PMC:7200337 / 42851-43117 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T427","span":{"begin":13,"end":16},"obj":"Body_part"},{"id":"T428","span":{"begin":29,"end":32},"obj":"Body_part"},{"id":"T429","span":{"begin":76,"end":81},"obj":"Body_part"}],"attributes":[{"id":"A427","pred":"fma_id","subj":"T427","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A428","pred":"fma_id","subj":"T428","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A429","pred":"fma_id","subj":"T429","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Accordingly, RNA sequencing (RNA-seq) data by Liao et al. showed that CD8 T cells in the BAL fluid of severe COVID-19 patients express cytotoxic genes such as GZMA, GZMB, and GZMK at higher levels, while KLRC1 and XCL1 are enriched in mild cases (Liao et al., 2020)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T273","span":{"begin":109,"end":117},"obj":"Disease"}],"attributes":[{"id":"A273","pred":"mondo_id","subj":"T273","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Accordingly, RNA sequencing (RNA-seq) data by Liao et al. showed that CD8 T cells in the BAL fluid of severe COVID-19 patients express cytotoxic genes such as GZMA, GZMB, and GZMK at higher levels, while KLRC1 and XCL1 are enriched in mild cases (Liao et al., 2020)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T553","span":{"begin":70,"end":73},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T554","span":{"begin":74,"end":81},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T555","span":{"begin":145,"end":150},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"Accordingly, RNA sequencing (RNA-seq) data by Liao et al. showed that CD8 T cells in the BAL fluid of severe COVID-19 patients express cytotoxic genes such as GZMA, GZMB, and GZMK at higher levels, while KLRC1 and XCL1 are enriched in mild cases (Liao et al., 2020)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T226","span":{"begin":89,"end":92},"obj":"Chemical"}],"attributes":[{"id":"A226","pred":"chebi_id","subj":"T226","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"}],"text":"Accordingly, RNA sequencing (RNA-seq) data by Liao et al. showed that CD8 T cells in the BAL fluid of severe COVID-19 patients express cytotoxic genes such as GZMA, GZMB, and GZMK at higher levels, while KLRC1 and XCL1 are enriched in mild cases (Liao et al., 2020)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"1416","span":{"begin":70,"end":73},"obj":"Gene"},{"id":"1417","span":{"begin":159,"end":163},"obj":"Gene"},{"id":"1418","span":{"begin":165,"end":169},"obj":"Gene"},{"id":"1419","span":{"begin":175,"end":179},"obj":"Gene"},{"id":"1420","span":{"begin":204,"end":209},"obj":"Gene"},{"id":"1421","span":{"begin":214,"end":218},"obj":"Gene"},{"id":"1432","span":{"begin":118,"end":126},"obj":"Species"},{"id":"1439","span":{"begin":109,"end":117},"obj":"Disease"}],"attributes":[{"id":"A1416","pred":"tao:has_database_id","subj":"1416","obj":"Gene:925"},{"id":"A1417","pred":"tao:has_database_id","subj":"1417","obj":"Gene:3001"},{"id":"A1418","pred":"tao:has_database_id","subj":"1418","obj":"Gene:3002"},{"id":"A1419","pred":"tao:has_database_id","subj":"1419","obj":"Gene:3003"},{"id":"A1420","pred":"tao:has_database_id","subj":"1420","obj":"Gene:3821"},{"id":"A1421","pred":"tao:has_database_id","subj":"1421","obj":"Gene:6375"},{"id":"A1432","pred":"tao:has_database_id","subj":"1432","obj":"Tax:9606"},{"id":"A1439","pred":"tao:has_database_id","subj":"1439","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Accordingly, RNA sequencing (RNA-seq) data by Liao et al. showed that CD8 T cells in the BAL fluid of severe COVID-19 patients express cytotoxic genes such as GZMA, GZMB, and GZMK at higher levels, while KLRC1 and XCL1 are enriched in mild cases (Liao et al., 2020)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T230","span":{"begin":0,"end":266},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Accordingly, RNA sequencing (RNA-seq) data by Liao et al. showed that CD8 T cells in the BAL fluid of severe COVID-19 patients express cytotoxic genes such as GZMA, GZMB, and GZMK at higher levels, while KLRC1 and XCL1 are enriched in mild cases (Liao et al., 2020)."}