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PMC:7199903 / 4589-4681 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T28 22-29 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 74-81 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 61-69 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T34 43-45 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T30 22-29 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T31 46-53 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T32 74-81 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T733 0-4 DT denotes This
T734 5-12 NN denotes variant
T735 13-15 IN denotes of
T736 16-19 DT denotes the
T737 20-21 NN denotes S
T738 22-29 NN denotes protein
T739 30-38 VBZ denotes contains
T740 39-42 DT denotes all
T741 43-45 CD denotes 22
T742 46-53 NNS denotes glycans
T743 54-56 IN denotes on
T744 57-60 DT denotes the
T745 61-71 NN denotes SARS-CoV-2
T746 72-73 NN denotes S
T747 74-81 NN denotes protein
T748 82-83 -LRB- denotes (
T749 83-87 NN denotes Fig.
T750 88-90 NN denotes 1A
T751 90-91 -RRB- denotes )
R738 T734 T733 arg1Of variant,This
R739 T734 T735 arg1Of variant,of
R740 T738 T735 arg2Of protein,of
R741 T738 T736 arg1Of protein,the
R742 T738 T737 arg1Of protein,S
R743 T734 T739 arg1Of variant,contains
R744 T742 T739 arg2Of glycans,contains
R745 T741 T740 arg1Of 22,all
R746 T742 T741 arg1Of glycans,22
R747 T739 T743 arg1Of contains,on
R748 T747 T743 arg2Of protein,on
R749 T747 T744 arg1Of protein,the
R750 T747 T745 arg1Of protein,SARS-CoV-2
R751 T747 T746 arg1Of protein,S
R752 T747 T748 arg1Of protein,(
R753 T750 T748 arg2Of 1A,(
R754 T751 T748 arg3Of ),(
R755 T750 T749 arg1Of 1A,Fig.

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T28 22-29 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 74-81 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T24 22-29 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25 46-53 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T26 74-81 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T21 61-71 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T34 0-92 Sentence denotes This variant of the S protein contains all 22 glycans on the SARS-CoV-2 S protein (Fig. 1A).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 61-71 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
138 20-29 Gene denotes S protein Gene:43740568
139 72-81 Gene denotes S protein Gene:43740568
143 61-71 Species denotes SARS-CoV-2 Tax:2697049
146 46-53 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T336 20-29 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T369 72-81 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T34 0-92 Sentence denotes This variant of the S protein contains all 22 glycans on the SARS-CoV-2 S protein (Fig. 1A).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
138 20-29 Gene denotes S protein Gene:43740568
139 72-81 Gene denotes S protein Gene:43740568
143 61-71 Species denotes SARS-CoV-2 Tax:2697049
146 46-53 Chemical denotes glycans MESH:D011134