PMC:7200337 / 90125-91400 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7200337","sourcedb":"PMC","sourceid":"7200337","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7200337","text":"Several studies have begun to report the cellular programs that may contribute to the cytokine storm detected in COVID-19 patients. One group reported that in the context of generalized lymphopenia, certain subsets of CD4 T cells that express GM-CSF and IL-6 are more abundant in severe COVID-19 patients than in COVID-19 patients who do not require intensive care (Zhou et al., 2020b). Reports that other major proinflammatory cytokines (TNF-α, IFN-ɣ, IL-2) and chemokines (CCL2, CCL3, CCL4) are elevated underscore a potentially pathogenic TH1/2 program in COVID-19 (Diao et al., 2020, Giamarellos-Bourboulis et al., 2020). Histological and single-cell analyses identified monocytes and macrophages as other potent sources of inflammatory cytokines in COVID-19 cytokine storm (Chen et al., 2020h, Giamarellos-Bourboulis et al., 2020, Law et al., 2005, Moore and June, 2020, Zhou et al., 2020b). Studies of other betacoronavirus infections, including SARS-CoV-1 and MERS-CoV, have also identified similar hyperactivation of monocytes, macrophages, and DCs as a driver of cytokine-mediated immunopathology in humans (Cheung et al., 2005, Chien et al., 2006, Huang et al., 2020c, Konig et al., 2020, Wang et al., 2005, Wong et al., 2004, Xu et al., 2020b, Zhou et al., 2020b).","tracks":[{"project":"2_test","denotations":[{"id":"32505227-15860669-46575411","span":{"begin":848,"end":852},"obj":"15860669"},{"id":"32505227-32303591-46575412","span":{"begin":870,"end":874},"obj":"32303591"},{"id":"32505227-15919935-46575413","span":{"begin":1132,"end":1136},"obj":"15919935"},{"id":"32505227-17052299-46575414","span":{"begin":1152,"end":1156},"obj":"17052299"},{"id":"32505227-15888207-46575415","span":{"begin":1212,"end":1216},"obj":"15888207"},{"id":"32505227-15030519-46575416","span":{"begin":1231,"end":1235},"obj":"15030519"},{"id":"T3486","span":{"begin":848,"end":852},"obj":"15860669"},{"id":"T86573","span":{"begin":870,"end":874},"obj":"32303591"},{"id":"T99556","span":{"begin":1132,"end":1136},"obj":"15919935"},{"id":"T42792","span":{"begin":1152,"end":1156},"obj":"17052299"},{"id":"T45143","span":{"begin":1212,"end":1216},"obj":"15888207"},{"id":"T73456","span":{"begin":1231,"end":1235},"obj":"15030519"}],"attributes":[{"subj":"32505227-15860669-46575411","pred":"source","obj":"2_test"},{"subj":"32505227-32303591-46575412","pred":"source","obj":"2_test"},{"subj":"32505227-15919935-46575413","pred":"source","obj":"2_test"},{"subj":"32505227-17052299-46575414","pred":"source","obj":"2_test"},{"subj":"32505227-15888207-46575415","pred":"source","obj":"2_test"},{"subj":"32505227-15030519-46575416","pred":"source","obj":"2_test"},{"subj":"T3486","pred":"source","obj":"2_test"},{"subj":"T86573","pred":"source","obj":"2_test"},{"subj":"T99556","pred":"source","obj":"2_test"},{"subj":"T42792","pred":"source","obj":"2_test"},{"subj":"T45143","pred":"source","obj":"2_test"},{"subj":"T73456","pred":"source","obj":"2_test"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T708","span":{"begin":86,"end":94},"obj":"Body_part"},{"id":"T709","span":{"begin":224,"end":229},"obj":"Body_part"},{"id":"T710","span":{"begin":246,"end":249},"obj":"Body_part"},{"id":"T711","span":{"begin":428,"end":437},"obj":"Body_part"},{"id":"T712","span":{"begin":453,"end":457},"obj":"Body_part"},{"id":"T713","span":{"begin":463,"end":473},"obj":"Body_part"},{"id":"T714","span":{"begin":650,"end":654},"obj":"Body_part"},{"id":"T715","span":{"begin":675,"end":684},"obj":"Body_part"},{"id":"T716","span":{"begin":689,"end":700},"obj":"Body_part"},{"id":"T717","span":{"begin":741,"end":750},"obj":"Body_part"},{"id":"T718","span":{"begin":763,"end":771},"obj":"Body_part"},{"id":"T719","span":{"begin":1025,"end":1034},"obj":"Body_part"},{"id":"T720","span":{"begin":1036,"end":1047},"obj":"Body_part"},{"id":"T721","span":{"begin":1072,"end":1080},"obj":"Body_part"}],"attributes":[{"id":"A708","pred":"fma_id","subj":"T708","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A709","pred":"fma_id","subj":"T709","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A710","pred":"fma_id","subj":"T710","obj":"http://purl.org/sig/ont/fma/fma20935"},{"id":"A711","pred":"fma_id","subj":"T711","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A712","pred":"fma_id","subj":"T712","obj":"http://purl.org/sig/ont/fma/fma84051"},{"id":"A713","pred":"fma_id","subj":"T713","obj":"http://purl.org/sig/ont/fma/fma241981"},{"id":"A714","pred":"fma_id","subj":"T714","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A715","pred":"fma_id","subj":"T715","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A716","pred":"fma_id","subj":"T716","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A717","pred":"fma_id","subj":"T717","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A718","pred":"fma_id","subj":"T718","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A719","pred":"fma_id","subj":"T719","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A720","pred":"fma_id","subj":"T720","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A721","pred":"fma_id","subj":"T721","obj":"http://purl.org/sig/ont/fma/fma84050"},{"subj":"T708","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T709","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T710","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T711","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T712","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T713","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T714","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T715","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T716","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T717","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T718","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T719","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T720","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T721","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T512","span":{"begin":113,"end":121},"obj":"Disease"},{"id":"T513","span":{"begin":186,"end":197},"obj":"Disease"},{"id":"T514","span":{"begin":287,"end":295},"obj":"Disease"},{"id":"T515","span":{"begin":313,"end":321},"obj":"Disease"},{"id":"T516","span":{"begin":559,"end":567},"obj":"Disease"},{"id":"T517","span":{"begin":754,"end":762},"obj":"Disease"},{"id":"T518","span":{"begin":930,"end":940},"obj":"Disease"},{"id":"T519","span":{"begin":952,"end":960},"obj":"Disease"}],"attributes":[{"id":"A512","pred":"mondo_id","subj":"T512","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A513","pred":"mondo_id","subj":"T513","obj":"http://purl.obolibrary.org/obo/MONDO_0003783"},{"id":"A514","pred":"mondo_id","subj":"T514","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A515","pred":"mondo_id","subj":"T515","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A516","pred":"mondo_id","subj":"T516","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A517","pred":"mondo_id","subj":"T517","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A518","pred":"mondo_id","subj":"T518","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A519","pred":"mondo_id","subj":"T519","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T512","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T513","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T514","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T515","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T516","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T517","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T518","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T519","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T946","span":{"begin":218,"end":221},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T947","span":{"begin":222,"end":229},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T948","span":{"begin":453,"end":457},"obj":"http://purl.obolibrary.org/obo/PR_000001379"},{"id":"T949","span":{"begin":517,"end":518},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T950","span":{"begin":650,"end":654},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T951","span":{"begin":675,"end":684},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T952","span":{"begin":1025,"end":1034},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T953","span":{"begin":1060,"end":1061},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T954","span":{"begin":1109,"end":1115},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T946","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T947","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T948","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T949","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T950","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T951","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T952","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T953","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T954","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T279","span":{"begin":136,"end":141},"obj":"Chemical"},{"id":"T280","span":{"begin":243,"end":245},"obj":"Chemical"},{"id":"T281","span":{"begin":254,"end":256},"obj":"Chemical"},{"id":"T283","span":{"begin":453,"end":455},"obj":"Chemical"}],"attributes":[{"id":"A279","pred":"chebi_id","subj":"T279","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"},{"id":"A280","pred":"chebi_id","subj":"T280","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A281","pred":"chebi_id","subj":"T281","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A282","pred":"chebi_id","subj":"T281","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A283","pred":"chebi_id","subj":"T283","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A284","pred":"chebi_id","subj":"T283","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"subj":"T279","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T280","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T281","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T283","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T52","span":{"begin":86,"end":100},"obj":"Phenotype"},{"id":"T53","span":{"begin":186,"end":197},"obj":"Phenotype"},{"id":"T54","span":{"begin":763,"end":777},"obj":"Phenotype"}],"attributes":[{"id":"A52","pred":"hp_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/HP_0033041"},{"id":"A53","pred":"hp_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/HP_0001888"},{"id":"A54","pred":"hp_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/HP_0033041"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2960","span":{"begin":218,"end":221},"obj":"Gene"},{"id":"2961","span":{"begin":243,"end":249},"obj":"Gene"},{"id":"2962","span":{"begin":254,"end":258},"obj":"Gene"},{"id":"2963","span":{"begin":439,"end":444},"obj":"Gene"},{"id":"2964","span":{"begin":446,"end":451},"obj":"Gene"},{"id":"2965","span":{"begin":453,"end":457},"obj":"Gene"},{"id":"2966","span":{"begin":475,"end":479},"obj":"Gene"},{"id":"2967","span":{"begin":481,"end":485},"obj":"Gene"},{"id":"2968","span":{"begin":487,"end":491},"obj":"Gene"},{"id":"2969","span":{"begin":542,"end":547},"obj":"Gene"},{"id":"2970","span":{"begin":79,"end":81},"obj":"Gene"},{"id":"2971","span":{"begin":27,"end":29},"obj":"Gene"},{"id":"2972","span":{"begin":122,"end":130},"obj":"Species"},{"id":"2973","span":{"begin":296,"end":304},"obj":"Species"},{"id":"2974","span":{"begin":322,"end":330},"obj":"Species"},{"id":"2975","span":{"begin":914,"end":929},"obj":"Species"},{"id":"2976","span":{"begin":952,"end":960},"obj":"Species"},{"id":"2977","span":{"begin":967,"end":975},"obj":"Species"},{"id":"2978","span":{"begin":1109,"end":1115},"obj":"Species"},{"id":"2979","span":{"begin":113,"end":121},"obj":"Disease"},{"id":"2980","span":{"begin":186,"end":197},"obj":"Disease"},{"id":"2981","span":{"begin":287,"end":295},"obj":"Disease"},{"id":"2982","span":{"begin":313,"end":321},"obj":"Disease"},{"id":"2983","span":{"begin":559,"end":567},"obj":"Disease"},{"id":"2984","span":{"begin":754,"end":762},"obj":"Disease"},{"id":"2985","span":{"begin":930,"end":940},"obj":"Disease"}],"attributes":[{"id":"A2960","pred":"tao:has_database_id","subj":"2960","obj":"Gene:920"},{"id":"A2961","pred":"tao:has_database_id","subj":"2961","obj":"Gene:1437"},{"id":"A2962","pred":"tao:has_database_id","subj":"2962","obj":"Gene:3569"},{"id":"A2963","pred":"tao:has_database_id","subj":"2963","obj":"Gene:7124"},{"id":"A2964","pred":"tao:has_database_id","subj":"2964","obj":"Gene:3458"},{"id":"A2965","pred":"tao:has_database_id","subj":"2965","obj":"Gene:3558"},{"id":"A2966","pred":"tao:has_database_id","subj":"2966","obj":"Gene:6347"},{"id":"A2967","pred":"tao:has_database_id","subj":"2967","obj":"Gene:6348"},{"id":"A2968","pred":"tao:has_database_id","subj":"2968","obj":"Gene:6351"},{"id":"A2969","pred":"tao:has_database_id","subj":"2969","obj":"Gene:51497"},{"id":"A2970","pred":"tao:has_database_id","subj":"2970","obj":"Gene:6999"},{"id":"A2971","pred":"tao:has_database_id","subj":"2971","obj":"Gene:6999"},{"id":"A2972","pred":"tao:has_database_id","subj":"2972","obj":"Tax:9606"},{"id":"A2973","pred":"tao:has_database_id","subj":"2973","obj":"Tax:9606"},{"id":"A2974","pred":"tao:has_database_id","subj":"2974","obj":"Tax:9606"},{"id":"A2975","pred":"tao:has_database_id","subj":"2975","obj":"Tax:694002"},{"id":"A2976","pred":"tao:has_database_id","subj":"2976","obj":"Tax:694009"},{"id":"A2977","pred":"tao:has_database_id","subj":"2977","obj":"Tax:1335626"},{"id":"A2978","pred":"tao:has_database_id","subj":"2978","obj":"Tax:9606"},{"id":"A2979","pred":"tao:has_database_id","subj":"2979","obj":"MESH:C000657245"},{"id":"A2980","pred":"tao:has_database_id","subj":"2980","obj":"MESH:D008231"},{"id":"A2981","pred":"tao:has_database_id","subj":"2981","obj":"MESH:C000657245"},{"id":"A2982","pred":"tao:has_database_id","subj":"2982","obj":"MESH:C000657245"},{"id":"A2983","pred":"tao:has_database_id","subj":"2983","obj":"MESH:C000657245"},{"id":"A2984","pred":"tao:has_database_id","subj":"2984","obj":"MESH:C000657245"},{"id":"A2985","pred":"tao:has_database_id","subj":"2985","obj":"MESH:D007239"},{"subj":"2960","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2961","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2962","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2963","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2964","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2965","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2966","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2967","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2968","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2969","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2970","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2971","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2972","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2973","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2974","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2975","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2976","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2977","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2978","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2979","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2980","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2981","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2982","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2983","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2984","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2985","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T515","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"T516","span":{"begin":132,"end":386},"obj":"Sentence"},{"id":"T517","span":{"begin":387,"end":625},"obj":"Sentence"},{"id":"T518","span":{"begin":626,"end":896},"obj":"Sentence"},{"id":"T519","span":{"begin":897,"end":1275},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T515","pred":"source","obj":"LitCovid-sentences"},{"subj":"T516","pred":"source","obj":"LitCovid-sentences"},{"subj":"T517","pred":"source","obj":"LitCovid-sentences"},{"subj":"T518","pred":"source","obj":"LitCovid-sentences"},{"subj":"T519","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#ad93ec","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#93ec93"},{"id":"LitCovid-PD-MONDO","color":"#ec93ad"},{"id":"LitCovid-PD-CLO","color":"#93c7ec"},{"id":"LitCovid-PD-CHEBI","color":"#e1ec93"},{"id":"LitCovid-PD-HP","color":"#dd93ec"},{"id":"LitCovid-PubTator","color":"#93ecc3"},{"id":"LitCovid-sentences","color":"#eca993"}]}]}}