> top > docs > PMC:7199903 > spans > 5315-6389 > annotations

PMC:7199903 / 5315-6389 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T31 54-66 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T32 117-129 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T33 274-281 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 415-420 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 553-560 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 619-625 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 637-642 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 690-695 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39 879-886 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 926-933 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 965-972 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 415-420 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 619-625 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 41-49 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 104-112 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 326-329 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T29 540-548 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 866-874 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 913-921 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 69-70 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 184-187 http://purl.obolibrary.org/obo/CLO_0009141 denotes S/T
T40 184-187 http://purl.obolibrary.org/obo/CLO_0050980 denotes S/T
T41 370-377 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T42 482-483 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T43 603-608 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T44 609-625 http://www.ebi.ac.uk/efo/EFO_0000927 denotes embryonic kidney
T45 632-642 http://purl.obolibrary.org/obo/CLO_0054159 denotes 293F cells
T46 690-695 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T44 54-66 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T45 117-129 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T46 228-231 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T49 252-255 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T51 260-263 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T53 268-271 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T54 274-281 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T55 370-377 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T56 379-381 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T57 445-447 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T58 476-478 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T60 485-488 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T61 489-503 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T64 553-560 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T65 838-840 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T66 879-886 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T67 926-933 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68 965-972 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T30 637-642 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T31 690-695 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T885 195-196 NN denotes X
T886 197-198 SYM denotes ≠
T887 199-200 NN denotes P
T888 200-201 -RRB- denotes )
T889 202-205 VBP denotes are
T890 206-211 VBN denotes shown
T891 212-214 IN denotes as
T892 215-223 NNS denotes branches
T893 224-225 -LRB- denotes (
T894 225-226 NN denotes N
T895 226-227 -COMMA- denotes ,
T896 228-231 NNP denotes Asn
T897 231-232 -SEMICOLON- denotes ;
T898 233-234 SYM denotes X
T899 234-235 -COMMA- denotes ,
T900 236-239 DT denotes any
T901 240-247 NN denotes residue
T902 247-248 -SEMICOLON- denotes ;
T903 249-250 NN denotes S
T904 250-251 -COMMA- denotes ,
T905 252-255 NN denotes Ser
T906 255-256 -SEMICOLON- denotes ;
T907 257-258 NN denotes T
T908 258-259 -COMMA- denotes ,
T909 260-263 NNP denotes Thr
T910 263-264 -SEMICOLON- denotes ;
T911 265-266 NN denotes P
T912 266-267 -COMMA- denotes ,
T913 268-271 NNP denotes Pro
T914 271-272 -RRB- denotes )
T915 274-281 NN denotes Protein
T916 282-289 NNS denotes domains
T917 290-293 VBP denotes are
T918 294-305 VBN denotes illustrated
T919 305-306 -COLON- denotes :
T920 307-317 JJ denotes N-terminal
T921 318-324 NN denotes domain
T922 325-326 -LRB- denotes (
T923 326-329 NN denotes NTD
T924 329-330 -RRB- denotes )
T925 330-331 -COMMA- denotes ,
T926 332-340 NN denotes receptor
T927 341-348 NN denotes binding
T928 349-355 NN denotes domain
T929 356-357 -LRB- denotes (
T930 357-360 NN denotes RBD
T931 360-361 -RRB- denotes )
T932 361-362 -COMMA- denotes ,
T933 363-369 NN denotes fusion
T934 370-377 NN denotes peptide
T935 378-379 -LRB- denotes (
T936 379-381 NN denotes FP
T937 381-382 -RRB- denotes )
T938 382-383 -COMMA- denotes ,
T939 384-390 NN denotes heptad
T940 391-397 NN denotes repeat
T941 398-399 CD denotes 1
T942 400-401 -LRB- denotes (
T943 401-404 NN denotes HR1
T944 404-405 -RRB- denotes )
T945 405-406 -COMMA- denotes ,
T946 407-414 JJ denotes central
T947 415-420 NN denotes helix
T948 421-422 -LRB- denotes (
T949 422-424 NN denotes CH
T950 424-425 -RRB- denotes )
T951 425-426 -COMMA- denotes ,
T952 427-436 NN denotes connector
T953 437-443 NN denotes domain
T954 444-445 -LRB- denotes (
T955 445-447 NN denotes CD
T956 447-448 -RRB- denotes )
T957 448-449 -COMMA- denotes ,
T958 450-453 CC denotes and
T959 454-467 JJ denotes transmembrane
T960 468-474 NN denotes domain
T961 475-476 -LRB- denotes (
T962 476-478 NN denotes TM
T963 478-479 -RRB- denotes )
T964 481-482 -LRB- denotes (
T965 482-483 NN denotes B
T966 483-484 -RRB- denotes )
T967 485-503 NN denotes SDS–polyacrylamide
T968 504-507 NN denotes gel
T969 508-523 NN denotes electrophoresis
T970 524-532 NN denotes analysis
T971 533-535 IN denotes of
T972 536-539 DT denotes the
T973 540-550 NN denotes SARS-CoV-2
T974 551-552 NN denotes S
T975 553-560 NN denotes protein
T976 561-562 -LRB- denotes (
T977 562-571 VBN denotes indicated
T978 572-574 IN denotes by
T979 575-578 DT denotes the
T980 579-588 NN denotes arrowhead
T981 588-589 -RRB- denotes )
T982 590-599 VBN denotes expressed
T983 600-602 IN denotes in
T984 603-608 JJ denotes human
T985 609-618 JJ denotes embryonic
T986 619-625 NN denotes kidney
T987 626-627 -LRB- denotes (
T988 627-630 NN denotes HEK
T989 630-631 -RRB- denotes )
T990 632-636 NN denotes 293F
T991 637-642 NNS denotes cells
T992 644-648 NN denotes Lane
T993 649-650 CD denotes 1
T994 650-651 -COLON- denotes :
T995 652-660 VBN denotes filtered
T996 661-672 NN denotes supernatant
T997 673-677 IN denotes from
T998 678-689 VBN denotes transfected
T999 690-695 NNS denotes cells
T1000 695-696 -SEMICOLON- denotes ;
T1001 697-701 NN denotes lane
T1002 702-703 CD denotes 2
T1003 703-704 -COLON- denotes :
T1004 705-717 NN denotes flow-through
T1005 718-722 IN denotes from
T1006 723-734 NN denotes StrepTactin
T1007 735-740 NN denotes resin
T1008 740-741 -SEMICOLON- denotes ;
T1009 742-746 NN denotes lane
T1010 747-748 CD denotes 3
T1011 748-749 -COLON- denotes :
T1012 750-754 NN denotes wash
T1013 755-759 IN denotes from
T1014 760-771 NN denotes StrepTactin
T1015 772-777 NN denotes resin
T1016 777-778 -SEMICOLON- denotes ;
T1017 779-783 NN denotes lane
T1018 784-785 CD denotes 4
T1019 785-786 -COLON- denotes :
T1020 787-794 NN denotes elution
T1021 795-799 IN denotes from
T1022 800-811 NN denotes StrepTactin
T1023 812-818 NN denotes resin.
T1024 819-820 -LRB- denotes (
T1025 820-821 NN denotes C
T1026 821-822 -RRB- denotes )
T1027 823-837 JJ denotes Negative-stain
T1028 838-840 NN denotes EM
T1029 841-843 NN denotes 2D
T1030 844-849 NN denotes class
T1031 850-858 NNS denotes averages
T1032 859-861 IN denotes of
T1033 862-865 DT denotes the
T1034 866-876 NN denotes SARS-CoV-2
T1035 877-878 NN denotes S
T1036 879-886 NN denotes protein
T1037 888-890 NN denotes 2D
T1038 891-896 NN denotes class
T1039 897-905 NNS denotes averages
T1040 906-908 IN denotes of
T1041 909-912 DT denotes the
T1042 913-923 NN denotes SARS-CoV-2
T1043 924-925 NN denotes S
T1044 926-933 NN denotes protein
T1045 934-937 VBP denotes are
T1046 938-943 VBN denotes shown
T1047 943-944 -COMMA- denotes ,
T1048 945-955 VBG denotes confirming
T1049 956-960 IN denotes that
T1050 961-964 DT denotes the
T1051 965-972 NN denotes protein
T1052 973-979 VBZ denotes adopts
T1053 980-983 DT denotes the
T1054 984-992 JJ denotes trimeric
T1055 993-1002 NN denotes prefusion
T1056 1003-1015 NN denotes conformation
T1057 1016-1024 VBG denotes matching
T1058 1025-1028 DT denotes the
T1059 1029-1037 NN denotes material
T1060 1038-1042 VBN denotes used
T1061 1043-1045 TO denotes to
T1062 1046-1055 VB denotes determine
T1063 1056-1059 DT denotes the
T1064 1060-1069 NN denotes structure
T1065 1070-1071 -LRB- denotes (
T1066 1071-1072 CD denotes 4
T1067 1072-1073 -RRB- denotes )
T855 0-4 NNP denotes Fig.
T856 5-6 CD denotes 1
T857 8-18 NN denotes Expression
T858 19-22 CC denotes and
T859 23-33 NN denotes validation
T860 34-36 IN denotes of
T861 37-40 DT denotes the
T862 41-51 NN denotes SARS-CoV-2
T863 52-53 NN denotes S
T864 54-66 NN denotes glycoprotein
T865 68-69 -LRB- denotes (
T866 69-70 NN denotes A
T867 70-71 -RRB- denotes )
T868 72-81 JJ denotes Schematic
T869 82-96 NN denotes representation
T870 97-99 IN denotes of
T871 100-103 DT denotes the
T872 104-114 NN denotes SARS-CoV-2
T873 115-116 NN denotes S
T874 117-129 NN denotes glycoprotein
T875 131-134 DT denotes The
T876 135-144 NNS denotes positions
T877 145-147 IN denotes of
T878 148-156 JJ denotes N-linked
T879 157-170 NN denotes glycosylation
T880 171-178 NNS denotes sequons
T881 179-180 -LRB- denotes (
T882 180-187 NN denotes N-X-S/T
T883 187-188 -COMMA- denotes ,
T884 189-194 WRB denotes where
R904 T901 T899 arg2Of residue,","
R905 T901 T900 arg1Of residue,any
R906 T894 T902 arg1Of N,;
R907 T903 T902 arg2Of S,;
R908 T903 T904 arg1Of S,","
R909 T905 T904 arg2Of Ser,","
R910 T902 T906 arg1Of ;,;
R911 T907 T906 arg2Of T,;
R912 T907 T908 arg1Of T,","
R913 T909 T908 arg2Of Thr,","
R914 T907 T910 arg1Of T,;
R915 T911 T910 arg2Of P,;
R916 T911 T912 arg1Of P,","
R917 T913 T912 arg2Of Pro,","
R918 T916 T915 arg1Of domains,Protein
R919 T916 T917 arg1Of domains,are
R920 T918 T917 arg2Of illustrated,are
R921 T916 T918 arg2Of domains,illustrated
R922 T918 T919 arg1Of illustrated,:
R923 T967 T919 arg2Of SDS–polyacrylamide,:
R924 T921 T920 arg1Of domain,N-terminal
R925 T921 T922 arg1Of domain,(
R940 T937 T935 arg3Of ),(
R941 T932 T938 arg1Of ",",","
R942 T940 T938 arg2Of repeat,","
R943 T940 T939 arg1Of repeat,heptad
R944 T940 T941 arg1Of repeat,1
R945 T940 T942 arg1Of repeat,(
R946 T943 T942 arg2Of HR1,(
R947 T944 T942 arg3Of ),(
R948 T938 T945 arg1Of ",",","
R949 T958 T945 arg2Of and,","
R950 T947 T946 arg1Of helix,central
R951 T947 T948 arg1Of helix,(
R952 T949 T948 arg2Of CH,(
R984 T980 T979 arg1Of arrowhead,the
R985 T970 T982 arg2Of analysis,expressed
R986 T982 T983 arg1Of expressed,in
R987 T991 T983 arg2Of cells,in
R988 T991 T984 arg1Of cells,human
R989 T991 T985 arg1Of cells,embryonic
R990 T991 T986 arg1Of cells,kidney
R991 T991 T987 arg1Of cells,(
R1056 T1056 T1052 arg2Of conformation,adopts
R860 T857 T855 arg1Of Expression,Fig.
R861 T855 T856 arg1Of Fig.,1
R862 T857 T858 arg1Of Expression,and
R863 T859 T858 arg2Of validation,and
R864 T859 T860 arg1Of validation,of
R865 T864 T860 arg2Of glycoprotein,of
R866 T864 T861 arg1Of glycoprotein,the
R867 T864 T862 arg1Of glycoprotein,SARS-CoV-2
R868 T864 T863 arg1Of glycoprotein,S
R869 T869 T865 arg1Of representation,(
R870 T866 T865 arg2Of A,(
R871 T867 T865 arg3Of ),(
R872 T869 T868 arg1Of representation,Schematic
R873 T869 T870 arg1Of representation,of
R874 T874 T870 arg2Of glycoprotein,of
R875 T874 T871 arg1Of glycoprotein,the
R876 T874 T872 arg1Of glycoprotein,SARS-CoV-2
R877 T874 T873 arg1Of glycoprotein,S
R878 T876 T875 arg1Of positions,The
R879 T876 T877 arg1Of positions,of
R880 T882 T877 arg2Of N-X-S/T,of
R881 T882 T878 arg1Of N-X-S/T,N-linked
R882 T882 T879 arg1Of N-X-S/T,glycosylation
R883 T882 T880 arg1Of N-X-S/T,sequons
R884 T882 T881 arg1Of N-X-S/T,(
R885 T882 T883 arg1Of N-X-S/T,","
R886 T882 T884 arg1Of N-X-S/T,where
R887 T890 T884 arg2Of shown,where
R888 T887 T885 arg1Of P,X
R889 T887 T886 arg1Of P,≠
R890 T887 T888 arg1Of P,)
R891 T887 T889 arg1Of P,are
R892 T890 T889 arg2Of shown,are
R893 T887 T890 arg2Of P,shown
R894 T890 T891 arg1Of shown,as
R895 T892 T891 arg2Of branches,as
R896 T876 T893 arg1Of positions,(
R897 T902 T893 arg2Of ;,(
R898 T914 T893 arg3Of ),(
R899 T894 T895 arg1Of N,","
R900 T896 T895 arg2Of Asn,","
R901 T894 T897 arg1Of N,;
R902 T894 T898 arg1Of N,X
R903 T894 T899 arg1Of N,","
R926 T923 T922 arg2Of NTD,(
R927 T924 T922 arg3Of ),(
R928 T921 T925 arg1Of domain,","
R929 T928 T925 arg2Of domain,","
R930 T928 T926 arg1Of domain,receptor
R931 T928 T927 arg1Of domain,binding
R932 T928 T929 arg1Of domain,(
R933 T930 T929 arg2Of RBD,(
R934 T931 T929 arg3Of ),(
R935 T925 T932 arg1Of ",",","
R936 T934 T932 arg2Of peptide,","
R937 T934 T933 arg1Of peptide,fusion
R938 T934 T935 arg1Of peptide,(
R939 T936 T935 arg2Of FP,(
R953 T950 T948 arg3Of ),(
R954 T947 T951 arg1Of helix,","
R955 T953 T951 arg2Of domain,","
R956 T953 T952 arg1Of domain,connector
R957 T953 T954 arg1Of domain,(
R958 T955 T954 arg2Of CD,(
R959 T956 T954 arg3Of ),(
R960 T958 T957 arg1Of and,","
R961 T951 T958 arg1Of ",",and
R962 T960 T958 arg2Of domain,and
R963 T960 T959 arg1Of domain,transmembrane
R964 T960 T961 arg1Of domain,(
R965 T962 T961 arg2Of TM,(
R966 T963 T961 arg3Of ),(
R967 T958 T964 arg1Of and,(
R968 T965 T964 arg2Of B,(
R969 T966 T964 arg3Of ),(
R970 T938 T967 arg1Of ",",SDS–polyacrylamide
R971 T970 T967 arg2Of analysis,SDS–polyacrylamide
R972 T970 T968 arg1Of analysis,gel
R973 T970 T969 arg1Of analysis,electrophoresis
R974 T970 T971 arg1Of analysis,of
R975 T975 T971 arg2Of protein,of
R976 T975 T972 arg1Of protein,the
R977 T975 T973 arg1Of protein,SARS-CoV-2
R978 T975 T974 arg1Of protein,S
R979 T975 T976 arg1Of protein,(
R980 T977 T976 arg2Of indicated,(
R981 T981 T976 arg3Of ),(
R982 T980 T977 arg1Of arrowhead,indicated
R983 T980 T978 arg2Of arrowhead,by
R992 T988 T987 arg2Of HEK,(
R993 T989 T987 arg3Of ),(
R994 T991 T990 arg1Of cells,293F
R995 T992 T993 arg1Of Lane,1
R996 T992 T994 arg1Of Lane,:
R997 T996 T994 arg2Of supernatant,:
R998 T996 T995 arg2Of supernatant,filtered
R999 T996 T997 arg1Of supernatant,from
R1000 T999 T997 arg2Of cells,from
R1001 T999 T998 arg2Of cells,transfected
R1002 T996 T1000 arg1Of supernatant,;
R1003 T1001 T1000 arg2Of lane,;
R1004 T1001 T1002 arg1Of lane,2
R1005 T1001 T1003 arg1Of lane,:
R1006 T1005 T1004 arg1Of from,flow-through
R1007 T1001 T1005 arg1Of lane,from
R1008 T1008 T1005 arg2Of ;,from
R1009 T1007 T1006 arg1Of resin,StrepTactin
R1010 T1007 T1008 arg1Of resin,;
R1011 T1009 T1008 arg2Of lane,;
R1012 T1009 T1010 arg1Of lane,3
R1013 T1001 T1011 arg1Of lane,:
R1014 T1013 T1012 arg1Of from,wash
R1015 T1001 T1013 arg1Of lane,from
R1016 T1015 T1013 arg2Of resin,from
R1017 T1015 T1014 arg1Of resin,StrepTactin
R1018 T1001 T1016 arg1Of lane,;
R1019 T1017 T1016 arg2Of lane,;
R1020 T1017 T1018 arg1Of lane,4
R1021 T1017 T1019 arg1Of lane,:
R1022 T1021 T1020 arg1Of from,elution
R1023 T1017 T1021 arg1Of lane,from
R1024 T1031 T1021 arg2Of averages,from
R1025 T1031 T1022 arg1Of averages,StrepTactin
R1026 T1031 T1023 arg1Of averages,resin.
R1027 T1031 T1024 arg1Of averages,(
R1028 T1025 T1024 arg2Of C,(
R1029 T1026 T1024 arg3Of ),(
R1030 T1031 T1027 arg1Of averages,Negative-stain
R1031 T1031 T1028 arg1Of averages,EM
R1032 T1031 T1029 arg1Of averages,2D
R1033 T1031 T1030 arg1Of averages,class
R1034 T1031 T1032 arg1Of averages,of
R1035 T1036 T1032 arg2Of protein,of
R1036 T1036 T1033 arg1Of protein,the
R1037 T1036 T1034 arg1Of protein,SARS-CoV-2
R1038 T1036 T1035 arg1Of protein,S
R1039 T1039 T1037 arg1Of averages,2D
R1040 T1039 T1038 arg1Of averages,class
R1041 T1039 T1040 arg1Of averages,of
R1042 T1044 T1040 arg2Of protein,of
R1043 T1044 T1041 arg1Of protein,the
R1044 T1044 T1042 arg1Of protein,SARS-CoV-2
R1045 T1044 T1043 arg1Of protein,S
R1046 T1039 T1045 arg1Of averages,are
R1047 T1046 T1045 arg2Of shown,are
R1048 T1039 T1046 arg2Of averages,shown
R1049 T1048 T1046 arg3Of confirming,shown
R1050 T1046 T1047 arg1Of shown,","
R1051 T1039 T1048 arg1Of averages,confirming
R1052 T1052 T1048 arg2Of adopts,confirming
R1053 T1052 T1049 arg1Of adopts,that
R1054 T1051 T1050 arg1Of protein,the
R1055 T1051 T1052 arg1Of protein,adopts
R1057 T1056 T1053 arg1Of conformation,the
R1058 T1056 T1054 arg1Of conformation,trimeric
R1059 T1056 T1055 arg1Of conformation,prefusion
R1060 T1056 T1057 arg1Of conformation,matching
R1061 T1059 T1057 arg2Of material,matching
R1062 T1059 T1058 arg1Of material,the
R1063 T1059 T1060 arg2Of material,used
R1064 T1062 T1060 arg3Of determine,used
R1065 T1062 T1061 arg1Of determine,to
R1066 T1059 T1062 arg1Of material,determine
R1067 T1064 T1062 arg2Of structure,determine
R1068 T1064 T1063 arg1Of structure,the
R1069 T1064 T1065 arg1Of structure,(
R1070 T1066 T1065 arg2Of 4,(
R1071 T1067 T1065 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T31 54-66 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T32 117-129 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T33 274-281 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 415-420 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 553-560 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 619-625 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 637-642 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 690-695 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39 879-886 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 926-933 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 965-972 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 54-66 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T32 117-129 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T33 228-231 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T36 252-255 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T38 260-263 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T40 268-271 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T41 274-281 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T42 370-377 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T43 485-488 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T44 489-503 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T47 553-560 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T48 879-886 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 926-933 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T50 965-972 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T23 41-51 Species denotes SARS-CoV-2 NCBItxid:2697049
T24 104-114 Species denotes SARS-CoV-2 NCBItxid:2697049
T25 540-550 Species denotes SARS-CoV-2 NCBItxid:2697049
T26 603-608 Species denotes human NCBItxid:9606
T27 866-876 Species denotes SARS-CoV-2 NCBItxid:2697049
T28 913-923 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T39 0-67 Sentence denotes Fig. 1 Expression and validation of the SARS-CoV-2 S glycoprotein.
T40 68-130 Sentence denotes (A) Schematic representation of the SARS-CoV-2 S glycoprotein.
T41 131-273 Sentence denotes The positions of N-linked glycosylation sequons (N-X-S/T, where X ≠ P) are shown as branches (N, Asn; X, any residue; S, Ser; T, Thr; P, Pro).
T42 274-643 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.
T43 644-887 Sentence denotes Lane 1: filtered supernatant from transfected cells; lane 2: flow-through from StrepTactin resin; lane 3: wash from StrepTactin resin; lane 4: elution from StrepTactin resin. (C) Negative-stain EM 2D class averages of the SARS-CoV-2 S protein.
T44 888-1074 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 415-420 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 619-625 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 41-51 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T24 104-114 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T25 540-550 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T26 866-876 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T27 913-923 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
151 41-51 Species denotes SARS-CoV-2 Tax:2697049
171 924-933 Gene denotes S protein Gene:43740568
172 877-886 Gene denotes S protein Gene:43740568
173 551-560 Gene denotes S protein Gene:43740568
174 249-250 Gene denotes S Gene:43740568
175 184-185 Gene denotes S Gene:43740568
176 115-116 Gene denotes S Gene:43740568
177 104-114 Species denotes SARS-CoV-2 Tax:2697049
178 540-550 Species denotes SARS-CoV-2 Tax:2697049
179 603-608 Species denotes human Tax:9606
180 866-876 Species denotes SARS-CoV-2 Tax:2697049
181 913-923 Species denotes SARS-CoV-2 Tax:2697049
182 148-149 Chemical denotes N MESH:D009584
183 228-231 Chemical denotes Asn MESH:D001216
184 252-255 Chemical denotes Ser MESH:D012694
185 260-263 Chemical denotes Thr MESH:D013912
186 268-271 Chemical denotes Pro MESH:D011392
187 485-503 Chemical denotes SDS–polyacrylamide
188 609-625 Disease denotes embryonic kidney MESH:D007674
189 627-636 CellLine denotes HEK) 293F CVCL:6642

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T410 52-66 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T509 115-129 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T608 357-360 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022
T617 551-560 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T650 609-618 Protein denotes embryonic https://www.uniprot.org/uniprot/P02301
T651 627-630 Protein denotes HEK https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320
T654 877-886 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T687 924-933 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T1 619-625 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T24 157-170 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T22 157-170 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T24 148-170 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T25 157-170 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T1 260-263 https://glytoucan.org/Structures/Glycans/G69371PB denotes Thr
T2 260-263 https://glytoucan.org/Structures/Glycans/G00134PL denotes Thr
T3 260-263 https://glytoucan.org/Structures/Glycans/G52865ZM denotes Thr
T4 260-263 https://glytoucan.org/Structures/Glycans/G50601AY denotes Thr
T5 260-263 https://glytoucan.org/Structures/Glycans/G27898GL denotes Thr
T6 260-263 https://glytoucan.org/Structures/Glycans/G90753WM denotes Thr
T7 260-263 https://glytoucan.org/Structures/Glycans/G57814GP denotes Thr
T8 260-263 https://glytoucan.org/Structures/Glycans/G42918SL denotes Thr
T9 260-263 https://glytoucan.org/Structures/Glycans/G81521LC denotes Thr
T10 260-263 https://glytoucan.org/Structures/Glycans/G19289PT denotes Thr
T11 260-263 https://glytoucan.org/Structures/Glycans/G23779KC denotes Thr
T12 260-263 https://glytoucan.org/Structures/Glycans/G94729UX denotes Thr
T13 260-263 https://glytoucan.org/Structures/Glycans/G49708JS denotes Thr
T14 260-263 https://glytoucan.org/Structures/Glycans/G60349YI denotes Thr
T15 260-263 https://glytoucan.org/Structures/Glycans/G63317ON denotes Thr
T16 260-263 https://glytoucan.org/Structures/Glycans/G71284FA denotes Thr
T17 260-263 https://glytoucan.org/Structures/Glycans/G42091PK denotes Thr
T18 260-263 https://glytoucan.org/Structures/Glycans/G39722QK denotes Thr
T19 260-263 https://glytoucan.org/Structures/Glycans/G76637LW denotes Thr
T20 260-263 https://glytoucan.org/Structures/Glycans/G46130CG denotes Thr
T21 260-263 https://glytoucan.org/Structures/Glycans/G05333AM denotes Thr
T22 260-263 https://glytoucan.org/Structures/Glycans/G77428YW denotes Thr
T23 260-263 https://glytoucan.org/Structures/Glycans/G15142RK denotes Thr
T24 260-263 https://glytoucan.org/Structures/Glycans/G06824UZ denotes Thr
T25 260-263 https://glytoucan.org/Structures/Glycans/G48723MN denotes Thr
T26 260-263 https://glytoucan.org/Structures/Glycans/G35093GE denotes Thr
T27 260-263 https://glytoucan.org/Structures/Glycans/G34845TQ denotes Thr
T28 260-263 https://glytoucan.org/Structures/Glycans/G71815PL denotes Thr
T29 260-263 https://glytoucan.org/Structures/Glycans/G97173UR denotes Thr
T30 260-263 https://glytoucan.org/Structures/Glycans/G53453JD denotes Thr
T31 260-263 https://glytoucan.org/Structures/Glycans/G81407LL denotes Thr
T32 260-263 https://glytoucan.org/Structures/Glycans/G46430YF denotes Thr

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T39 0-67 Sentence denotes Fig. 1 Expression and validation of the SARS-CoV-2 S glycoprotein.
T40 68-130 Sentence denotes (A) Schematic representation of the SARS-CoV-2 S glycoprotein.
T41 131-273 Sentence denotes The positions of N-linked glycosylation sequons (N-X-S/T, where X ≠ P) are shown as branches (N, Asn; X, any residue; S, Ser; T, Thr; P, Pro).
T42 274-643 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.
T43 644-887 Sentence denotes Lane 1: filtered supernatant from transfected cells; lane 2: flow-through from StrepTactin resin; lane 3: wash from StrepTactin resin; lane 4: elution from StrepTactin resin. (C) Negative-stain EM 2D class averages of the SARS-CoV-2 S protein.
T44 888-1074 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
151 41-51 Species denotes SARS-CoV-2 Tax:2697049
171 924-933 Gene denotes S protein Gene:43740568
172 877-886 Gene denotes S protein Gene:43740568
173 551-560 Gene denotes S protein Gene:43740568
174 249-250 Gene denotes S Gene:43740568
175 184-185 Gene denotes S Gene:43740568
176 115-116 Gene denotes S Gene:43740568
177 104-114 Species denotes SARS-CoV-2 Tax:2697049
178 540-550 Species denotes SARS-CoV-2 Tax:2697049
179 603-608 Species denotes human Tax:9606
180 866-876 Species denotes SARS-CoV-2 Tax:2697049
181 913-923 Species denotes SARS-CoV-2 Tax:2697049
182 148-149 Chemical denotes N MESH:D009584
183 228-231 Chemical denotes Asn MESH:D001216
184 252-255 Chemical denotes Ser MESH:D012694
185 260-263 Chemical denotes Thr MESH:D013912
186 268-271 Chemical denotes Pro MESH:D011392
187 485-503 Chemical denotes SDS–polyacrylamide
188 609-625 Disease denotes embryonic kidney MESH:D007674
189 627-636 CellLine denotes HEK) 293F CVCL:6642