denotes those
T66697 953-956 IN denotes for
T66659 957-960 DT denotes the
T22981 961-965 CD denotes 2003
T47496 966-974 NN denotes SARS-CoV
T18117 974-975 -COMMA- denotes ,
T90160 976-979 CC denotes and
T86256 980-989 RB denotes therefore
T89702 990-994 RBR denotes more
T19375 995-1004 JJ denotes favorable
T58982 1005-1007 TO denotes to
T17546 1008-1012 NNS denotes bats
R9155 T33856 T37831 arg1Of origin,of
R34142 T95515 T37831 arg2Of virus,of
R11743 T95515 T28355 arg1Of virus,the
R25437 T95515 T31802 arg1Of virus,2019-nCoV
R28087 T5376 T64814 arg1Of Hypothesis,–
R18514 T62169 T64814 arg2Of introduced,–
R46916 T87875 T46333 arg1Of It,has
R93896 T37752 T9092 arg1Of fluid,of
R25292 T42278 T9092 arg2Of patient,of
R26327 T42278 T49696 arg1Of patient,a
R92357 T42278 T77065 arg1Of patient,with
R79425 T56445 T77065 arg2Of SARS,with
R79797 T37752 T91231 arg1Of fluid,contained
R33601 T14876 T91231 arg2Of 2019-nCoV,contained
R47706 T14876 T55260 arg1Of 2019-nCoV,the
R82198 T76927 T41253 arg1Of sequencing,RNA
R9633 T55893 T62529 arg2Of protein,with
R8236 T55893 T47180 arg1Of protein,the
R37164 T55893 T64906 arg1Of protein,S
R27603 T55893 T84276 arg1Of protein,of
R84379 T48841 T84276 arg2Of CoVs,of
R59931 T48841 T27337 arg1Of CoVs,bat
R85967 T48841 T65227 arg1Of CoVs,SARS-like
R99461 T48841 T43941 arg1Of CoVs,","
R20816 T69082 T76487 arg1Of as,such
R77868 T48841 T69082 arg1Of CoVs,as
R78999 T5376 T58124 arg1Of Hypothesis,4.1.2.1
R51882 T5376 T34741 arg1Of Hypothesis,:
R48542 T76343 T34741 arg2Of shed,:
R32918 T52998 T62090 arg1Of sequencing,whole-genome
R56076 T52998 T20323 arg1Of sequencing,and
R68735 T67504 T20323 arg2Of analysis,and
R11336 T67504 T7728 arg1Of analysis,phylogenetic
R90147 T20323 T76343 arg1Of and,shed
R93727 T36219 T76343 arg2Of light,shed
R47808 T76343 T40337 arg1Of shed,on
R66754 T33856 T40337 arg2Of origin,on
R25360 T33856 T54452 arg1Of origin,the
R78116 T62169 T46333 arg2Of introduced,has
R79879 T87875 T28188 arg1Of It,been
R23970 T62169 T28188 arg2Of introduced,been
R11663 T62169 T22492 arg1Of introduced,probably
R22009 T87875 T62169 arg2Of It,introduced
R21833 T62169 T13328 arg1Of introduced,from
R9730 T96521 T13328 arg2Of bats,from
R43289 T96521 T30811 arg1Of bats,to
R53501 T52514 T30811 arg2Of men,to
R14066 T46450 T28843 arg1Of sequencing,Genome
R80891 T46450 T27748 arg1Of sequencing,of
R29083 T52375 T27748 arg2Of sample,of
R55505 T52375 T27295 arg1Of sample,a
R70294 T52375 T62671 arg1Of sample,fecal
R95907 T52375 T93555 arg1Of sample,bat
R77496 T52375 T30106 arg1Of sample,","
R70744 T79240 T30106 arg2Of Rp3,","
R84750 T23533 T51658 arg1Of detect,","
R22256 T46450 T48337 arg1Of sequencing,could
R84362 T23533 T48337 arg2Of detect,could
R13690 T46450 T23533 arg1Of sequencing,detect
R81506 T48569 T23533 arg2Of isolate,detect
R60741 T48569 T45372 arg1Of isolate,an
R29203 T48569 T20680 arg1Of isolate,of
R55007 T19302 T20680 arg2Of coronaviruses,of
R77595 T48569 T18234 arg1Of isolate,","
R74345 T48569 T77212 arg1Of isolate,which
R82277 T48569 T37427 arg1Of isolate,was
R49235 T69281 T37427 arg2Of identical,was
R15724 T69281 T90838 arg1Of identical,almost
R26850 T48569 T69281 arg1Of isolate,identical
R99770 T69281 T30703 arg1Of identical,to
R99853 T21161 T30703 arg2Of agent,to
R34313 T21161 T45933 arg1Of agent,the
R90071 T21161 T53102 arg1Of agent,causative
R83498 T21161 T31651 arg1Of agent,of
R46891 T42133 T31651 arg2Of outbreak,of
R27084 T42133 T24092 arg1Of outbreak,the
R95994 T42133 T76932 arg1Of outbreak,SARS-CoV
R47434 T42133 T26029 arg1Of outbreak,of
R97280 T7676 T26029 arg2Of 2002–2003,of
R11853 T85900 T55417 arg1Of attained,Hence
R54546 T85900 T40490 arg1Of attained,","
R36475 T99577 T85900 arg1Of it,attained
R69085 T51053 T85900 arg2Of Rp3,attained
R2126 T51053 T84303 arg1Of Rp3,the
R94363 T51053 T99794 arg1Of Rp3,name
R84505 T51053 T28667 arg1Of Rp3,SARS-like
R51413 T51053 T13194 arg1Of Rp3,coronavirus
R38349 T51053 T40481 arg1Of Rp3,isolate
R28069 T51053 T84085 arg1Of Rp3,(
R49507 T96263 T84085 arg2Of Rp3,(
R98383 T15140 T84085 arg3Of ),(
R43398 T96263 T37600 arg1Of Rp3,SL-CoV
R58949 T85900 T87895 arg1Of attained,[
R31914 T40198 T87895 arg2Of 12,[
R93865 T79787 T87895 arg3Of ],[
R4610 T37752 T87849 arg1Of fluid,The
R17928 T37752 T82417 arg1Of fluid,bronchoalveolar
R63818 T37752 T31054 arg1Of fluid,lavage
R54661 T37752 T74238 arg1Of fluid,(
R50117 T3228 T74238 arg2Of BALF,(
R11221 T70930 T74238 arg3Of ),(
R27740 T76927 T21523 arg1Of sequencing,could
R2092 T61033 T21523 arg2Of reveal,could
R5221 T76927 T61033 arg1Of sequencing,reveal
R54859 T56862 T61033 arg2Of similarity,reveal
R81820 T17027 T57735 arg1Of 90,about
R26135 T56862 T17027 arg1Of similarity,90
R37944 T17027 T88762 arg1Of 90,%
R19722 T56862 T58084 arg1Of similarity,in
R26450 T42893 T58084 arg2Of nucleotides,in
R85800 T42893 T28737 arg1Of nucleotides,of
R6863 T41408 T28737 arg2Of coronavirus,of
R72528 T41408 T98581 arg1Of coronavirus,the
R98967 T41408 T54378 arg1Of coronavirus,novel
R17590 T58084 T8820 arg1Of in,and
R49869 T82233 T8820 arg2Of of,and
R76106 T56862 T82233 arg1Of similarity,of
R40705 T25315 T82233 arg2Of coronavirus,of
R21771 T25315 T87395 arg1Of coronavirus,SARS-like
R89495 T25315 T40001 arg1Of coronavirus,that
R12805 T25315 T50563 arg1Of coronavirus,had
R43366 T43308 T50563 arg2Of related,had
R19626 T43308 T73327 arg1Of related,previously
R71640 T25315 T43308 arg1Of coronavirus,related
R98847 T43308 T87528 arg1Of related,to
R56090 T18784 T87528 arg2Of bats,to
R53709 T18784 T21998 arg1Of bats,[
R55235 T45109 T21998 arg2Of 13,[
R4872 T62980 T21998 arg3Of ],[
R85928 T43308 T34259 arg1Of related,","
R66763 T43308 T56176 arg1Of related,[
R82331 T43975 T56176 arg2Of 14,[
R65672 T89437 T56176 arg3Of ],[
R60898 T85613 T32040 arg1Of has,In
R8931 T92103 T32040 arg2Of particular,In
R37482 T85613 T46259 arg1Of has,","
R69236 T24131 T37699 arg1Of protein,the
R90434 T24131 T72545 arg1Of protein,S
R42614 T24131 T44437 arg1Of protein,of
R23596 T45006 T44437 arg2Of 2019-nCoV,of
R11370 T45006 T20264 arg1Of 2019-nCoV,the
R80817 T24131 T85613 arg1Of protein,has
R49961 T85333 T85613 arg2Of identity,has
R54652 T85333 T77820 arg1Of identity,a
R29265 T85333 T51362 arg1Of identity,high
R4874 T85333 T86629 arg1Of identity,sequence
R2751 T85333 T4126 arg1Of identity,of
R99494 T47986 T4126 arg2Of %,of
R81734 T47986 T23106 arg1Of %,80–98
R65938 T85613 T62529 arg1Of has,with
R59047 T33217 T69082 arg2Of and,as
R62932 T33016 T24341 arg1Of S,SARSr-CoV
R11481 T33016 T77949 arg1Of S,ZXC21
R38926 T33016 T45981 arg1Of S,","
R47300 T47242 T45981 arg2Of S,","
R77326 T47242 T58714 arg1Of S,ZC45
R75080 T33217 T24128 arg1Of and,","
R91783 T45981 T33217 arg1Of ",",and
R80254 T49688 T33217 arg2Of RaTG13,and
R54614 T49688 T48117 arg1Of RaTG13,[
R65396 T8349 T48117 arg2Of 3,[
R80187 T82587 T48117 arg3Of ],[
R79793 T51998 T26826 arg1Of are,Moreover
R43834 T51998 T40424 arg1Of are,","
R27649 T51998 T82603 arg1Of are,in
R96220 T26439 T82603 arg2Of trees,in
R84762 T26439 T83961 arg1Of trees,phylogenomic
R83564 T51998 T36143 arg1Of are,","
R35953 T1931 T94548 arg1Of branches,for
R50313 T82190 T94548 arg2Of 2019-nCoV,for
R39618 T82190 T9564 arg1Of 2019-nCoV,the
R26497 T1931 T51998 arg1Of branches,are
R13764 T19375 T51998 arg2Of favorable,are
R81075 T51998 T48884 arg1Of are,of
R51585 T46091 T48884 arg2Of length,of
R73778 T46091 T84416 arg1Of length,greater
R53908 T51998 T44026 arg1Of are,than
R52362 T19745 T44026 arg2Of those,than
R18993 T19745 T66697 arg1Of those,for
R89736 T47496 T66697 arg2Of SARS-CoV,for
R79769 T47496 T66659 arg1Of SARS-CoV,the
R19666 T47496 T22981 arg1Of SARS-CoV,2003
R93374 T51998 T18117 arg1Of are,","
R50127 T86256 T90160 arg1Of therefore,and
R3485 T19375 T86256 arg1Of favorable,therefore
R2351 T19375 T89702 arg1Of favorable,more
R91193 T1931 T19375 arg1Of branches,favorable
R80199 T19375 T58982 arg1Of favorable,to
R45246 T17546 T58982 arg2Of bats,to

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T84 27-33 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T85 170-176 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T86 516-519 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 568-579 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T88 703-710 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 778-785 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T68 315-323 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 375-379 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 486-490 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 612-616 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 793-797 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 966-974 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T97 0-169 Sentence denotes 4.1.2.1 Hypothesis: whole-genome sequencing and phylogenetic analysis shed light on the origin of the 2019-nCoV virus – It has been probably introduced from bats to men
T98 170-346 Sentence denotes Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003.
T99 347-427 Sentence denotes Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12].
T100 428-515 Sentence denotes The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV.
T101 516-681 Sentence denotes RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14].
T102 682-859 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].
T103 860-1013 Sentence denotes Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats.

2_test

Id Subject Object Predicate Lexical cue
32413736-16195424-48112970 423-425 16195424 denotes 12
T82223 423-425 16195424 denotes 12