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PMC:7205724 / 11460-14221 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
361 146-155 Species denotes 2019-nCoV Tax:2697049
380 254-257 Gene denotes Rp3 Gene:22924
381 448-451 Gene denotes Rp3 Gene:22924
382 460-463 Gene denotes Rp3 Gene:22924
383 819-820 Gene denotes S Gene:43740568
384 744-745 Gene denotes S Gene:43740568
385 286-299 Species denotes coronaviruses Tax:11118
386 358-366 Species denotes SARS-CoV Tax:694009
387 418-439 Species denotes SARS-like coronavirus Tax:694009
388 456-459 Species denotes CoV Tax:11118
389 516-523 Species denotes patient Tax:9606
390 548-557 Species denotes 2019-nCoV Tax:2697049
391 630-647 Species denotes novel coronavirus Tax:2697049
392 655-676 Species denotes SARS-like coronavirus Tax:694009
393 761-770 Species denotes 2019-nCoV Tax:2697049
394 846-850 Species denotes CoVs Tax:11118
395 860-869 Species denotes SARSr-CoV Tax:694009
396 953-962 Species denotes 2019-nCoV Tax:2697049
397 1009-1017 Species denotes SARS-CoV Tax:694009
419 1591-1594 Gene denotes Rp3 Gene:22924
420 1817-1822 Gene denotes spike Gene:43740568
421 2022-2027 Gene denotes spike Gene:43740568
422 2533-2536 Gene denotes Rp3 Gene:22924
423 2151-2154 Gene denotes Rp3 Gene:22924
424 1190-1204 Species denotes horseshoe bats Tax:49442
425 1333-1341 Species denotes SARS-CoV Tax:694009
426 1448-1456 Species denotes SARS-CoV Tax:694009
427 1587-1590 Species denotes CoV Tax:11118
428 1623-1631 Species denotes SARS-CoV Tax:694009
429 1713-1721 Species denotes SARS-CoV Tax:694009
430 1805-1816 Species denotes coronavirus Tax:11118
431 1887-1900 Species denotes coronaviruses Tax:11118
432 2116-2121 Species denotes human Tax:9606
433 2122-2130 Species denotes SARS-CoV Tax:694009
434 2147-2150 Species denotes CoV Tax:11118
435 2429-2434 Species denotes human Tax:9606
436 2435-2443 Species denotes SARS-CoV Tax:694009
437 2529-2532 Species denotes CoV Tax:11118
438 2752-2760 Species denotes SARS-CoV Tax:694009
439 1248-1256 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T83 7-12 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T84 70-76 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T85 213-219 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T86 559-562 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 611-622 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T88 746-753 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 821-828 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T90 1082-1087 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T91 1257-1265 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T92 1378-1386 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T93 1535-1545 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T94 1568-1575 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T95 1693-1699 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 1763-1767 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T97 1823-1830 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T98 2064-2077 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T99 2103-2110 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 2201-2209 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T101 2230-2237 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 2394-2408 Body_part denotes cell membranes http://purl.org/sig/ont/fma/fma63841
T103 2394-2398 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 7-12 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T6 1082-1087 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T70 28-32 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 358-366 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 418-422 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 529-533 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 655-659 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 836-840 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 1009-1017 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 1126-1134 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 1248-1256 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T79 1333-1341 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 1448-1456 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 1623-1631 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 1713-1721 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 2122-2130 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 2435-2443 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 2752-2760 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T124 18-22 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T125 156-161 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T126 167-170 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T127 201-205 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T128 234-235 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 242-245 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T130 514-515 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 708-712 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T132 771-774 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 775-776 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 832-835 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T135 1051-1055 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T136 1148-1152 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T137 1200-1204 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T138 1421-1424 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T139 1472-1473 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 1763-1767 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T141 1788-1790 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T142 2051-2059 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T143 2116-2121 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T144 2140-2143 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T145 2277-2279 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T146 2335-2337 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T147 2335-2337 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T148 2394-2398 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T149 2399-2408 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T150 2429-2434 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T151 2462-2463 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T152 2503-2505 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T153 2522-2525 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T154 2659-2662 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T122 453-455 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T123 611-622 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T124 746-753 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T125 821-828 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T126 1378-1386 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T127 1535-1545 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T128 1584-1586 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T129 1823-1830 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T130 2064-2077 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T131 2103-2110 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T132 2144-2146 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T133 2201-2209 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T134 2230-2237 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T135 2335-2337 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T136 2526-2528 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T8 475-497 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes bronchoalveolar lavage http://purl.bioontology.org/ontology/MEDDRA/10049413
T9 1272-1297 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes Polymerase chain reaction http://purl.bioontology.org/ontology/MEDDRA/10050967
T10 1299-1302 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes PCR http://purl.bioontology.org/ontology/MEDDRA/10050967
T11 2230-2239 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes protein S http://purl.bioontology.org/ontology/MEDDRA/10050417

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T50 156-161 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T51 1973-1983 http://purl.obolibrary.org/obo/IDO_0000607 denotes production
T52 2389-2393 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T53 2394-2398 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T54 2585-2595 http://purl.obolibrary.org/obo/BFO_0000034 denotes functional

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T83 559-562 Chemical denotes RNA http://purl.obolibrary.org/obo/CHEBI_33697
T84 611-622 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T85 746-753 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T86 821-828 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T87 1378-1386 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T88 1535-1545 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T89 1823-1830 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T90 2064-2077 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T91 2103-2110 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T92 2201-2209 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T93 2230-2237 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T85 18-41 Species denotes bats with SARS-like CoV NCBItxid:1508227
T86 146-155 Species denotes 2019-nCoV NCBItxid:2697049
T87 201-205 Species denotes bats NCBItxid:9397
T88 242-245 Species denotes bat NCBItxid:9397
T89 358-366 Species denotes SARS-CoV NCBItxid:694009
T90 418-439 Species denotes SARS-like coronavirus NCBItxid:694009
T91 529-533 Species denotes SARS NCBItxid:694009
T92 548-557 Species denotes 2019-nCoV NCBItxid:2697049
T93 655-676 Species denotes SARS-like coronavirus NCBItxid:694009
T94 708-712 Species denotes bats NCBItxid:9397
T95 761-770 Species denotes 2019-nCoV NCBItxid:2697049
T96 832-850 Species denotes bat SARS-like CoVs NCBItxid:1508227
T97 860-869 Species denotes SARSr-CoV NCBItxid:694009
T98 953-962 Species denotes 2019-nCoV NCBItxid:2697049
T99 1009-1017 Species denotes SARS-CoV NCBItxid:694009
T100 1051-1055 Species denotes bats NCBItxid:9397
T101 1126-1134 Species denotes SARS-CoV NCBItxid:694009
T102 1148-1152 Species denotes bats NCBItxid:9397
T103 1177-1188 Species denotes Rhinolophus NCBItxid:49442
T104 1190-1204 Species denotes horseshoe bats NCBItxid:49442
T105 1221-1234 Species denotes Rhinolophidae NCBItxid:58055
T106 1248-1256 Species denotes SARS-CoV NCBItxid:694009
T107 1333-1341 Species denotes SARS-CoV NCBItxid:694009
T108 1421-1424 Species denotes bat NCBItxid:9397
T109 1448-1456 Species denotes SARS-CoV NCBItxid:694009
T110 1623-1631 Species denotes SARS-CoV NCBItxid:694009
T111 1713-1721 Species denotes SARS-CoV NCBItxid:694009
T112 2116-2130 Species denotes human SARS-CoV NCBItxid:694009
T113 2140-2143 Species denotes bat NCBItxid:9397
T114 2429-2443 Species denotes human SARS-CoV NCBItxid:694009
T115 2522-2525 Species denotes bat NCBItxid:9397
T116 2659-2662 Species denotes bat NCBItxid:9397
T117 2752-2760 Species denotes SARS-CoV NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T96 0-41 Sentence denotes 4.1.2 Serum from bats with SARS-like CoV
T97 43-212 Sentence denotes 4.1.2.1 Hypothesis: whole-genome sequencing and phylogenetic analysis shed light on the origin of the 2019-nCoV virus – It has been probably introduced from bats to men
T98 213-389 Sentence denotes Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003.
T99 390-470 Sentence denotes Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12].
T100 471-558 Sentence denotes The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV.
T101 559-724 Sentence denotes RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14].
T102 725-902 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].
T103 903-1056 Sentence denotes Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats.
T104 1058-1077 Sentence denotes 4.1.2.2 Rationale:
T105 1078-1134 Sentence denotes Bat serum is not able to efficiently neutralize SARS-CoV
T106 1135-1271 Sentence denotes The range of bats, belonging to the genus Rhinolophus (horseshoe bats) and the family Rhinolophidae, produce the SARS-CoV antibody [12].
T107 1272-1462 Sentence denotes Polymerase chain reaction (PCR) will confirm the presence of SARS-CoV nucleocapsid (N) and polymerase (P) proteins in fecal samples if an individual bat being seropositive for SARS-CoV [12].
T108 1463-1669 Sentence denotes There is a significant degree of resemblance of greater than 90% in the nucleotide sequence of the viral genomes between SL-CoV Rp3 [12] and the Tor2 strain of SARS-CoV – which was isolated in Toronto [15].
T109 1670-1882 Sentence denotes The differences in the genome sequences of SARS-CoV in the two species occur merely in the S gene – which encodes the S1 domain of the coronavirus spike protein and contains regions with high mutation rates [12].
T110 1883-2111 Sentence denotes The coronaviruses commonly possess five open reading frames (ORF) that correlate with the production of the replicase polyprotein (P), the spike (S), envelope (E), and membrane (M) glycoproteins and the nucleocapsid (N) protein.
T111 2112-2269 Sentence denotes The human SARS-CoV Tor2 and bat SL-CoV Rp3 strains remain more than 90% identical at the proteins P, E, M, and N. the protein S consists of two main domains:
T112 2270-2409 Sentence denotes 1) the S1 domain conveys the role of receptor binding and 2) the S2 domain assumes the role of the fusion of viral and host-cell membranes.
T113 2410-2544 Sentence denotes In particular, the human SARS-CoV Tor2 strain shows a noticeable degree of difference in the S1 domain from the bat SL-CoV Rp3 strain.
T114 2545-2761 Sentence denotes This diversity would suffice to produce functional differences between the species, and is an apparent reason why bat sera having high levels of cross-reactive antibodies not acted efficiently to neutralize SARS-CoV.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 7-12 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T6 1082-1087 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
361 146-155 Species denotes 2019-nCoV Tax:2697049
380 254-257 Gene denotes Rp3 Gene:22924
385 286-299 Species denotes coronaviruses Tax:11118
386 358-366 Species denotes SARS-CoV Tax:694009
387 418-439 Species denotes SARS-like coronavirus Tax:694009
381 448-451 Gene denotes Rp3 Gene:22924
388 456-459 Species denotes CoV Tax:11118
382 460-463 Gene denotes Rp3 Gene:22924
389 516-523 Species denotes patient Tax:9606
390 548-557 Species denotes 2019-nCoV Tax:2697049
391 630-647 Species denotes novel coronavirus Tax:2697049
392 655-676 Species denotes SARS-like coronavirus Tax:694009
384 744-745 Gene denotes S Gene:43740568
393 761-770 Species denotes 2019-nCoV Tax:2697049
383 819-820 Gene denotes S Gene:43740568
394 846-850 Species denotes CoVs Tax:11118
395 860-869 Species denotes SARSr-CoV Tax:694009
396 953-962 Species denotes 2019-nCoV Tax:2697049
397 1009-1017 Species denotes SARS-CoV Tax:694009
424 1190-1204 Species denotes horseshoe bats Tax:49442
439 1248-1256 Species denotes SARS-CoV Tax:694009
425 1333-1341 Species denotes SARS-CoV Tax:694009
426 1448-1456 Species denotes SARS-CoV Tax:694009
427 1587-1590 Species denotes CoV Tax:11118
419 1591-1594 Gene denotes Rp3 Gene:22924
428 1623-1631 Species denotes SARS-CoV Tax:694009
429 1713-1721 Species denotes SARS-CoV Tax:694009
430 1805-1816 Species denotes coronavirus Tax:11118
420 1817-1822 Gene denotes spike Gene:43740568
431 1887-1900 Species denotes coronaviruses Tax:11118
421 2022-2027 Gene denotes spike Gene:43740568
432 2116-2121 Species denotes human Tax:9606
433 2122-2130 Species denotes SARS-CoV Tax:694009
434 2147-2150 Species denotes CoV Tax:11118
423 2151-2154 Gene denotes Rp3 Gene:22924
435 2429-2434 Species denotes human Tax:9606
436 2435-2443 Species denotes SARS-CoV Tax:694009
437 2529-2532 Species denotes CoV Tax:11118
422 2533-2536 Gene denotes Rp3 Gene:22924
438 2752-2760 Species denotes SARS-CoV Tax:694009

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1233 744-753 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1266 819-828 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1299 1817-1830 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340
T1300 1991-2012 Protein denotes replicase polyprotein https://www.uniprot.org/uniprot/Q9IJX4|https://www.uniprot.org/uniprot/Q9DSN9|https://www.uniprot.org/uniprot/O36966
T1303 2064-2077 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T1388 2099-2110 Protein denotes (N) protein https://www.uniprot.org/uniprot/Q01552|https://www.uniprot.org/uniprot/P0C797|https://www.uniprot.org/uniprot/P0C796
T1391 2230-2239 Protein denotes protein S https://www.uniprot.org/uniprot/Q3T4M2|https://www.uniprot.org/uniprot/Q01209|https://www.uniprot.org/uniprot/Q00844|https://www.uniprot.org/uniprot/P35958|https://www.uniprot.org/uniprot/P27392|https://www.uniprot.org/uniprot/P23429|https://www.uniprot.org/uniprot/P23428|https://www.uniprot.org/uniprot/P22175|https://www.uniprot.org/uniprot/P21125|https://www.uniprot.org/uniprot/P21124|https://www.uniprot.org/uniprot/P16904|https://www.uniprot.org/uniprot/P03408

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T16328 0-5 CD denotes 4.1.2
T3323 7-12 NN denotes Serum
T79102 13-17 IN denotes from
T73342 18-22 NNS denotes bats
T89375 23-27 IN denotes with
T36397 28-37 JJ denotes SARS-like
T22412 38-41 NN denotes CoV
T58124 43-50 CD denotes 4.1.2.1
T5376 52-62 NN denotes Hypothesis
T34741 62-63 -COLON- denotes :
T62090 64-76 JJ denotes whole-genome
T52998 77-87 NN denotes sequencing
T20323 88-91 CC denotes and
T7728 92-104 JJ denotes phylogenetic
T67504 105-113 NN denotes analysis
T76343 114-118 VBD denotes shed
T36219 119-124 NN denotes light
T40337 125-127 IN denotes on
T54452 128-131 DT denotes the
T33856 132-138 NN denotes origin
T37831 139-141 IN denotes of
T28355 142-145 DT denotes the
T31802 146-155 JJ denotes 2019-nCoV
T95515 156-161 NN denotes virus
T64814 162-163 VBP denotes –
T87875 164-166 PRP denotes It
T46333 167-170 VBZ denotes has
T28188 171-175 VBN denotes been
T22492 176-184 RB denotes probably
T62169 185-195 VBN denotes introduced
T13328 196-200 IN denotes from
T96521 201-205 NNS denotes bats
T30811 206-208 TO denotes to
T52514 209-212 NNS denotes men
T28843 213-219 NN denotes Genome
T46450 220-230 NN denotes sequencing
T27748 231-233 IN denotes of
T27295 234-235 DT denotes a
T62671 236-241 JJ denotes fecal
T93555 242-245 NN denotes bat
T52375 246-252 NN denotes sample
T30106 252-253 -COMMA- denotes ,
T79240 254-257 NN denotes Rp3
T51658 257-258 -COMMA- denotes ,
T48337 259-264 MD denotes could
T23533 265-271 VB denotes detect
T45372 272-274 DT denotes an
T48569 275-282 NN denotes isolate
T20680 283-285 IN denotes of
T19302 286-299 NNS denotes coronaviruses
T18234 299-300 -COMMA- denotes ,
T77212 301-306 WDT denotes which
T37427 307-310 VBD denotes was
T90838 311-317 RB denotes almost
T69281 318-327 JJ denotes identical
T30703 328-330 TO denotes to
T45933 331-334 DT denotes the
T53102 335-344 JJ denotes causative
T21161 345-350 NN denotes agent
T31651 351-353 IN denotes of
T24092 354-357 DT denotes the
T76932 358-366 JJ denotes SARS-CoV
T42133 367-375 NN denotes outbreak
T26029 376-378 IN denotes of
T7676 379-388 CD denotes 2002–2003
T55417 390-395 RB denotes Hence
T40490 395-396 -COMMA- denotes ,
T99577 397-399 PRP denotes it
T85900 400-408 VBD denotes attained
T84303 409-412 DT denotes the
T99794 413-417 NN denotes name
T28667 418-427 JJ denotes SARS-like
T13194 428-439 NN denotes coronavirus
T40481 440-447 NN denotes isolate
T51053 448-451 NN denotes Rp3
T84085 452-453 -LRB- denotes (
T37600 453-459 NN denotes SL-CoV
T96263 460-463 NN denotes Rp3
T15140 463-464 -RRB- denotes )
T87895 465-466 -LRB- denotes [
T40198 466-468 CD denotes 12
T79787 468-469 -RRB- denotes ]
T87849 471-474 DT denotes The
T82417 475-490 JJ denotes bronchoalveolar
T31054 491-497 NN denotes lavage
T37752 498-503 NN denotes fluid
T74238 504-505 -LRB- denotes (
T3228 505-509 NN denotes BALF
T70930 509-510 -RRB- denotes )
T9092 511-513 IN denotes of
T49696 514-515 DT denotes a
T42278 516-523 NN denotes patient
T77065 524-528 IN denotes with
T56445 529-533 NNS denotes SARS
T91231 534-543 VBD denotes contained
T55260 544-547 DT denotes the
T14876 548-557 NN denotes 2019-nCoV
T41253 559-562 NN denotes RNA
T76927 563-573 NN denotes sequencing
T21523 574-579 MD denotes could
T61033 580-586 VB denotes reveal
T57735 587-592 RB denotes about
T17027 593-595 CD denotes 90
T88762 595-596 NN denotes %
T56862 597-607 NN denotes similarity
T58084 608-610 IN denotes in
T42893 611-622 NNS denotes nucleotides
T28737 623-625 IN denotes of
T98581 626-629 DT denotes the
T54378 630-635 JJ denotes novel
T41408 636-647 NN denotes coronavirus
T8820 648-651 CC denotes and
T82233 652-654 IN denotes of
T87395 655-664 JJ denotes SARS-like
T25315 665-676 NN denotes coronavirus
T40001 677-681 WDT denotes that
T50563 682-685 VBD denotes had
T73327 686-696 RB denotes previously
T43308 697-704 VBN denotes related
T87528 705-707 TO denotes to
T18784 708-712 NNS denotes bats
T21998 713-714 -LRB- denotes [
T45109 714-716 CD denotes 13
T62980 716-717 -RRB- denotes ]
T34259 717-718 -COMMA- denotes ,
T56176 719-720 -LRB- denotes [
T43975 720-722 CD denotes 14
T89437 722-723 -RRB- denotes ]
T32040 725-727 IN denotes In
T92103 728-738 JJ denotes particular
T46259 738-739 -COMMA- denotes ,
T37699 740-743 DT denotes the
T72545 744-745 NN denotes S
T24131 746-753 NN denotes protein
T44437 754-756 IN denotes of
T20264 757-760 DT denotes the
T45006 761-770 NN denotes 2019-nCoV
T85613 771-774 VBZ denotes has
T77820 775-776 DT denotes a
T51362 777-781 JJ denotes high
T86629 782-790 NN denotes sequence
T85333 791-799 NN denotes identity
T4126 800-802 IN denotes of
T23106 803-808 CD denotes 80–98
T47986 808-809 NN denotes %
T62529 810-814 IN denotes with
T47180 815-818 DT denotes the
T64906 819-820 NN denotes S
T55893 821-828 NN denotes protein
T84276 829-831 IN denotes of
T27337 832-835 NN denotes bat
T65227 836-845 JJ denotes SARS-like
T48841 846-850 NNS denotes CoVs
T43941 850-851 -COMMA- denotes ,
T76487 852-856 JJ denotes such
T69082 857-859 IN denotes as
T24341 860-869 JJ denotes SARSr-CoV
T77949 870-875 NN denotes ZXC21
T33016 876-877 NNP denotes S
T45981 877-878 -COMMA- denotes ,
T58714 879-883 NNP denotes ZC45
T47242 884-885 NNP denotes S
T24128 885-886 -COMMA- denotes ,
T33217 887-890 CC denotes and
T49688 891-897 NN denotes RaTG13
T48117 898-899 -LRB- denotes [
T8349 899-900 CD denotes 3
T82587 900-901 -RRB- denotes ]
T26826 903-911 RB denotes Moreover
T40424 911-912 -COMMA- denotes ,
T82603 913-915 IN denotes in
T83961 916-928 JJ denotes phylogenomic
T26439 929-934 NNS denotes trees
T36143 934-935 -COMMA- denotes ,
T1931 936-944 NNS denotes branches
T94548 945-948 IN denotes for
T9564 949-952 DT denotes the
T82190 953-962 NN denotes 2019-nCoV
T51998 963-966 VBP denotes are
T48884 967-969 IN denotes of
T84416 970-977 JJR denotes greater
T46091 978-984 NN denotes length
T44026 985-989 IN denotes than
T19745 990-995 DT denotes those
T66697 996-999 IN denotes for
T66659 1000-1003 DT denotes the
T22981 1004-1008 CD denotes 2003
T47496 1009-1017 NN denotes SARS-CoV
T18117 1017-1018 -COMMA- denotes ,
T90160 1019-1022 CC denotes and
T86256 1023-1032 RB denotes therefore
T89702 1033-1037 RBR denotes more
T19375 1038-1047 JJ denotes favorable
T58982 1048-1050 TO denotes to
T17546 1051-1055 NNS denotes bats
T69872 1058-1065 CD denotes 4.1.2.2
T72014 1067-1076 NNP denotes Rationale
T36633 1076-1077 -COLON- denotes :
T95726 1078-1081 NN denotes Bat
T12601 1082-1087 NN denotes serum
T14267 1088-1090 VBZ denotes is
T39971 1091-1094 RB denotes not
T40602 1095-1099 JJ denotes able
T35003 1100-1102 TO denotes to
T99887 1103-1114 RB denotes efficiently
T76540 1115-1125 VB denotes neutralize
T13120 1126-1134 NN denotes SARS-CoV
T35896 1135-1138 DT denotes The
T64598 1139-1144 NN denotes range
T32273 1145-1147 IN denotes of
T17280 1148-1152 NNS denotes bats
T96367 1152-1153 -COMMA- denotes ,
T68610 1154-1163 VBG denotes belonging
T26256 1164-1166 TO denotes to
T16732 1167-1170 DT denotes the
T46544 1171-1176 NN denotes genus
T77475 1177-1188 NN denotes Rhinolophus
T40616 1189-1190 -LRB- denotes (
T58340 1190-1199 NN denotes horseshoe
T54336 1200-1204 NNS denotes bats
T12834 1204-1205 -RRB- denotes )
T98779 1206-1209 CC denotes and
T38088 1210-1213 DT denotes the
T30678 1214-1220 NN denotes family
T95468 1221-1234 NNP denotes Rhinolophidae
T49538 1234-1235 -COMMA- denotes ,
T57549 1236-1243 VBP denotes produce
T22931 1244-1247 DT denotes the
T96372 1248-1256 JJ denotes SARS-CoV
T96617 1257-1265 NN denotes antibody
T26331 1266-1267 -LRB- denotes [
T79958 1267-1269 CD denotes 12
T94954 1269-1270 -RRB- denotes ]
T31150 1272-1282 NN denotes Polymerase
T34558 1283-1288 NN denotes chain
T29624 1289-1297 NN denotes reaction
T20040 1298-1299 -LRB- denotes (
T66963 1299-1302 NN denotes PCR
T86417 1302-1303 -RRB- denotes )
T74170 1304-1308 MD denotes will
T58244 1309-1316 VB denotes confirm
T34209 1317-1320 DT denotes the
T81644 1321-1329 NN denotes presence
T94659 1330-1332 IN denotes of
T93490 1333-1341 NN denotes SARS-CoV
T60580 1342-1354 NN denotes nucleocapsid
T19399 1355-1356 -LRB- denotes (
T43412 1356-1357 NN denotes N
T97174 1357-1358 -RRB- denotes )
T57901 1359-1362 CC denotes and
T74666 1363-1373 NN denotes polymerase
T46614 1374-1375 -LRB- denotes (
T2670 1375-1376 NN denotes P
T11868 1376-1377 -RRB- denotes )
T4452 1378-1386 NNS denotes proteins
T18709 1387-1389 IN denotes in
T53625 1390-1395 JJ denotes fecal
T33015 1396-1403 NNS denotes samples
T22237 1404-1406 IN denotes if
T47566 1407-1409 DT denotes an
T64813 1410-1420 JJ denotes individual
T7157 1421-1424 NN denotes bat
T16625 1425-1430 VBG denotes being
T28791 1431-1443 JJ denotes seropositive
T57534 1444-1447 IN denotes for
T8160 1448-1456 NN denotes SARS-CoV
T13336 1457-1458 -LRB- denotes [
T37204 1458-1460 CD denotes 12
T59200 1460-1461 -RRB- denotes ]
T53492 1463-1468 EX denotes There
T25066 1469-1471 VBZ denotes is
T54103 1472-1473 DT denotes a
T67673 1474-1485 JJ denotes significant
T81378 1486-1492 NN denotes degree
T78835 1493-1495 IN denotes of
T5389 1496-1507 NN denotes resemblance
T55726 1508-1510 IN denotes of
T9133 1511-1518 JJR denotes greater
T51866 1519-1523 IN denotes than
T67947 1524-1526 CD denotes 90
T67121 1526-1527 NN denotes %
T42920 1528-1530 IN denotes in
T98118 1531-1534 DT denotes the
T35947 1535-1545 NN denotes nucleotide
T39927 1546-1554 NN denotes sequence
T7432 1555-1557 IN denotes of
T69163 1558-1561 DT denotes the
T80745 1562-1567 JJ denotes viral
T20946 1568-1575 NNS denotes genomes
T60639 1576-1583 IN denotes between
T51508 1584-1590 NN denotes SL-CoV
T38342 1591-1594 NN denotes Rp3
T27996 1595-1596 -LRB- denotes [
T68906 1596-1598 CD denotes 12
T31717 1598-1599 -RRB- denotes ]
T45580 1600-1603 CC denotes and
T28138 1604-1607 DT denotes the
T93675 1608-1612 NN denotes Tor2
T7628 1613-1619 NN denotes strain
T18229 1620-1622 IN denotes of
T74591 1623-1631 NN denotes SARS-CoV
T32520 1632-1633 NN denotes –
T53721 1634-1639 WDT denotes which
T18272 1640-1643 VBD denotes was
T81326 1644-1652 VBN denotes isolated
T85814 1653-1655 IN denotes in
T8090 1656-1663 NNP denotes Toronto
T96099 1664-1665 -LRB- denotes [
T48626 1665-1667 CD denotes 15
T63640 1667-1668 -RRB- denotes ]
T47685 1670-1673 DT denotes The
T95952 1674-1685 NNS denotes differences
T83153 1686-1688 IN denotes in
T89898 1689-1692 DT denotes the
T5455 1693-1699 NN denotes genome
T57783 1700-1709 NNS denotes sequences
T32904 1710-1712 IN denotes of
T64654 1713-1721 NN denotes SARS-CoV
T33080 1722-1724 IN denotes in
T20399 1725-1728 DT denotes the
T6021 1729-1732 CD denotes two
T91889 1733-1740 NNS denotes species
T16420 1741-1746 VBP denotes occur
T17928 1747-1753 RB denotes merely
T18957 1754-1756 IN denotes in
T30016 1757-1760 DT denotes the
T55882 1761-1762 NN denotes S
T98573 1763-1767 NN denotes gene
T52934 1768-1769 NN denotes –
T45076 1770-1775 WDT denotes which
T16269 1776-1783 VBZ denotes encodes
T35597 1784-1787 DT denotes the
T87578 1788-1790 NN denotes S1
T90762 1791-1797 NN denotes domain
T47778 1798-1800 IN denotes of
T34405 1801-1804 DT denotes the
T12863 1805-1816 NN denotes coronavirus
T32427 1817-1822 NN denotes spike
T45316 1823-1830 NN denotes protein
T15815 1831-1834 CC denotes and
T13365 1835-1843 VBZ denotes contains
T22966 1844-1851 NNS denotes regions
T35366 1852-1856 IN denotes with
T87135 1857-1861 JJ denotes high
T71483 1862-1870 NN denotes mutation
T52732 1871-1876 NNS denotes rates
T42165 1877-1878 -LRB- denotes [
T12526 1878-1880 CD denotes 12
T31829 1880-1881 -RRB- denotes ]
T48594 1883-1886 DT denotes The
T43996 1887-1900 NNS denotes coronaviruses
T64690 1901-1909 RB denotes commonly
T94005 1910-1917 VBP denotes possess
T52748 1918-1922 CD denotes five
T25177 1923-1927 JJ denotes open
T13269 1928-1935 NN denotes reading
T8033 1936-1942 NNS denotes frames
T6150 1943-1944 -LRB- denotes (
T75001 1944-1947 NN denotes ORF
T23258 1947-1948 -RRB- denotes )
T31588 1949-1953 WDT denotes that
T98349 1954-1963 VBP denotes correlate
T84544 1964-1968 IN denotes with
T88926 1969-1972 DT denotes the
T71973 1973-1983 NN denotes production
T7216 1984-1986 IN denotes of
T15921 1987-1990 DT denotes the
T20599 1991-2000 NN denotes replicase
T83272 2001-2012 NN denotes polyprotein
T61529 2013-2014 -LRB- denotes (
T58827 2014-2015 NN denotes P
T90447 2015-2016 -RRB- denotes )
T70573 2016-2017 -COMMA- denotes ,
T42366 2018-2021 DT denotes the
T58682 2022-2027 NN denotes spike
T13646 2028-2029 -LRB- denotes (
T70419 2029-2030 NN denotes S
T16399 2030-2031 -RRB- denotes )
T28149 2031-2032 -COMMA- denotes ,
T93891 2033-2041 NN denotes envelope
T12498 2042-2043 -LRB- denotes (
T49731 2043-2044 NN denotes E
T56677 2044-2045 -RRB- denotes )
T64104 2045-2046 -COMMA- denotes ,
T31208 2047-2050 CC denotes and
T67550 2051-2059 NN denotes membrane
T28810 2060-2061 -LRB- denotes (
T38106 2061-2062 NN denotes M
T30434 2062-2063 -RRB- denotes )
T87007 2064-2077 NNS denotes glycoproteins
T95580 2078-2081 CC denotes and
T76152 2082-2085 DT denotes the
T84704 2086-2098 NN denotes nucleocapsid
T19426 2099-2100 -LRB- denotes (
T15241 2100-2101 NN denotes N
T55062 2101-2102 -RRB- denotes )
T28738 2103-2110 NN denotes protein
T87202 2112-2115 DT denotes The
T16130 2116-2121 JJ denotes human
T9407 2122-2130 NN denotes SARS-CoV
T28228 2131-2135 NN denotes Tor2
T71564 2136-2139 CC denotes and
T14942 2140-2143 NN denotes bat
T87890 2144-2150 NN denotes SL-CoV
T92515 2151-2154 NN denotes Rp3
T40210 2155-2162 NNS denotes strains
T99566 2163-2169 VBP denotes remain
T25851 2170-2174 JJR denotes more
T93008 2175-2179 IN denotes than
T9385 2180-2182 CD denotes 90
T64424 2182-2183 NN denotes %
T39551 2184-2193 JJ denotes identical
T74931 2194-2196 IN denotes at
T24944 2197-2200 DT denotes the
T54178 2201-2209 NNS denotes proteins
T40259 2210-2211 NN denotes P
T38116 2211-2212 -COMMA- denotes ,
T14257 2213-2214 NN denotes E
T31483 2214-2215 -COMMA- denotes ,
T90324 2216-2217 NN denotes M
T13349 2217-2218 -COMMA- denotes ,
T43323 2219-2222 CC denotes and
T37619 2223-2225 NNP denotes N.
T58268 2226-2229 DT denotes the
T53333 2230-2237 NN denotes protein
T21482 2238-2239 NN denotes S
T15154 2240-2248 VBZ denotes consists
T15378 2249-2251 IN denotes of
T8893 2252-2255 CD denotes two
T80047 2256-2260 JJ denotes main
T39154 2261-2268 NNS denotes domains
T63966 2268-2269 -COLON- denotes :
T14525 2270-2271 LS denotes 1
T24485 2271-2272 -RRB- denotes )
T14573 2273-2276 DT denotes the
T2720 2277-2279 NN denotes S1
T53057 2280-2286 NN denotes domain
T52808 2287-2294 VBZ denotes conveys
T40693 2295-2298 DT denotes the
T99923 2299-2303 NN denotes role
T37838 2304-2306 IN denotes of
T16526 2307-2315 NN denotes receptor
T67511 2316-2323 NN denotes binding
T34590 2324-2327 CC denotes and
T11269 2328-2329 LS denotes 2
T5490 2329-2330 -RRB- denotes )
T64378 2331-2334 DT denotes the
T5826 2335-2337 NN denotes S2
T79439 2338-2344 NN denotes domain
T56787 2345-2352 VBZ denotes assumes
T43097 2353-2356 DT denotes the
T86961 2357-2361 NN denotes role
T18963 2362-2364 IN denotes of
T97770 2365-2368 DT denotes the
T77887 2369-2375 NN denotes fusion
T55259 2376-2378 IN denotes of
T85369 2379-2384 JJ denotes viral
T77390 2385-2388 CC denotes and
T15313 2389-2398 NN denotes host-cell
T74327 2399-2408 NNS denotes membranes
T22912 2410-2412 IN denotes In
T58392 2413-2423 JJ denotes particular
T84749 2423-2424 -COMMA- denotes ,
T94019 2425-2428 DT denotes the
T82008 2429-2434 JJ denotes human
T43891 2435-2443 NN denotes SARS-CoV
T54296 2444-2448 NN denotes Tor2
T34731 2449-2455 NN denotes strain
T75489 2456-2461 VBZ denotes shows
T56235 2462-2463 DT denotes a
T89657 2464-2474 JJ denotes noticeable
T75815 2475-2481 NN denotes degree
T92988 2482-2484 IN denotes of
T77130 2485-2495 NN denotes difference
T40843 2496-2498 IN denotes in
T41545 2499-2502 DT denotes the
T39219 2503-2505 NN denotes S1
T50007 2506-2512 NN denotes domain
T5367 2513-2517 IN denotes from
T8711 2518-2521 DT denotes the
T66860 2522-2525 NN denotes bat
T62453 2526-2532 NN denotes SL-CoV
T71117 2533-2536 NN denotes Rp3
T88382 2537-2543 NN denotes strain
T88085 2545-2549 DT denotes This
T48832 2550-2559 NN denotes diversity
T76304 2560-2565 MD denotes would
T15359 2566-2573 VB denotes suffice
T62259 2574-2576 TO denotes to
T18888 2577-2584 VB denotes produce
T72744 2585-2595 JJ denotes functional
T24144 2596-2607 NNS denotes differences
T88673 2608-2615 IN denotes between
T38511 2616-2619 DT denotes the
T76844 2620-2627 NNS denotes species
T33948 2627-2628 -COMMA- denotes ,
T64840 2629-2632 CC denotes and
T43993 2633-2635 VBZ denotes is
T4517 2636-2638 DT denotes an
T84855 2639-2647 JJ denotes apparent
T42902 2648-2654 NN denotes reason
T40921 2655-2658 WRB denotes why
T70648 2659-2662 NN denotes bat
T53907 2663-2667 NNS denotes sera
T57340 2668-2674 VBG denotes having
T85409 2675-2679 JJ denotes high
T54783 2680-2686 NNS denotes levels
T45640 2687-2689 IN denotes of
T58628 2690-2704 JJ denotes cross-reactive
T52676 2705-2715 NNS denotes antibodies
T45941 2716-2719 RB denotes not
T27008 2720-2725 VBD denotes acted
T78461 2726-2737 RB denotes efficiently
T42258 2738-2740 TO denotes to
T33747 2741-2751 VB denotes neutralize
T77904 2752-2760 NN denotes SARS-CoV
R9155 T33856 T37831 arg1Of origin,of
R34142 T95515 T37831 arg2Of virus,of
R11743 T95515 T28355 arg1Of virus,the
R25437 T95515 T31802 arg1Of virus,2019-nCoV
R28087 T5376 T64814 arg1Of Hypothesis,–
R18514 T62169 T64814 arg2Of introduced,–
R46916 T87875 T46333 arg1Of It,has
R93896 T37752 T9092 arg1Of fluid,of
R25292 T42278 T9092 arg2Of patient,of
R26327 T42278 T49696 arg1Of patient,a
R92357 T42278 T77065 arg1Of patient,with
R79425 T56445 T77065 arg2Of SARS,with
R79797 T37752 T91231 arg1Of fluid,contained
R33601 T14876 T91231 arg2Of 2019-nCoV,contained
R47706 T14876 T55260 arg1Of 2019-nCoV,the
R82198 T76927 T41253 arg1Of sequencing,RNA
R9633 T55893 T62529 arg2Of protein,with
R8236 T55893 T47180 arg1Of protein,the
R37164 T55893 T64906 arg1Of protein,S
R27603 T55893 T84276 arg1Of protein,of
R84379 T48841 T84276 arg2Of CoVs,of
R59931 T48841 T27337 arg1Of CoVs,bat
R85967 T48841 T65227 arg1Of CoVs,SARS-like
R99461 T48841 T43941 arg1Of CoVs,","
R20816 T69082 T76487 arg1Of as,such
R77868 T48841 T69082 arg1Of CoVs,as
R32155 T28738 T95580 arg2Of protein,and
R84305 T84704 T76152 arg1Of nucleocapsid,the
R38913 T28738 T84704 arg1Of protein,nucleocapsid
R79602 T84704 T19426 arg1Of nucleocapsid,(
R89343 T15241 T19426 arg2Of N,(
R73040 T3323 T16328 arg1Of Serum,4.1.2
R54968 T3323 T79102 arg1Of Serum,from
R34638 T73342 T79102 arg2Of bats,from
R23464 T73342 T89375 arg1Of bats,with
R61751 T22412 T89375 arg2Of CoV,with
R39297 T22412 T36397 arg1Of CoV,SARS-like
R78999 T5376 T58124 arg1Of Hypothesis,4.1.2.1
R51882 T5376 T34741 arg1Of Hypothesis,:
R48542 T76343 T34741 arg2Of shed,:
R32918 T52998 T62090 arg1Of sequencing,whole-genome
R56076 T52998 T20323 arg1Of sequencing,and
R68735 T67504 T20323 arg2Of analysis,and
R11336 T67504 T7728 arg1Of analysis,phylogenetic
R90147 T20323 T76343 arg1Of and,shed
R93727 T36219 T76343 arg2Of light,shed
R47808 T76343 T40337 arg1Of shed,on
R66754 T33856 T40337 arg2Of origin,on
R25360 T33856 T54452 arg1Of origin,the
R78116 T62169 T46333 arg2Of introduced,has
R79879 T87875 T28188 arg1Of It,been
R23970 T62169 T28188 arg2Of introduced,been
R11663 T62169 T22492 arg1Of introduced,probably
R22009 T87875 T62169 arg2Of It,introduced
R21833 T62169 T13328 arg1Of introduced,from
R9730 T96521 T13328 arg2Of bats,from
R43289 T96521 T30811 arg1Of bats,to
R53501 T52514 T30811 arg2Of men,to
R14066 T46450 T28843 arg1Of sequencing,Genome
R80891 T46450 T27748 arg1Of sequencing,of
R29083 T52375 T27748 arg2Of sample,of
R55505 T52375 T27295 arg1Of sample,a
R70294 T52375 T62671 arg1Of sample,fecal
R95907 T52375 T93555 arg1Of sample,bat
R77496 T52375 T30106 arg1Of sample,","
R70744 T79240 T30106 arg2Of Rp3,","
R84750 T23533 T51658 arg1Of detect,","
R22256 T46450 T48337 arg1Of sequencing,could
R84362 T23533 T48337 arg2Of detect,could
R13690 T46450 T23533 arg1Of sequencing,detect
R81506 T48569 T23533 arg2Of isolate,detect
R60741 T48569 T45372 arg1Of isolate,an
R29203 T48569 T20680 arg1Of isolate,of
R55007 T19302 T20680 arg2Of coronaviruses,of
R77595 T48569 T18234 arg1Of isolate,","
R74345 T48569 T77212 arg1Of isolate,which
R82277 T48569 T37427 arg1Of isolate,was
R49235 T69281 T37427 arg2Of identical,was
R15724 T69281 T90838 arg1Of identical,almost
R26850 T48569 T69281 arg1Of isolate,identical
R99770 T69281 T30703 arg1Of identical,to
R99853 T21161 T30703 arg2Of agent,to
R34313 T21161 T45933 arg1Of agent,the
R90071 T21161 T53102 arg1Of agent,causative
R83498 T21161 T31651 arg1Of agent,of
R46891 T42133 T31651 arg2Of outbreak,of
R27084 T42133 T24092 arg1Of outbreak,the
R95994 T42133 T76932 arg1Of outbreak,SARS-CoV
R47434 T42133 T26029 arg1Of outbreak,of
R97280 T7676 T26029 arg2Of 2002–2003,of
R11853 T85900 T55417 arg1Of attained,Hence
R54546 T85900 T40490 arg1Of attained,","
R36475 T99577 T85900 arg1Of it,attained
R69085 T51053 T85900 arg2Of Rp3,attained
R2126 T51053 T84303 arg1Of Rp3,the
R94363 T51053 T99794 arg1Of Rp3,name
R84505 T51053 T28667 arg1Of Rp3,SARS-like
R51413 T51053 T13194 arg1Of Rp3,coronavirus
R38349 T51053 T40481 arg1Of Rp3,isolate
R28069 T51053 T84085 arg1Of Rp3,(
R49507 T96263 T84085 arg2Of Rp3,(
R98383 T15140 T84085 arg3Of ),(
R43398 T96263 T37600 arg1Of Rp3,SL-CoV
R58949 T85900 T87895 arg1Of attained,[
R31914 T40198 T87895 arg2Of 12,[
R93865 T79787 T87895 arg3Of ],[
R4610 T37752 T87849 arg1Of fluid,The
R17928 T37752 T82417 arg1Of fluid,bronchoalveolar
R63818 T37752 T31054 arg1Of fluid,lavage
R54661 T37752 T74238 arg1Of fluid,(
R50117 T3228 T74238 arg2Of BALF,(
R11221 T70930 T74238 arg3Of ),(
R27740 T76927 T21523 arg1Of sequencing,could
R2092 T61033 T21523 arg2Of reveal,could
R5221 T76927 T61033 arg1Of sequencing,reveal
R54859 T56862 T61033 arg2Of similarity,reveal
R81820 T17027 T57735 arg1Of 90,about
R26135 T56862 T17027 arg1Of similarity,90
R37944 T17027 T88762 arg1Of 90,%
R19722 T56862 T58084 arg1Of similarity,in
R26450 T42893 T58084 arg2Of nucleotides,in
R85800 T42893 T28737 arg1Of nucleotides,of
R6863 T41408 T28737 arg2Of coronavirus,of
R72528 T41408 T98581 arg1Of coronavirus,the
R98967 T41408 T54378 arg1Of coronavirus,novel
R17590 T58084 T8820 arg1Of in,and
R49869 T82233 T8820 arg2Of of,and
R76106 T56862 T82233 arg1Of similarity,of
R40705 T25315 T82233 arg2Of coronavirus,of
R21771 T25315 T87395 arg1Of coronavirus,SARS-like
R89495 T25315 T40001 arg1Of coronavirus,that
R12805 T25315 T50563 arg1Of coronavirus,had
R43366 T43308 T50563 arg2Of related,had
R19626 T43308 T73327 arg1Of related,previously
R71640 T25315 T43308 arg1Of coronavirus,related
R98847 T43308 T87528 arg1Of related,to
R56090 T18784 T87528 arg2Of bats,to
R53709 T18784 T21998 arg1Of bats,[
R55235 T45109 T21998 arg2Of 13,[
R4872 T62980 T21998 arg3Of ],[
R85928 T43308 T34259 arg1Of related,","
R66763 T43308 T56176 arg1Of related,[
R82331 T43975 T56176 arg2Of 14,[
R65672 T89437 T56176 arg3Of ],[
R60898 T85613 T32040 arg1Of has,In
R8931 T92103 T32040 arg2Of particular,In
R37482 T85613 T46259 arg1Of has,","
R69236 T24131 T37699 arg1Of protein,the
R90434 T24131 T72545 arg1Of protein,S
R42614 T24131 T44437 arg1Of protein,of
R23596 T45006 T44437 arg2Of 2019-nCoV,of
R11370 T45006 T20264 arg1Of 2019-nCoV,the
R80817 T24131 T85613 arg1Of protein,has
R49961 T85333 T85613 arg2Of identity,has
R54652 T85333 T77820 arg1Of identity,a
R29265 T85333 T51362 arg1Of identity,high
R4874 T85333 T86629 arg1Of identity,sequence
R2751 T85333 T4126 arg1Of identity,of
R99494 T47986 T4126 arg2Of %,of
R81734 T47986 T23106 arg1Of %,80–98
R65938 T85613 T62529 arg1Of has,with
R59047 T33217 T69082 arg2Of and,as
R62932 T33016 T24341 arg1Of S,SARSr-CoV
R11481 T33016 T77949 arg1Of S,ZXC21
R38926 T33016 T45981 arg1Of S,","
R47300 T47242 T45981 arg2Of S,","
R77326 T47242 T58714 arg1Of S,ZC45
R75080 T33217 T24128 arg1Of and,","
R91783 T45981 T33217 arg1Of ",",and
R80254 T49688 T33217 arg2Of RaTG13,and
R54614 T49688 T48117 arg1Of RaTG13,[
R65396 T8349 T48117 arg2Of 3,[
R80187 T82587 T48117 arg3Of ],[
R79793 T51998 T26826 arg1Of are,Moreover
R43834 T51998 T40424 arg1Of are,","
R27649 T51998 T82603 arg1Of are,in
R96220 T26439 T82603 arg2Of trees,in
R84762 T26439 T83961 arg1Of trees,phylogenomic
R83564 T51998 T36143 arg1Of are,","
R35953 T1931 T94548 arg1Of branches,for
R50313 T82190 T94548 arg2Of 2019-nCoV,for
R39618 T82190 T9564 arg1Of 2019-nCoV,the
R26497 T1931 T51998 arg1Of branches,are
R13764 T19375 T51998 arg2Of favorable,are
R81075 T51998 T48884 arg1Of are,of
R51585 T46091 T48884 arg2Of length,of
R73778 T46091 T84416 arg1Of length,greater
R53908 T51998 T44026 arg1Of are,than
R52362 T19745 T44026 arg2Of those,than
R18993 T19745 T66697 arg1Of those,for
R89736 T47496 T66697 arg2Of SARS-CoV,for
R79769 T47496 T66659 arg1Of SARS-CoV,the
R19666 T47496 T22981 arg1Of SARS-CoV,2003
R93374 T51998 T18117 arg1Of are,","
R50127 T86256 T90160 arg1Of therefore,and
R3485 T19375 T86256 arg1Of favorable,therefore
R2351 T19375 T89702 arg1Of favorable,more
R91193 T1931 T19375 arg1Of branches,favorable
R80199 T19375 T58982 arg1Of favorable,to
R45246 T17546 T58982 arg2Of bats,to
R51801 T72014 T69872 arg1Of Rationale,4.1.2.2
R69842 T72014 T36633 arg1Of Rationale,:
R50103 T12601 T95726 arg1Of serum,Bat
R3232 T12601 T14267 arg1Of serum,is
R29891 T40602 T14267 arg2Of able,is
R34824 T14267 T39971 arg1Of is,not
R55122 T12601 T40602 arg1Of serum,able
R34792 T76540 T40602 arg2Of neutralize,able
R85229 T76540 T35003 arg1Of neutralize,to
R44114 T76540 T99887 arg1Of neutralize,efficiently
R91747 T12601 T76540 arg1Of serum,neutralize
R74972 T13120 T76540 arg2Of SARS-CoV,neutralize
R31648 T64598 T35896 arg1Of range,The
R6737 T64598 T32273 arg1Of range,of
R29965 T17280 T32273 arg2Of bats,of
R8521 T64598 T96367 arg1Of range,","
R75414 T64598 T68610 arg1Of range,belonging
R52920 T68610 T26256 arg1Of belonging,to
R25043 T98779 T26256 arg2Of and,to
R63472 T77475 T16732 arg1Of Rhinolophus,the
R84668 T77475 T46544 arg1Of Rhinolophus,genus
R37239 T77475 T40616 arg1Of Rhinolophus,(
R4822 T54336 T40616 arg2Of bats,(
R79578 T12834 T40616 arg3Of ),(
R13846 T54336 T58340 arg1Of bats,horseshoe
R16448 T77475 T98779 arg1Of Rhinolophus,and
R69810 T95468 T98779 arg2Of Rhinolophidae,and
R98693 T95468 T38088 arg1Of Rhinolophidae,the
R42265 T95468 T30678 arg1Of Rhinolophidae,family
R72891 T57549 T49538 arg1Of produce,","
R35854 T64598 T57549 arg1Of range,produce
R82422 T96617 T57549 arg2Of antibody,produce
R44599 T96617 T22931 arg1Of antibody,the
R79816 T96617 T96372 arg1Of antibody,SARS-CoV
R16846 T57549 T26331 arg1Of produce,[
R65903 T79958 T26331 arg2Of 12,[
R83493 T94954 T26331 arg3Of ],[
R87454 T29624 T31150 arg1Of reaction,Polymerase
R47188 T29624 T34558 arg1Of reaction,chain
R23123 T29624 T20040 arg1Of reaction,(
R56055 T66963 T20040 arg2Of PCR,(
R41002 T86417 T20040 arg3Of ),(
R3787 T29624 T74170 arg1Of reaction,will
R27411 T58244 T74170 arg2Of confirm,will
R79509 T29624 T58244 arg1Of reaction,confirm
R60124 T81644 T58244 arg2Of presence,confirm
R46480 T81644 T34209 arg1Of presence,the
R95610 T81644 T94659 arg1Of presence,of
R9378 T4452 T94659 arg2Of proteins,of
R84386 T60580 T93490 arg1Of nucleocapsid,SARS-CoV
R43418 T4452 T60580 arg1Of proteins,nucleocapsid
R27190 T60580 T19399 arg1Of nucleocapsid,(
R12230 T43412 T19399 arg2Of N,(
R48861 T97174 T19399 arg3Of ),(
R70394 T60580 T57901 arg1Of nucleocapsid,and
R41419 T74666 T57901 arg2Of polymerase,and
R80630 T4452 T74666 arg1Of proteins,polymerase
R36020 T74666 T46614 arg1Of polymerase,(
R92245 T2670 T46614 arg2Of P,(
R83183 T11868 T46614 arg3Of ),(
R50332 T4452 T18709 arg1Of proteins,in
R79646 T33015 T18709 arg2Of samples,in
R31881 T33015 T53625 arg1Of samples,fecal
R81373 T81644 T22237 arg1Of presence,if
R98807 T7157 T22237 arg2Of bat,if
R81516 T7157 T47566 arg1Of bat,an
R84805 T7157 T64813 arg1Of bat,individual
R24256 T7157 T16625 arg1Of bat,being
R42875 T58244 T28791 arg1Of confirm,seropositive
R67857 T58244 T57534 arg1Of confirm,for
R74499 T8160 T57534 arg2Of SARS-CoV,for
R45292 T58244 T13336 arg1Of confirm,[
R3471 T37204 T13336 arg2Of 12,[
R27383 T59200 T13336 arg3Of ],[
R58960 T53492 T25066 arg1Of There,is
R27687 T81378 T25066 arg2Of degree,is
R58904 T81378 T54103 arg1Of degree,a
R98978 T81378 T67673 arg1Of degree,significant
R12027 T81378 T78835 arg1Of degree,of
R35363 T5389 T78835 arg2Of resemblance,of
R26377 T5389 T55726 arg1Of resemblance,of
R40584 T67121 T55726 arg2Of %,of
R47382 T67121 T9133 arg1Of %,greater
R47308 T9133 T51866 arg1Of greater,than
R38585 T67947 T51866 arg2Of 90,than
R98591 T25066 T42920 arg1Of is,in
R26290 T39927 T42920 arg2Of sequence,in
R33522 T39927 T98118 arg1Of sequence,the
R87768 T39927 T35947 arg1Of sequence,nucleotide
R91296 T39927 T7432 arg1Of sequence,of
R11170 T20946 T7432 arg2Of genomes,of
R26730 T20946 T69163 arg1Of genomes,the
R54869 T20946 T80745 arg1Of genomes,viral
R37496 T39927 T60639 arg1Of sequence,between
R41519 T45580 T60639 arg2Of and,between
R55856 T38342 T51508 arg1Of Rp3,SL-CoV
R71875 T38342 T27996 arg1Of Rp3,[
R41727 T68906 T27996 arg2Of 12,[
R25118 T31717 T27996 arg3Of ],[
R10272 T38342 T45580 arg1Of Rp3,and
R44862 T7628 T45580 arg2Of strain,and
R30046 T7628 T28138 arg1Of strain,the
R88472 T7628 T93675 arg1Of strain,Tor2
R99727 T7628 T18229 arg1Of strain,of
R5477 T32520 T18229 arg2Of –,of
R71375 T32520 T74591 arg1Of –,SARS-CoV
R57493 T7628 T53721 arg1Of strain,which
R7224 T7628 T18272 arg1Of strain,was
R40198 T81326 T18272 arg2Of isolated,was
R90058 T7628 T81326 arg2Of strain,isolated
R38579 T81326 T85814 arg1Of isolated,in
R59905 T8090 T85814 arg2Of Toronto,in
R32841 T8090 T96099 arg1Of Toronto,[
R83925 T48626 T96099 arg2Of 15,[
R28351 T63640 T96099 arg3Of ],[
R86154 T95952 T47685 arg1Of differences,The
R59901 T95952 T83153 arg1Of differences,in
R13170 T57783 T83153 arg2Of sequences,in
R31206 T57783 T89898 arg1Of sequences,the
R28343 T57783 T5455 arg1Of sequences,genome
R58032 T57783 T32904 arg1Of sequences,of
R22804 T64654 T32904 arg2Of SARS-CoV,of
R11953 T57783 T33080 arg1Of sequences,in
R85360 T91889 T33080 arg2Of species,in
R23015 T91889 T20399 arg1Of species,the
R17167 T91889 T6021 arg1Of species,two
R11084 T95952 T16420 arg1Of differences,occur
R30185 T16420 T17928 arg1Of occur,merely
R70591 T16420 T18957 arg1Of occur,in
R73328 T52934 T18957 arg2Of –,in
R7755 T52934 T30016 arg1Of –,the
R82456 T52934 T55882 arg1Of –,S
R92607 T52934 T98573 arg1Of –,gene
R57291 T52934 T45076 arg1Of –,which
R28962 T52934 T16269 arg1Of –,encodes
R53572 T90762 T16269 arg2Of domain,encodes
R53477 T90762 T35597 arg1Of domain,the
R21319 T90762 T87578 arg1Of domain,S1
R52481 T90762 T47778 arg1Of domain,of
R58901 T45316 T47778 arg2Of protein,of
R48472 T45316 T34405 arg1Of protein,the
R14799 T45316 T12863 arg1Of protein,coronavirus
R86586 T45316 T32427 arg1Of protein,spike
R42239 T16269 T15815 arg1Of encodes,and
R66376 T13365 T15815 arg2Of contains,and
R98214 T52934 T13365 arg1Of –,contains
R87600 T22966 T13365 arg2Of regions,contains
R65896 T22966 T35366 arg1Of regions,with
R57154 T52732 T35366 arg2Of rates,with
R88474 T52732 T87135 arg1Of rates,high
R2941 T52732 T71483 arg1Of rates,mutation
R74391 T52732 T42165 arg1Of rates,[
R3268 T12526 T42165 arg2Of 12,[
R81217 T31829 T42165 arg3Of ],[
R15441 T43996 T48594 arg1Of coronaviruses,The
R69640 T94005 T64690 arg1Of possess,commonly
R65914 T43996 T94005 arg1Of coronaviruses,possess
R90123 T31208 T94005 arg2Of and,possess
R70792 T8033 T52748 arg1Of frames,five
R14767 T8033 T25177 arg1Of frames,open
R65213 T8033 T13269 arg1Of frames,reading
R88451 T8033 T6150 arg1Of frames,(
R18185 T75001 T6150 arg2Of ORF,(
R77066 T23258 T6150 arg3Of ),(
R56978 T8033 T31588 arg1Of frames,that
R30550 T8033 T98349 arg1Of frames,correlate
R30372 T98349 T84544 arg1Of correlate,with
R28703 T28149 T84544 arg2Of ",",with
R77711 T28149 T88926 arg1Of ",",the
R14075 T71973 T7216 arg1Of production,of
R68163 T83272 T7216 arg2Of polyprotein,of
R87330 T83272 T15921 arg1Of polyprotein,the
R10873 T83272 T20599 arg1Of polyprotein,replicase
R63773 T83272 T61529 arg1Of polyprotein,(
R49475 T58827 T61529 arg2Of P,(
R32011 T90447 T61529 arg3Of ),(
R55450 T83272 T70573 arg1Of polyprotein,","
R19939 T58682 T70573 arg2Of spike,","
R57726 T58682 T42366 arg1Of spike,the
R81415 T58682 T13646 arg1Of spike,(
R67028 T70419 T13646 arg2Of S,(
R22891 T16399 T13646 arg3Of ),(
R7618 T71973 T28149 arg1Of production,","
R28844 T93891 T28149 arg2Of envelope,","
R38976 T93891 T12498 arg1Of envelope,(
R10580 T49731 T12498 arg2Of E,(
R68783 T56677 T12498 arg3Of ),(
R51174 T31208 T64104 arg1Of and,","
R37229 T8033 T31208 arg1Of frames,and
R42060 T95580 T31208 arg2Of and,and
R14672 T87007 T67550 arg1Of glycoproteins,membrane
R62325 T87007 T28810 arg1Of glycoproteins,(
R82170 T38106 T28810 arg2Of M,(
R6332 T30434 T28810 arg3Of ),(
R39650 T87007 T95580 arg1Of glycoproteins,and
R66652 T55062 T19426 arg3Of ),(
R86001 T40210 T87202 arg1Of strains,The
R96502 T40210 T16130 arg1Of strains,human
R65288 T40210 T9407 arg1Of strains,SARS-CoV
R43148 T40210 T28228 arg1Of strains,Tor2
R28796 T28228 T71564 arg1Of Tor2,and
R91863 T14942 T71564 arg2Of bat,and
R58409 T40210 T14942 arg1Of strains,bat
R74451 T40210 T87890 arg1Of strains,SL-CoV
R3058 T40210 T92515 arg1Of strains,Rp3
R96735 T40210 T99566 arg1Of strains,remain
R34689 T39551 T99566 arg2Of identical,remain
R88561 T64424 T25851 arg1Of %,more
R55663 T25851 T93008 arg1Of more,than
R28455 T9385 T93008 arg2Of 90,than
R17703 T39551 T64424 arg1Of identical,%
R45223 T40210 T39551 arg1Of strains,identical
R87952 T39551 T74931 arg1Of identical,at
R15458 T43323 T74931 arg2Of and,at
R92709 T54178 T24944 arg1Of proteins,the
R28920 T43323 T54178 arg1Of and,proteins
R86184 T40259 T38116 arg1Of P,","
R49439 T14257 T38116 arg2Of E,","
R20075 T38116 T31483 arg1Of ",",","
R6429 T90324 T31483 arg2Of M,","
R97074 T43323 T13349 arg1Of and,","
R74425 T31483 T43323 arg1Of ",",and
R37668 T37619 T43323 arg2Of N.,and
R50526 T21482 T58268 arg1Of S,the
R8023 T21482 T53333 arg1Of S,protein
R95633 T21482 T15154 arg1Of S,consists
R63361 T99566 T15154 arg2Of remain,consists
R86954 T15154 T15378 arg1Of consists,of
R60341 T39154 T15378 arg2Of domains,of
R99613 T39154 T8893 arg1Of domains,two
R31230 T39154 T80047 arg1Of domains,main
R59705 T15154 T63966 arg1Of consists,:
R88883 T34590 T14525 arg1Of and,1
R72465 T14525 T24485 arg1Of 1,)
R44663 T53057 T14573 arg1Of domain,the
R79868 T53057 T2720 arg1Of domain,S1
R16005 T53057 T52808 arg1Of domain,conveys
R78542 T99923 T52808 arg2Of role,conveys
R50015 T99923 T40693 arg1Of role,the
R10257 T99923 T37838 arg1Of role,of
R78547 T67511 T37838 arg2Of binding,of
R23527 T67511 T16526 arg1Of binding,receptor
R21561 T52808 T34590 arg1Of conveys,and
R39984 T56787 T34590 arg2Of assumes,and
R12695 T56787 T11269 arg1Of assumes,2
R13473 T11269 T5490 arg1Of 2,)
R60061 T79439 T64378 arg1Of domain,the
R25101 T79439 T5826 arg1Of domain,S2
R46737 T79439 T56787 arg1Of domain,assumes
R48455 T86961 T56787 arg2Of role,assumes
R37712 T86961 T43097 arg1Of role,the
R65917 T86961 T18963 arg1Of role,of
R69912 T77887 T18963 arg2Of fusion,of
R52486 T77887 T97770 arg1Of fusion,the
R82193 T77887 T55259 arg1Of fusion,of
R58046 T77390 T55259 arg2Of and,of
R25031 T85369 T77390 arg1Of viral,and
R98567 T74327 T77390 arg2Of membranes,and
R6769 T74327 T15313 arg1Of membranes,host-cell
R70941 T75489 T22912 arg1Of shows,In
R12304 T58392 T22912 arg2Of particular,In
R69868 T75489 T84749 arg1Of shows,","
R15307 T34731 T94019 arg1Of strain,the
R8771 T34731 T82008 arg1Of strain,human
R59200 T34731 T43891 arg1Of strain,SARS-CoV
R70624 T34731 T54296 arg1Of strain,Tor2
R41388 T34731 T75489 arg1Of strain,shows
R24559 T75815 T75489 arg2Of degree,shows
R31571 T75815 T56235 arg1Of degree,a
R39672 T75815 T89657 arg1Of degree,noticeable
R60526 T75815 T92988 arg1Of degree,of
R96985 T77130 T92988 arg2Of difference,of
R31050 T75815 T40843 arg1Of degree,in
R91771 T50007 T40843 arg2Of domain,in
R37356 T50007 T41545 arg1Of domain,the
R11328 T50007 T39219 arg1Of domain,S1
R99722 T75489 T5367 arg1Of shows,from
R30421 T88382 T5367 arg2Of strain,from
R11805 T88382 T8711 arg1Of strain,the
R62163 T88382 T66860 arg1Of strain,bat
R36619 T88382 T62453 arg1Of strain,SL-CoV
R87209 T88382 T71117 arg1Of strain,Rp3
R76244 T48832 T88085 arg1Of diversity,This
R58063 T48832 T76304 arg1Of diversity,would
R53923 T15359 T76304 arg2Of suffice,would
R77067 T48832 T15359 arg1Of diversity,suffice
R83702 T18888 T15359 arg2Of produce,suffice
R65549 T18888 T62259 arg1Of produce,to
R12434 T48832 T18888 arg1Of diversity,produce
R36890 T24144 T18888 arg2Of differences,produce
R93919 T24144 T72744 arg1Of differences,functional
R55612 T24144 T88673 arg1Of differences,between
R33869 T76844 T88673 arg2Of species,between
R84803 T76844 T38511 arg1Of species,the
R97873 T64840 T33948 arg1Of and,","
R54575 T15359 T64840 arg1Of suffice,and
R47614 T43993 T64840 arg2Of is,and
R51498 T48832 T43993 arg1Of diversity,is
R76165 T42902 T43993 arg2Of reason,is
R44752 T42902 T4517 arg1Of reason,an
R68071 T42902 T84855 arg1Of reason,apparent
R99391 T42902 T40921 arg1Of reason,why
R75140 T27008 T40921 arg2Of acted,why
R80634 T53907 T70648 arg1Of sera,bat
R18211 T53907 T57340 arg1Of sera,having
R14005 T54783 T57340 arg2Of levels,having
R53873 T54783 T85409 arg1Of levels,high
R89048 T54783 T45640 arg1Of levels,of
R48373 T52676 T45640 arg2Of antibodies,of
R98406 T52676 T58628 arg1Of antibodies,cross-reactive
R16698 T27008 T45941 arg1Of acted,not
R66698 T53907 T27008 arg1Of sera,acted
R94776 T27008 T78461 arg1Of acted,efficiently
R52117 T33747 T42258 arg1Of neutralize,to
R6095 T27008 T42258 modOf acted,to
R26977 T53907 T33747 arg1Of sera,neutralize
R17667 T77904 T33747 arg2Of SARS-CoV,neutralize

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T83 7-12 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T84 70-76 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T85 213-219 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T86 559-562 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 611-622 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T88 746-753 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 821-828 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T90 1082-1087 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T91 1257-1265 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T92 1378-1386 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T93 1535-1545 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T94 1568-1575 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T95 1693-1699 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 1763-1767 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T97 1823-1830 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T98 2064-2077 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T99 2103-2110 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 2201-2209 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T101 2230-2237 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 2394-2408 Body_part denotes cell membranes http://purl.org/sig/ont/fma/fma63841
T103 2394-2398 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T67 28-32 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T68 358-366 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 418-422 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 529-533 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 655-659 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 836-840 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 1009-1017 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T74 1126-1134 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 1248-1256 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 1333-1341 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 1448-1456 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 1623-1631 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T79 1713-1721 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 2122-2130 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 2435-2443 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 2752-2760 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T96 0-41 Sentence denotes 4.1.2 Serum from bats with SARS-like CoV
T97 43-212 Sentence denotes 4.1.2.1 Hypothesis: whole-genome sequencing and phylogenetic analysis shed light on the origin of the 2019-nCoV virus – It has been probably introduced from bats to men
T98 213-389 Sentence denotes Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003.
T99 390-470 Sentence denotes Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12].
T100 471-558 Sentence denotes The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV.
T101 559-724 Sentence denotes RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14].
T102 725-902 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].
T103 903-1056 Sentence denotes Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats.
T104 1058-1077 Sentence denotes 4.1.2.2 Rationale:
T105 1078-1134 Sentence denotes Bat serum is not able to efficiently neutralize SARS-CoV
T106 1135-1271 Sentence denotes The range of bats, belonging to the genus Rhinolophus (horseshoe bats) and the family Rhinolophidae, produce the SARS-CoV antibody [12].
T107 1272-1462 Sentence denotes Polymerase chain reaction (PCR) will confirm the presence of SARS-CoV nucleocapsid (N) and polymerase (P) proteins in fecal samples if an individual bat being seropositive for SARS-CoV [12].
T108 1463-1669 Sentence denotes There is a significant degree of resemblance of greater than 90% in the nucleotide sequence of the viral genomes between SL-CoV Rp3 [12] and the Tor2 strain of SARS-CoV – which was isolated in Toronto [15].
T109 1670-1882 Sentence denotes The differences in the genome sequences of SARS-CoV in the two species occur merely in the S gene – which encodes the S1 domain of the coronavirus spike protein and contains regions with high mutation rates [12].
T110 1883-2111 Sentence denotes The coronaviruses commonly possess five open reading frames (ORF) that correlate with the production of the replicase polyprotein (P), the spike (S), envelope (E), and membrane (M) glycoproteins and the nucleocapsid (N) protein.
T111 2112-2269 Sentence denotes The human SARS-CoV Tor2 and bat SL-CoV Rp3 strains remain more than 90% identical at the proteins P, E, M, and N. the protein S consists of two main domains:
T112 2270-2409 Sentence denotes 1) the S1 domain conveys the role of receptor binding and 2) the S2 domain assumes the role of the fusion of viral and host-cell membranes.
T113 2410-2544 Sentence denotes In particular, the human SARS-CoV Tor2 strain shows a noticeable degree of difference in the S1 domain from the bat SL-CoV Rp3 strain.
T114 2545-2761 Sentence denotes This diversity would suffice to produce functional differences between the species, and is an apparent reason why bat sera having high levels of cross-reactive antibodies not acted efficiently to neutralize SARS-CoV.

2_test

Id Subject Object Predicate Lexical cue
32413736-16195424-48112970 466-468 16195424 denotes 12
32413736-16195424-48112971 1267-1269 16195424 denotes 12
32413736-16195424-48112972 1458-1460 16195424 denotes 12
32413736-16195424-48112973 1596-1598 16195424 denotes 12
32413736-12730501-48112974 1665-1667 12730501 denotes 15
32413736-16195424-48112975 1878-1880 16195424 denotes 12
T82223 466-468 16195424 denotes 12
T62085 1267-1269 16195424 denotes 12
T33865 1458-1460 16195424 denotes 12
T81204 1596-1598 16195424 denotes 12
T68046 1665-1667 12730501 denotes 15
T5396 1878-1880 16195424 denotes 12